BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G20140.2
Length=1416
Score E
Sequences producing significant alignments: (Bits) Value
Ahg351109 jgi|Araly1|351109|fgenesh1_pg.C_scaffold_6001702 1541 0.0
> Ahg351109 jgi|Araly1|351109|fgenesh1_pg.C_scaffold_6001702
Length=1143
Score = 1541 bits (834), Expect = 0.0
Identities = 1019/1106 (92%), Gaps = 22/1106 (2%)
Strand=Plus/Plus
Query 86 ATGGCTACCGTTAATCAGCAGC-T-T-TACCGGCCAATACTCACCGCCGTCGGAAGTGAC 142
|||||||||||| |||||||| | | ||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTACCGTTGGTCAGCAGCATCTCTACCGGCCAATACTCACCGCCGTCGGAAGTGAT 60
Query 143 TGCCGGCGGCAT-GTAACCACCCGTTTCCTCCCTGTTCCGAGACGCAA-CGTAACCACTC 200
|||||| ||| | |||||||||||||||||||||||||| || ||||| ||| | | |
Sbjct 61 TGCCGGAGGC-TCGTAACCACCCGTTTCCTCCCTGTTCCAAGGCGCAATTTTAA-CTCCC 118
Query 201 GTCTACGGCCA-ATTTTGAGTCTTGAGGTGGGCAAGGAAGTGGCTTCAGCACCGTCGACA 259
| || ||| || || |||||||||||||| ||||||||||||||| | ||| |||||||
Sbjct 119 GGCTGCGG-CAGATATTGAGTCTTGAGGTTGGCAAGGAAGTGGCTCCGGCATCGTCGACG 177
Query 260 GTGAACATGGAAGAGCTCGTCGGATTCTTGTACGAGGATCTTCCTCACCT-TTTCGACGA 318
||||||||||||||||||||||||||||||||| | |||||||||||||| ||| |||||
Sbjct 178 GTGAACATGGAAGAGCTCGTCGGATTCTTGTACAAAGATCTTCCTCACCTCTTT-GACGA 236
Query 319 CCAAGGAATCGATAAAACGGCGTACGATGAGCGCGTGAAGTTCAGAGACCCAATCACTAA 378
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 237 CCAAGGAATCGATAAAACGGCGTACGATGAGCGGGTGAAGTTCAGAGATCCAATCACTAA 296
Query 379 GCACGACACCATCTCTGGCTATCTCTTCAACATTGCT-TTCCTCAAGAATATCTTCACTC 437
||||||||||||||| || ||||||||||||||| || || |||||||||||||||||||
Sbjct 297 GCACGACACCATCTCCGGTTATCTCTTCAACATTTCTCTT-CTCAAGAATATCTTCACTC 355
Query 438 CTCAG-TTTCAGCTTCACTGGGCTAAACAGACAGGTCCATATGAGATCACTACGAGATGG 496
||| | ||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 356 CTC-GATTTCAACTTCACTGGGCTAAACAGACAGGTCCATATGAGATAACTACAAGATGG 414
Query 497 ACAATGGTGATGAAGTTCATACCTTTACCATGGAAACCAGAACTTGTCTTCACTGGAT-T 555
||||||||||||||||| || | |||||||||||||||||| |||||||||||||| |
Sbjct 415 ACAATGGTGATGAAGTTTATGCTTTTACCATGGAAACCAGAGCTTGTCTTCACTGG-TAC 473
Query 556 ATCAATCATGGAAGTTAATCCTGAAACTAACAAATTTTGTAGTCATCTGGACTTGTGGGA 615
|||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||
Sbjct 474 ATCAATCATGGAAGTTAATCCTGAAACTAAGAAATTTTGCAGCCATCTGGACTTGTGGGA 533
Query 616 TTCTATCAAGAACAATGACTACTTTTCTCTTGAAGGTCTTGTTGATGTTTTTAAGCAGTT 675
||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 534 TTCTATCAAGAACAACGACTACTTTTCTCTGGAAGGTCTTGTTGATGTATTTAAGCAGTT 593
Query 676 ACGGATATATAAAACGCCAGACTTGGAAACTCCAAAGTATCAAATACTGAAAAGAACAGC 735
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 594 ACGGATATATAAAACGCCAGATTTGGAAACTCCAAAGTATGAAATACTGAAAAGAACAGC 653
Query 736 AAACTATGAGGTTAGAAACTATGAGCCCTTCATTGTGGTGGAGACAATTGGTGACAAGCT 795
|||||||||||| |||| ||||| |||||||| ||||||||||||| |||||||||||
Sbjct 654 AAACTATGAGGTCAGAAGGTATGAACCCTTCATAGTGGTGGAGACAAACGGTGACAAGCT 713
Query 796 TTCTGGTTCTTCAGGTTTCAACAATGTTGCTGGCTACATATTTGG-AAAGAACTCGACCA 854
||| || |||||||||||||||||||||||||||||||||||||| ||| |||||||| |
Sbjct 714 TTCAGGCTCTTCAGGTTTCAACAATGTTGCTGGCTACATATTTGGCAAA-AACTCGACGA 772
Query 855 TGGAGAAAATACCAATGACAACTCCAGTGTTTACTCAAACAACAGATAC---TCAACTCT 911
|||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 773 TGGAGAAAATACCAATGACAACCCCAGTGTTTACCCAAACAACAGATACTGATCAACTCT 832
Query 912 CTTCTGATGTCTCTGTACAAATTGTTATTCCATCAGGAAAAGATCTTAGCAGCTTACCAA 971
||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 833 CTTCTGACGTCTCTGTACAAATTGTTATTCCATCAGGAAAAGATCTCAGCAGCTTACCGA 892
Query 972 TGCCTAATGAAGAAAAGGTAAATTTGAAGAAGTTGGAAGGCGGTTTTGCTGCAGCAGTGA 1031
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 893 TGCCTAATGAAGAAAAGGTAAACTTGAAGAAGTTGGAAGGCGGATTTGCTGCAGCAGTGA 952
Query 1032 AATTCAGTGGTAAACCGACAGAGGATGTTGTCCAAGCAAAAGAGAATGAACTGAGGAGCA 1091
|||||||||| |||||||||||||| ||||||| ||||||||||||| ||||||||||
Sbjct 953 AATTCAGTGGGAAACCGACAGAGGAGGTTGTCCGCGCAAAAGAGAATGGTCTGAGGAGCA 1012
Query 1092 GTCTGAGTAAAGATGGTCTGAGAGCTAAGAAAGGTTGTATGCTTGCTCGTTACAACGATC 1151
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 GTCTGAGTAAAGATGGTCTTAGAGCTAAGAAAGGTTGTATGCTTGCTCGTTACAACGATC 1072
Query 1152 CAGGACGAACATGGAACTTCATAATG 1177
||||||||||||||||||||||||||
Sbjct 1073 CAGGACGAACATGGAACTTCATAATG 1098
Score = 86.1 bits (46), Expect = 7e-16
Identities = 46/46 (100%), Gaps = 0/46 (0%)
Strand=Plus/Plus
Query 1247 GAGGAACGAAGTTATCATATGGCTTGAAGATTTCAGTCTGGATTAG 1292
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1098 GAGGAACGAAGTTATCATATGGCTTGAAGATTTCAGTCTGGATTAG 1143
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52945440550
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5