BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G20170.1
Length=2104
Score E
Sequences producing significant alignments: (Bits) Value
Ahg351112 jgi|Araly1|351112|fgenesh1_pg.C_scaffold_6001705 3088 0.0
> Ahg351112 jgi|Araly1|351112|fgenesh1_pg.C_scaffold_6001705
Length=1959
Score = 3088 bits (1672), Expect = 0.0
Identities = 1864/1957 (95%), Gaps = 12/1957 (1%)
Strand=Plus/Plus
Query 70 ATGGATAGCGACATGGAAATCTCTCTCGACAGGCTTCCCATTAAACGATTGGAATCTATC 129
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1 ATGGATAGCGACATGGAAATCTCTCTCGACAGGCTTCCCATAAAACGATTGGAATCTATT 60
Query 130 GAAGAAAATGGCGCCGAGCGTTTTCCTTCTGATGTTGATTACGATGATAAGAGAGTATCG 189
|| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 61 GAGGAAAATGGCGCCGAGCGTTTTCCGTCTGATGTTGGTTACGATGATAAGAGAGTATCG 120
Query 190 CTGATTCGGAGAATAGACTTCGCGTGGGCGTTGgaagaggaagatgagctgaagaagaag 249
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 CTGATTCGGAGGATAGACTTCGCGTGGGCATTGGAAGAGGAAGATGAGCTGAAGAAGAAG 180
Query 250 aagcagaagaaaagCTCCAAGGATAGCGTGGAGCAATGGAAATGGAAGGGAATGGTTGAG 309
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 181 AAGCAGAAGAAGAGCTCCAAGGATAGCGCGGAGCAATGGAAATGGAAGGGAATGGTTGAG 240
Query 310 AATTTGCAATTGGCTCATCAGGAGCTCACTGTCATCATTGACCTTATCGACACAGTCCAA 369
||||||||||||||||||||||||||| |||| ||||| |||||||||||||| ||||||
Sbjct 241 AATTTGCAATTGGCTCATCAGGAGCTCTCTGTTATCATAGACCTTATCGACACTGTCCAA 300
Query 370 GCAAATGATGCAGTAACAGTTGCTGGGATGACCAGACCTAAGCCGATGCCGAATGAGATT 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GCAAATGATGCAGTAACAGTTGCTGGGATGACCAGACCTAAGCCGATGCCGAATGAGATT 360
Query 430 CTCTCGGATCTTGCTGTGTCTACTGCTACCAAGCTGCAGGGCTACCGGAATTTAGGAAAC 489
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 361 CTCTCGGATCTTGCTGTGTCTACTGCTACCAAGTTGCAGGGCTACCGGAATTTAGGAAAC 420
Query 490 TACTTTAAACAATCAGCAAAAGCTTTAGAGCAGAAAATCAATCGTGAAGCAAGGTTTTAT 549
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 421 TACTTTAAACAATCAGCAAAAGCTTTAGAGCAGAAAATCAACCGCGAAGCAAGGTTTTAT 480
Query 550 GGTGCTCTTATCAGGTTGCAGCGGAACTGGAAAGTCAAGCGACAACGCATGCTTGCTTCA 609
|| ||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 481 GGCGCTCTGATCAGGTTGCAGCGGAACTGGAAAGTTAAGCGACAGCGCATGCTTGCTTCA 540
Query 610 AATGCCAGCAATGAGGGCTTCACCATTGATCTTTCTGACAGTTCATTATATGATCCGACT 669
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 541 AATGCCAGCAATGAGGGCTTCACCATTGATCTTTCTGACAGTTCATTACATGATCCGACT 600
Query 670 TCTGGTTTTCGCCCATCTACACTGTCCACTATTCGTGTAGATCATGATTCAGCTGGTATG 729
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 601 TCTGGTTTTCGCCCATCTACACTGCCCACTATTCGTGTAGATCATGATTCAGCTGGTATG 660
Query 730 CTGGCCATTAATGTACCCCAAGATTCATGGTACTCTCTTCGGTTTGGGTATGTTGGCTTA 789
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 661 CTGGCCATTAATTTACCCCAAGATTCATGGTACTCTCTTCGGTTTGGGTTTGTTGGCTTA 720
Query 790 AATCCGATTGGCAACTCAAACGAATCTGATGAGCACATAGACTCGACTACTGGTC-ACGA 848
|||||||||| |||| ||||||| |||| ||||||| ||||||| |||| ||| | ||||
Sbjct 721 AATCCGATTGACAACACAAACGAGTCTGGTGAGCACCTAGACTCCACTA-TGGGCCACGA 779
Query 849 TATCCCTGGAACATCAGAGAAGTTGTCTGCAAGTGACGACAAATATGTTAAAGAAACTCA 908
|||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 780 TATCCCTGGAACATCAGAGAAGCAGTCTGCAAGTGACGACGAATATGTTAAAGAAACTCA 839
Query 909 TTCGCTACTGAGGGAGGTGCATAAATCAATTTTTGCTGAGCAG-T-T-GTTTGACATGCT 965
||| ||||||||||||||||||||||||||||||||||||||| | | |||||||||| |
Sbjct 840 TTCACTACTGAGGGAGGTGCATAAATCAATTTTTGCTGAGCAGGTGTTGTTTGACATGGT 899
Query 966 AAATCGTGAAGCATTCAATGAAGGTGTGGGATTCAACATAAGTGGACTACGAGAAAATTT 1025
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 900 AAATCGTGAAGCATTCAATGAAGGTGTGGGATTCAACATTAGTGGAGTACGAGAAAATTT 959
