BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G20200.1
Length=2548
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488925 jgi|Araly1|488925|fgenesh2_kg.6__2059__AT5G20200.1 3611 0.0
> Ahg488925 jgi|Araly1|488925|fgenesh2_kg.6__2059__AT5G20200.1
Length=2510
Score = 3611 bits (1955), Expect = 0.0
Identities = 2352/2537 (93%), Gaps = 53/2537 (2%)
Strand=Plus/Plus
Query 38 TTGAGAAAGGAACACTGAAACAAAGAGAGTTCATGGCCACTCAAGGAGAAGCGACGTTCT 97
|||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1 TTGAGAAACGAACACTGAAACAAAGAGAGCTCATGGCCACTGAAGGAGAAGCGACGTTCT 60
Query 98 CCGCGGCCGCGA---CGA---CGACGTCGAGCTATCCGACGGGAGGTGTTGGTGGCAAAT 151
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCGCGGCCGCGACCGCGACGGCGACGTCGAGCTATCCGACGGGAGGTGTTGGTGGCAAAT 120
Query 152 TGAAGCGGCAATCGGCGAGGAGGCATGCGGCGACACCTTATTCTCGACCAACACAGAACC 211
||||||||||||| |||||||||||| ||||||| || |||||||||||| |||||||||
Sbjct 121 TGAAGCGGCAATCCGCGAGGAGGCATTCGGCGACGCCGTATTCTCGACCACCACAGAACC 180
Query 212 AGGTACAACGGAGGCCGTGGATCTCGAGAATCGTCGATCCTGCTTATCGGATTATTTCCG 271
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 181 AGTTACAACGGAGGCCGTGGATCTCGAGAATCGTCGATCCTGCTTATCGGATTATCTCAG 240
Query 272 GCGGCGCTACCAGAATACTTCCATATTTCTTCTCGAACGCCGCCTCCGCTCCTGCTCTTG 331
|||||||||| ||||||||||||||||||||||| || ||| ||||| |||||||||||
Sbjct 241 GCGGCGCTACGAGAATACTTCCATATTTCTTCTCCAAAGCCACCTCCCCTCCTGCTCTTA 300
Query 332 CTGCTCCTCCAGAGGATCAAAATCAACATCAAGGTGAGTTGCAGAATAATCCAC-AGGAC 390
||| |||||||||||||| |||||||||||||||||||||||||| ||||| | |||
Sbjct 301 CTG---CTCCAGAGGATCAAGATCAACATCAAGGTGAGTTGCAGAATGGTCCACTA-GAC 356
Query 391 AATGATCCCAGTGTAACCCCAA-TTTCAAATAAACCGGAGCCAGCATCAATTGAAGTGGG 449
|||||| ||||||||||||||| ||| ||||||||||||| |||||||||||||||||||
Sbjct 357 AATGATACCAGTGTAACCCCAAGTTT-AAATAAACCGGAGTCAGCATCAATTGAAGTGGG 415
Query 450 AGGTCCTAGTGGTACTGCAAACGTGAACGAAGGCAATTTCAGTATCAGTGCACAGAGAAG 509
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 416 AGGTCCTAGTGGTACAGCAAACGTGAACGAAGGCAATTTCAGTATCAGTGCACAGGGAAG 475
Query 510 AGGGAAAGCAGCTTTAAATGACGACGTTGCAATCTCGGAGCTTGAAAGGCTAATGGAAGG 569
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 476 AGGGAAAGCAGCTTTAAATGACGCCGTTGCAATCTCGGAGCTTGAAAGGCTAATGGAAGG 535
Query 570 AAAAACGTTTTCACAAGCTGAAATTGATCGTCTCATAGAGATGATAAGTTCGAGGGCTAT 629
|||||| ||||||||||| |||| |||||||||||||||||| |||||||| ||||||||
Sbjct 536 AAAAACATTTTCACAAGCCGAAACTGATCGTCTCATAGAGATAATAAGTTCAAGGGCTAT 595
