BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G20150.1
Length=1086
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941568 jgi|Araly1|941568|scaffold_602112.1 1147 0.0
> Ahg941568 jgi|Araly1|941568|scaffold_602112.1
Length=814
Score = 1147 bits (621), Expect = 0.0
Identities = 731/784 (93%), Gaps = 7/784 (1%)
Strand=Plus/Plus
Query 58 ATGAAGTTTGGTAAGAGTCTCAGCAATCAGATCGAGCAAACTCTTCCTGAATGGCAAGAC 117
|||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||
Sbjct 21 ATGAAGTTTGGTAAGAGTCTGAGCAATCAGATCGAGCAGACACTTCCTGAATGGCAAGAC 80
Query 118 AAGTTCTTGTCTTACAAAGAACTCAAAAAACGACTCAAACTCATCGGTTCCAAAACCGCC 177
|||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||
Sbjct 81 AAGTTCTTGTCTTACAAAGAGCTCAAGAAACGACTCAAACTCATCCCTTCCAAAACCGGT 140
Query 178 GATCGTCCCGTTAAACGACTCCG-TTT-A-GATGAGTTTTCCGTCGGAATATCGAAAGAA 234
|||||||||| |||||| ||||| ||| | |||||||||||||||||||| || ||||||
Sbjct 141 GATCGTCCCGCTAAACGTCTCCGTTTTGATGATGAGTTTTCCGTCGGAATGTCCAAAGAA 200
Query 235 GAGATCAATTTCATCCAATTG-TTAGAAGACGAGTTGGAGAAATTCAACAATTTCTTCGT 293
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 201 GAGATCAATTTCATCCAATTGCTT-GAAGACGAGTTGGAGAAATTCAACAATTTCTTCGT 259
Query 294 TGAGAAGGAAGAAGAATATATCATCAGACTAAAGGAATTTAGAGATAGAATTGCGAAAGC 353
|||||| || |||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 260 TGAGAAAGAGGAAGAATATATCATCAGATTAAAGGAATTTCGAGATAGAATTGCGAAAGC 319
Query 354 TAAGGATTCAATGGAGAAGATGATAAAAATCAGGAAGGAGATTGTTGATTTCCATGGAGA 413
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 320 TAAGGATTCAATGGAGAAGATGATGACAATCAGGAAGGAGATTGTTGATTTCCATGGAGA 379
Query 414 AATGGTTCTTCTTGAGAATTACAGTGCTCTTAATTACACTGGATTGGTTAAGATACTGAA 473
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 380 GATGGTTCTTCTTGAGAATTACAGTGCTCTTAATTATACTGGATTGGTTAAGATACTGAA 439
Query 474 GAAGTATGACAAAAGAACTGGTGATCTCATGCGTTTACC-TTTCATCCAGAAAGTTCTTC 532
|||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 440 GAAGTATGACAAGAGAACTGGTGATCTCATGCGTTTACCCTTT-ATCCAGAAAGTTCTTC 498
Query 533 AGCAACCTTTTTACACTACTGACTTATTGTTCAAGCTTGTCAAGGAATCTGAGGCAATGC 592
| ||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 499 AACAACCCTTTTACACTACAGACTTATTGTTCAAGCTCGTCAAGGAATCTGAGGCAATGC 558
Query 593 TTGATCAGATCTTCCCTGCTAACGAAACTGAGTCTGAGATTATCCAAGCAGAGTTATCAG 652
|||||||| ||||||||||||||||| | |||||||||||||||||||||||| | ||||
Sbjct 559 TTGATCAGTTCTTCCCTGCTAACGAACCGGAGTCTGAGATTATCCAAGCAGAGCTCTCAG 618
Query 653 AGCATAAGTTCATGGAGAGTCTTCATATGAAGAGCACAATCGCTGCCTTGCGGGTTTTGA 712
|||| |||||||||||||| || ||||||||||| ||||||||||| |||||||||||||
Sbjct 619 AGCACAAGTTCATGGAGAGCCTCCATATGAAGAGTACAATCGCTGCTTTGCGGGTTTTGA 678
Query 713 AGGAGATCAGGAGTGGAAGTTCTACTGTTAGTGTGTTTTCATTGCCGCCTCTACAGTTAA 772
||||||||||||| |||||||||||||| || |||||||||||||||||||| || ||||
Sbjct 679 AGGAGATCAGGAGCGGAAGTTCTACTGTAAGCGTGTTTTCATTGCCGCCTCTCCAATTAA 738
Query 773 ATGGCTTAGATGAGACATGGAAGAAGATTCCATTGTTGGAGCAAGAAGCCAAATAGAGAG 832
| || ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 739 ACGGGTTAGATGAGACTTGGAAGAAGATTCCGTTGTTGGAGCAAGAAGCCAAATAGAGAG 798
Query 833 TGAG 836
|||
Sbjct 799 GGAG 802
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40448414937
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5