BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G20180.1
Length=636
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488922 jgi|Araly1|488922|fgenesh2_kg.6__2056__AT5G20180.1 662 0.0
Ahg936120 jgi|Araly1|936120|scaffold_500311.1 180 1e-44
> Ahg488922 jgi|Araly1|488922|fgenesh2_kg.6__2056__AT5G20180.1
Length=493
Score = 662 bits (358), Expect = 0.0
Identities = 406/429 (95%), Gaps = 4/429 (1%)
Strand=Plus/Plus
Query 2 AAACTCCTCCGTAAAACCCTTTCATTTGCATTTGGGAATCGATTGCTCTTCTTCGTAGTC 61
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 AAACTCCTCCGTAAAACCCTTTCATTTGCATTTGGGAATCGATCGCTCTTCTTCGTAGTC 60
Query 62 GCCTTTGAATTCGCAGAGTGA-GAAGCAATGAAGGTGAGATCATCTGTGAAGAAGATGTG 120
||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||
Sbjct 61 GCCTTTGAATTCGCAGAGTGAGGAA-CCATGAAGGTGAGATCATCTGTGAAGAAGATGTG 119
Query 121 TGAGTTTTGTAAAACAGTGAAACGTCGTGGACGTGTGTATGTTATATGCTCTTCCAATCC 180
|||||||||||||||||||||||||||||||||||| ||| | ||||| |||||||||||
Sbjct 120 TGAGTTTTGTAAAACAGTGAAACGTCGTGGACGTGTCTATATCATATGTTCTTCCAATCC 179
Query 181 TAAGCACAAGCAAAGACAAGGGTTCAGTTCCTTTGCTTATGAAGGAATTACACCTTCCCC 240
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 180 TAAGCACAAGCAAAGACAAGGGTTCAGCTCCTTTGCTTATGAAGGAATTATACCTTCCCC 239
Query 241 TTTGTT-TGCTGAGCCGATTGCTAGTCAGGAGTTGGTGAGGCTGCCTGGTCAGGGGGTAT 299
||||| | ||||| ||||||||||||||||| || |||||||||||||||||| |||
Sbjct 240 GTTGTTGT-CTGAGTCGATTGCTAGTCAGGAGATGACGAGGCTGCCTGGTCAGGGCATAT 298
Query 300 CAGCCGGACTGGCATCACTTTTACACAAAAGGCCTATGCCAACAGCGTATTTCGGATGGA 359
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 299 CAGCCGGTCTGGCATCACTTTTACACAAAAGGCCTATGCCAACAGCGTTTTTCGGATGGA 358
Query 360 GGTCTGGTCTTGCATCCATTCTCTTCAAACAAGGAAATTAGGATGTCAGCATTTCCCTTT 419
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GGTCAGGTCTTGCATCCATTCTCTTCAAACAAGGAAATTAGGATGTCAGCATTTCCCTTT 418
Query 420 TTATTCTTC 428
|| ||||||
Sbjct 419 TTTTTCTTC 427
Score = 84.2 bits (45), Expect = 1e-15
Identities = 49/51 (96%), Gaps = 0/51 (0%)
Strand=Plus/Plus
Query 462 TGAAACATTATTGTATATCTCTCCACTTTTACTTTGGTCAGTCGTATGCTC 512
||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 443 TGAAACATTATTGTATATCTCTCCACTTTTACTTTGGTCAGTCATAGGCTC 493
> Ahg936120 jgi|Araly1|936120|scaffold_500311.1
Length=239
Score = 180 bits (97), Expect = 1e-44
Identities = 161/189 (85%), Gaps = 16/189 (8%)
Strand=Plus/Plus
Query 69 AATTCGCAGAGTGA-GAAGCAATGAAGGTGAGATCATCTGTGAAGAAGATGTGTGAGTTT 127
|||| ||||||||| ||| | |||||||||||||||| ||||||| ||||||||||||||
Sbjct 3 AATT-GCAGAGTGAGGAA-CCATGAAGGTGAGATCATATGTGAAGCAGATGTGTGAGTTT 60
Query 128 TGTAAAACAGTGAAACGTCGTGGACGTGTGTATGTTATATG--CT-C--TTC--CAAT-C 179
|||||||||||||||||||| |||||||| ||| |||| | || | ||| | || |
Sbjct 61 TGTAAAACAGTGAAACGTCGAGGACGTGTCTATATTATCTTTTCTTCGGTTCTTCCATTC 120
Query 180 CTAAGCACAAGCAAAGA----CAAGGGTTCAGTTCCTTTGCTTATGAAGGAATTACACCT 235
||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||
Sbjct 121 CTAAGCACAAGCAAAGAAAGACAAGGGTTCAGCTCCTTTGCTTATGAAGGAATTATACCT 180
Query 236 TCCCC-TTT 243
| ||| |||
Sbjct 181 TTCCCGTTT 189
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23293102287
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5