BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G20190.1
Length=1081
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488924 jgi|Araly1|488924|fgenesh2_kg.6__2058__AT5G20190.1 1598 0.0
> Ahg488924 jgi|Araly1|488924|fgenesh2_kg.6__2058__AT5G20190.1
Length=1075
Score = 1598 bits (865), Expect = 0.0
Identities = 1018/1089 (93%), Gaps = 22/1089 (2%)
Strand=Plus/Plus
Query 1 ATGCTTCTACGAAGCGCTTCAACGCCACTTCTAAACTCATTGGTTCATGTCTCGAGTCCA 60
||||||||||||||||| ||||||||| |||| || ||||||||||||||||||||||||
Sbjct 1 ATGCTTCTACGAAGCGCGTCAACGCCAGTTCTCAATTCATTGGTTCATGTCTCGAGTCCA 60
Query 61 AGAGATTCTCCAATCGAAACCGTTGAATCTGTTCATCAGATTCAACGACACAGATCCATA 120
|| || |||||||||||| | |||||||||||||||||||||||| |||| |||| ||
Sbjct 61 AGGGAATCTCCAATCGAAGCTACTGAATCTGTTCATCAGATTCAACGGCACAAATCCTTA 120
Query 121 ACACTCTCTGCGTCTTCTTCCTCTTGCTGTTATAGCCCGATGTCTGTACACTCTAGCGAC 180
| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 121 AAACTCTCTGCGTCTTCTTCCTCTTGCTGTTATAGCCCGATGTCTGTAAACTCTAGTGAC 180
Query 181 GATTCTTCAAGGAGGATGAAAAGAACGGCGTCAGATAGCGATCTACGACATTTGACATCG 240
|| ||| ||||| |||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 181 GAATCTACAAGGTGGATGAAAAGGACGGCGTCAGAAAGCGATCTACGACATTTGACATCG 240
Query 241 ACGAAACCGCCGGTGAGTAAGTTTTTGAGCGGTGGTGCTTTGATGGAGGATGTGGATGAA 300
||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||
Sbjct 241 CCGAAACCGCCGGTGAGTAAGTTTTTGAGCGGTGGTGCTTTGCTGGAGGATATGGAAGAA 300
Query 301 GGAATCGGATTCGGTCTTATACGCACTTCGTCTTATGATGGTATAAGTTGGGCTTTGGAT 360
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 301 GGAATTGGATTCGGTCTTATACGCACGTCGTCTTATGATGGTATAAGTTGGGCTTTGGAG 360
Query 361 GAAGATACTGAGGTTGCTGGCGGTGGTGGTGGTGGGATGTTTCACGGTGGAGGAAAAGGA 420
||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 361 GAAGATACTGAGGTTACTGGCGGTGGTGGTGGTGGAATGTTTCACGGTGGAGGTAAAGGA 420
Query 421 AGGAGTGGTGGTAGATCTGATGGTGGTGATGGAGGTGACGATAACACTGATGTTCATTAT 480
|||||||||||||||||||| | | | | ||||||||||| |||||||||||||||
Sbjct 421 AGGAGTGGTGGTAGATCTGA---T-G-G-T---GGTGACGATAATACTGATGTTCATTAT 471
Query 481 CGTAAGATGATTGAAGCTAATCCTGGAAATGGGATTTTTCTCAGTAATTATGCTAAATTC 540
|||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct 472 CGTAAGATGATTGAAGCTAATCCTGGAAATGGGATTTTTCTCAGCAATTACGCCAAATTC 531
Query 541 CTGAAGGAGGTTAGAAAAGATTACTTGAAAGCAGAGGAATATTGTGGGAGAGCTATTCTG 600
||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 532 TTGAAGGAGGTTCGAAAAGATTACTTGAAAGCAGAGGAATATTGTGGAAGAGCTATTCTG 591
Query 601 GTGAGTCCTAATGATGGGAATGTTCTGGCTATGTACGCTGAGTTGGTTTGGAAGATCCAT 660
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 592 GTGAGTCCTAATGATGGGAATGTTCTAGCTATGTACGCTGAGTTGGTTTGGAAGATCCAT 651
Query 661 AAGGATTCATCTCGTGCTGAGAATTACTTCAATCAAGCTGTTGCAGCTGCTCCTGAGGAC 720
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 652 AAGGATTCATCTCGTGCTGAGACTTACTTCAATCAAGCTGTTGCAGCTGCTCCTGAGGAC 711
Query 721 TGTTATGTACAAGCTTCGTATGCACGGTTTCTATGGGATGCTgaagaggaagaagaagag 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 TGTTATGTACAAGCTTCGTATGCACGGTTTCTATGGGATGCTGAAGAGGAAGAAGAAGAG 771
Query 781 gaaaaggaagagagacatgaagaagaaCTTGAGCATCAAACTTCTCGAATGAATTTCTTC 840
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 772 GAGAAGGAAGAGAGACATGAAGAAGAACTTGAACATCAAACTTCTCGAATGAATTTCTTC 831
Query 841 ACCGGACCTTCTCCAATCACGGCCATGTCTTAAACTCGTGGTCGGCATTACCATCC--T- 897
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 832 ACCGGACCTTCTCCAATCACGGCCATGTCTTAAACTCGTGGTCGGCATTACCATCCAGTC 891
Query 898 TT--ATA--GATTTAGATAAACGTGTCACGTCTATGATTTTATTATCTAACCCTTTTGTT 953
|| ||| |||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 892 TTTTATATAGATTTAGATATACGTGTCACGTCTATGATTTTAT---CTAACCCTTTTGTT 948
Query 954 TAATGTGAATTCTTTAGCTAAGCCTTTTTATGGGTATTTCTTTACTCGGTGTTAGAATTT 1013
||||||||||||||||| |||||||||| |||||| ||||| | |||||||||| |||||
Sbjct 949 TAATGTGAATTCTTTAGTTAAGCCTTTT-ATGGGTGTTTCTCTGCTCGGTGTTAAAATTT 1007
Query 1014 GTCTCAGTTGTAGTAATACCACTGAAAGAATAATAAGATATGCAATAAACAATTT-GCTT 1072
||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||
Sbjct 1008 GTCTCAGTTGTAGTAATACCACTGAAAGAATAATAAGATATGCAATAAA-AGTTTTGCTT 1066
Query 1073 TTTGGTTGG 1081
|||||||||
Sbjct 1067 TTTGGTTGG 1075
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40257800352
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5