Query 1026 TATGGAAATGAGCATCGGCCAAGGAGCTTCTCTGTTTGTGTCTCTCCACCCATCAGGCAA 1085
||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||
Sbjct 960 TATGGAAATGAGCATCGGCCAAGGAGCTTCTTTGTTTGTATCTCTCAACCCATCAGGCAA 1019
Query 1086 AAATCCCAGCATCAAGAAGTCGGAATCTGCAACCTTGCTCATTGAATCATCTGGCAGAGT 1145
||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
Sbjct 1020 GAATGCCAGCATCAAGAAGTCGGAATCTGCAATCTTGCTCATTGAATCTTCTGGCAGAAT 1079
Query 1146 AGAACCAGCAGAAGGAGGAGACTATCGCTTGAAGAAGCTAGGGTTCCCTAATCGCACCAG 1205
||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||
Sbjct 1080 AGAACCAGCAGAAGGAG-A--CTATCGCTTGAAGAAGCTAGGGTTCCCTAATCGCGCCAG 1136
Query 1206 CTATGAAATATACTTGCAACAAATTTTTCACGAGCATGCCTTTGGAAAAGCTAAAGATCA 1265
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1137 CTATGAAATATACTTGCAACAAATTTTTCATGAGCATGCCTTTGGAAAAGCTAAAGATCA 1196
Query 1266 G-CTCAAGTCAAAAAGTATCAGAGCATCCAATCAAACA-GAAAAGGACAGCAACTCCGGA 1323
| | |||||||||||||||| ||||||||||||||||| |||| |||||||||||| |||
Sbjct 1197 GGC-CAAGTCAAAAAGTATCCGAGCATCCAATCAAACAAGAAA-GGACAGCAACTCTGGA 1254
Query 1324 CTTCTTGACCATTTCTGCTTATCTTTGACTCATAGAATCTTCTCAAATAGAGTTCTTGTG 1383
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1255 CTTCTTGATCATTTCTGCTTATCTTTGACTCATAGAATCTTCTCAAATAGAGTGCTTGTG 1314
Query 1384 CATCTTGAAAGCGTGGTCTGCAAGGTCCCGTATCTTCATCTGATATCTCATCCTACATGG 1443
||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 1315 CATCTGGAAAGCGTGGTCTGCAAGGTCCCATATCTTCATTTGATATCTCATCCTACATGG 1374
Query 1444 AATTCTCGGACATCGTCATGGACTGTCTTCATGACTGTTCCTCCATCAATCATCCCCCAA 1503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1375 AATTCTCGGACATCGTCATGGACTGTCTTCATGACTGTTCCTCCATCAATCATCCCCCAA 1434
Query 1504 GGAAGGTCTGAAACCCAGTCTCCTGATGGTAAGAGGAATCTTAAGACGCAGTTCCGGACA 1563
||||| ||||||||||||||||| ||||||||||||||| | ||||||||||||||||||
Sbjct 1435 GGAAGTTCTGAAACCCAGTCTCCAGATGGTAAGAGGAATGTGAAGACGCAGTTCCGGACA 1494
Query 1564 AAAGTGGTGGTGAAGGATGATTGTATTAGTGTTGAAGCGGAATGCACGCCCAATGTGGTT 1623
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1495 AAAGTGGTGGTGAAGGATGAGTGTATTAGTGTTGAAGCCGAATGCACGCCCAATGTGGTT 1554
Query 1624 GGCTTACTCAAAAGCAGTTCCTGCAATCTATTCTCTATAAACAAATACGAGTGCGACGTG 1683
||||||||||||||||| ||||||||| ||||| |||| |||||||| ||||||| ||||
Sbjct 1555 GGCTTACTCAAAAGCAGCTCCTGCAATTTATTCGCTATGAACAAATATGAGTGCGGCGTG 1614
Query 1684 GCCGACCTTCCCGTGATGATTCTCCAACAGGTGGCGAGCCAGATAGTGTGTTGGCTACTG 1743
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1615 GCCGACCTTCCCGTGATAATTCTCCAACAGGTGGCAAGCCAGATAGTGTGTTGGCTACTG 1674
Query 1744 GAGGAAGCACGGACGGTAGGGACAAAAGCGAGCAGGGAATTTCTGTCACTATCGTTAGAG 1803
||||||||||| || ||||| | |||||||||| |||| |||||||| ||||| ||||||
Sbjct 1675 GAGGAAGCACGTACAGTAGGTATAAAAGCGAGCCGGGATTTTCTGTCGCTATCATTAGAG 1734
Query 1804 ATAGTGGAAGGGGAGAGAGTGAGCCTGGTGGCGCATGTAAACCCGGAAGACGCAAAAGGA 1863
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1735 ATAGTGGAAGGGGAGAGAGTGAGCCTGGTGGCGCAAGTAAACCCGGAAGACGCAAAGGGA 1794
Query 1864 TGCATCTCGTGGTGGCTAGTGATGGAGAATGGATGCACAGAGGAGAGGGAAGGAGTGTCG 1923
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1795 TGCATATCGTGGTGGCTAGTGATGGAGAATGGATGCACAGAGGAGAGGGAAGGAGTGTCG 1854
Query 1924 GAGAGTAGGAAGTTGTTGGGTCATTTGTCTCTGGATGTCTTGTACTCTGTTCTCATGGAT 1983
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1855 GAGAGTAGGAAGTTGTTGGGTCATTTGTCTCTCGATGTCTTGTACTCTGTTCTCATGGAT 1914
Query 1984 TTGATCAACTTGTGTGGTACTGGTCGCAATGCTTTAG 2020
|||||||||||||||||||||||||||||||||||||
Sbjct 1915 TTGATCAACTTGTGTGGTACTGGTCGCAATGCTTTAG 1951
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79151529110
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5