BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G20165.3

Length=783
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg488920 jgi|Araly1|488920|fgenesh2_kg.6__2054__AT5G20165.1         327    5e-89


> Ahg488920 jgi|Araly1|488920|fgenesh2_kg.6__2054__AT5G20165.1
Length=439

 Score =  327 bits (177),  Expect = 5e-89
 Identities = 206/219 (94%), Gaps = 5/219 (2%)
 Strand=Plus/Plus

Query  128  GCTTCAAAACCCTAATTTCTCTAGCCATTAGCATCGATTTCAGCTCAACTTCAGATTCAA  187
            |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct  1    GCTTCAAAACCCTAATTTCTGTAGCCATTAGCATCGATTTCAGCTCAAATTCAGATTCAA  60

Query  188  GGAAACAATTA--TTAGCTTCTCAAGTG---CTTCAGTGATCCGATACAATGTCAGCTTT  242
            |||||||||||  |||||||||||||||   ||||||||||| || ||||||||||||||
Sbjct  61   GGAAACAATTATTTTAGCTTCTCAAGTGCTACTTCAGTGATCAGACACAATGTCAGCTTT  120

Query  243  GTTCAATTTCCATTCGTTTCTGACGGTGGTGCTGCTTGTGATCTGCACATGCACATATCT  302
            |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct  121  GTTCAATTTCCATTCGTTTCTGACGGTGGTGCTGCTTGTGATCTGCACTTGTACATATCT  180

Query  303  GAAGATGCAGTTCCCTGCCATTTTAGAGCAGAAAACTGG  341
             ||||||||||||||||||||||| ||||||||||||||
Sbjct  181  CAAGATGCAGTTCCCTGCCATTTTGGAGCAGAAAACTGG  219


 Score =  171 bits (92),  Expect = 1e-41
 Identities = 98/101 (97%), Gaps = 0/101 (0%)
 Strand=Plus/Plus

Query  630  ATTTTTCTGTATGCAAAAGATTCCAAGGGGTTGTTGATGAAACTGAAAGAGTAGAATATT  689
            ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct  339  ATTTTTCTGTATGCAAAAGATTCCAAGGGGTTGTTGATGAAACCGGAAGAGTAGAATATT  398

Query  690  ATCCTCTTTGGATTATGGATATGGTCTTGTATTTGGAACAA  730
            ||||||||||||||||||||||| |||||||||||||||||
Sbjct  399  ATCCTCTTTGGATTATGGATATGATCTTGTATTTGGAACAA  439


 Score =  150 bits (81),  Expect = 1e-35
 Identities = 86/88 (98%), Gaps = 1/88 (1%)
 Strand=Plus/Plus

Query  504  ATA-GTGAGCGTTTGAGCCCTTGGGTCTCCGCTGGATGCTTCATGATGGGTGTGTCGATC  562
            ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  251  ATAGGTGAGCGTTTGAGCCCTTGGGTCTCGGCTGGATGCTTCATGATGGGTGTGTCGATC  310

Query  563  ATTTTCTTTTGAGTGTCAACTTCTTACA  590
            ||||||||||||||||||||||||||||
Sbjct  311  ATTTTCTTTTGAGTGTCAACTTCTTACA  338



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28897171086


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5