BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G20160.2
Length=869
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488918 jgi|Araly1|488918|fgenesh2_kg.6__2052__AT5G20160.2 767 0.0
Ahg492625 jgi|Araly1|492625|fgenesh2_kg.7__2058__AT4G22380.1 159 2e-38
> Ahg488918 jgi|Araly1|488918|fgenesh2_kg.6__2052__AT5G20160.2
Length=710
Score = 767 bits (415), Expect = 0.0
Identities = 472/499 (95%), Gaps = 6/499 (1%)
Strand=Plus/Plus
Query 312 AGCTACGAAGACTCTTAATCGTGGAATCTCCGAGTTTGTTGTCATGGCTGCAGATGCTGA 371
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 216 AGCTACGAAGACTCTTAATCGTGGAATCTCCGAGTTTGTGGTTATGGCTGCAGATGCTGA 275
Query 372 GCCTCTAGAGATTCTTCTTCATCTTCCCCTACTTGCTGAGGATAAGAATGTTCCTTATGT 431
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 276 GCCTCTAGAGATTCTTCTTCATCTTCCCTTACTTGCTGAGGATAAGAATGTTCCTTATGT 335
Query 432 CTTTGTGCCTTCAAAGCAAGCCTTGGGAAGAGCCTGTGGTGTGACTAGACCTGTTATCGC 491
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 336 CTTCGTGCCTTCAAAGCAAGCCTTGGGAAGAGCCTGTGGTGTGACTAGACCTGTTATCGC 395
Query 492 TTGTTCAGTCACATCTAACGAAGCTAGTCAATTGAAATCACAGATTCAACATCTCAAGGA 551
|||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||
Sbjct 396 TTGTTCAGTCACATCTAATGAAGCTAGTCAATTGAAATCACAGATCCAGCATCTCAAGGA 455
Query 552 TGCTATTGAGAAGCTTCTGATCTAAGGCATTCTCTGAATTGATTGCTCGGTATGATGGGT 611
|||||||||||||||||| ||||||||| ||||| | |||| ||||||||||||||||||
Sbjct 456 TGCTATTGAGAAGCTTCTTATCTAAGGCCTTCTCCG-ATTGCTTGCTCGGTATGATGGGT 514
Query 612 CTCCGCGAATGGGAAGGCTTTGACTGAAGTTTTGTTTAGGCAACTACCAAATCAAAAACC 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 515 CTCCGCGAATGGGAAGGCTTTGACTGAAGTTTTGTTTAGGCAACTACCAAATCAAAAACC 574
Query 672 GTCCATTATTCTACTATCTTCTCTTCAAGTTTGTAACGTAATTCACTTTTCTGCAACTTG 731
|||||| |||||||||||||| ||| ||||||||||||||||||||||||||||| ||
Sbjct 575 GTCCATGATTCTACTATCTTCACTTAAAGTTTGTAACGTAATTCACTTTTCTGCATTTTC 634
Query 732 -GTTTCTTAAGAATTTGTGTTGGTTTCTGGTTTTGGTTTGTAGCGAATCATTGT-GTTAT 789
||||||||||| | ||| |||||| ||||||||||||||||||||||||||| || ||
Sbjct 635 AGTTTCTTAAGAGT--GTGCTGGTTTTTGGTTTTGGTTTGTAGCGAATCATTGTCGT-AT 691
Query 790 TTATAAGAACTTGTTTTGA 808
|||| ||||||||||||||
Sbjct 692 TTATGAGAACTTGTTTTGA 710
Score = 351 bits (190), Expect = 4e-96
Identities = 209/218 (96%), Gaps = 2/218 (1%)
Strand=Plus/Plus
Query 1 AAGCCTAAGTTATCATTCAGAATATTCAAGCTGAGAAAGTCGTAGCCTCTAAAACCCTAA 60
|||||||| || ||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1 AAGCCTAAATTCTCATTCAGAATCTTCAAGCTGAGAAACTCGTAGCCTCTAAAACCCTAA 60
Query 61 TCCTCTCTGAAACCCTAGAC-ATCGCAGCTGAAAATGACCGGAGAAGTCGTCAACCCTAA 119
|||||||||||||||||| | |||||||||||||||||||||||||| ||| ||||||||
Sbjct 61 TCCTCTCTGAAACCCTAG-CAATCGCAGCTGAAAATGACCGGAGAAGCCGTTAACCCTAA 119
Query 120 AGCGTATCCGCTTGCAGATTCTCAGTTATCGATAACAATTCTTGACCTCGTTCAACAAGC 179
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 120 AGCGTATCCGCTTGCAGATTCTCAGTTATCGATAACGATTCTTGACCTCGTTCAACAAGC 179
Query 180 TACTAACTACAAGCAGCTCAAGAAGGGTGCTAATGAAG 217
||||||||||||||||||||||||||||||||||||||
Sbjct 180 TACTAACTACAAGCAGCTCAAGAAGGGTGCTAATGAAG 217
> Ahg492625 jgi|Araly1|492625|fgenesh2_kg.7__2058__AT4G22380.1
Length=558
Score = 159 bits (86), Expect = 2e-38
Identities = 116/130 (89%), Gaps = 4/130 (3%)
Strand=Plus/Plus
Query 90 GAAAATGACCGGAGAAGTC-GTCAACCCTAAAGCGTATCCGCTT-GCAGATTCTCAGTTA 147
||| ||| | |||| || | || |||||||||||||||||| || ||||||||||| |||
Sbjct 74 GAAGATGGCGGGAG-AGGCAGTGAACCCTAAAGCGTATCCG-TTAGCAGATTCTCACTTA 131
Query 148 TCGATAACAATTCTTGACCTCGTTCAACAAGCTACTAACTACAAGCAGCTCAAGAAGGGT 207
||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 132 TCGATAACAATACTGGACCTCGTTCAACAAGCTACTAACTACAAGCAGCTTAAGAAGGGA 191
Query 208 GCTAATGAAG 217
||||||||||
Sbjct 192 GCTAATGAAG 201
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32175741948
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5