Query 630 TGATCTACCTGATGTCAAGAGAGACGAGAGAAATTTGGAGATTCCTTTGAGAGAGGGAGC 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 TGATCTACCTGATGTCAAGAGAGACGAGAGAAATTTGGAGATTCCTTTGAGAGAGGGAGC 655
Query 690 CAAGAAAAATATGAGTTTATTTGATAAGGCAAAAGAGCCCATTGGTGGCAAGGATGCTAA 749
||||||| ||||| |||| ||||||||| ||| ||| |||||||||| ||||||||||||
Sbjct 656 CAAGAAAGATATGTGTTTCTTTGATAAGACAAGAGATCCCATTGGTGTCAAGGATGCTAA 715
Query 750 TAGTGAAATATGGGCTACACCAACCCCACTTGCAAAGTCAATA---A------TACTTGA 800
||||||| ||||||||||||||||||||||||| ||||||||| | |||||||
Sbjct 716 TAGTGAACTATGGGCTACACCAACCCCACTTGCCAAGTCAATAGTGAGTTGTTTACTTGA 775
Query 801 CGGAGA-CAA-A-ATACGAGATGAAGTTGGTCTTTCACCGGCAGAACTTGCCAAGGCATA 857
|||||| || | |||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 776 CGGAGATAAACAGATACAAGATGAAGTTGGTCTTTCACCGGCAGAACTTGCTAAGGCATA 835
Query 858 TATGGGAGGTCAGACATCATCAAGTAGTTCCCAAGGTTTTGTAGCAAGAAATGAAAAGGA 917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 TATGGGAGGTCAGACATCATCAAGTAGTTCCCAAGGTTTTGTAGCAAGAAATGAAAAGGA 895
Query 918 TTGTTTAGATAGGAGTATGCTTGTAGGGAAATCATCACTTGCATCACCATCAAGCAAGCC 977
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 896 TTGTTTAGATAGGAGTATGTTTGTAGGAAAATCATCACTTGCATCACCATCAAGCAAGCC 955
Query 978 TTCTGCTTGTTGGCCTGGTATCAAGTCAAGTGAGCAATCTGGTTTTGCAACTCCTCAAAG 1037
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 TTCTGCTTGTTGGCCTGGTATCAAGTCAAGTGAGCAATCTGGTTTTGCAACTCCTCAAAG 1015
Query 1038 CCGACGAGAGAGCTATGGGCTTCAAAATTTTCCAAGGACTCCTTATTCTAGAACCATTCT 1097
|||| |||| ||||||||||||||||||||||||||||| || |||||||||||||| ||
Sbjct 1016 CCGAAGAGAAAGCTATGGGCTTCAAAATTTTCCAAGGACCCCATATTCTAGAACCATCCT 1075
Query 1098 TTCAAATTCTAAGTCAAAGTTGATGCAATTGCAGAACGATAGTAGCAAGCACCTAAGCAA 1157
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 1076 TTCAAATTCTAAGTCAAAGTTGATGCAATTGCAGAACGATAGTAGCAAGCGCCTAGGCAA 1135
Query 1158 CCTCCAGTCTCCCTCTCAAAGTGTGGAGAGAAGATATGGCCAGCTTAGCAAGGGAAGGGA 1217
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 1136 CCTCCAGTCTCCCTCTCAAAGTGTGGAGACAAGATATGGCCAGCTTAGCAAAGGAAGGGA 1195
Query 1218 TGGTGGACTTTTTGGACCCAGTAGAAGAACTCGTCAGAGCGCCACGCCGTCCATGGTGTC 1277
|||||||||||||||||||||||||||| ||||||||||| | | ||||||| |||||||
Sbjct 1196 TGGTGGACTTTTTGGACCCAGTAGAAGATCTCGTCAGAGCTCTATGCCGTCCTTGGTGTC 1255
Query 1278 TCCTTATTCACGACCTTCCCGTGGTGCATCTCGTTTTGAAAATTCTGCTATCATGAAGAG 1337
|||||||||||||||||| |||||| |||||| |||||||||||| |||||||||||||
Sbjct 1256 TCCTTATTCACGACCTTCGCGTGGTATATCTCGCTTTGAAAATTCTTCTATCATGAAGAG 1315
Query 1338 CTCTGAAGCAGGGGAATCAAGTTACCTATCTAGGTCCCAGATAACAACTTATGGTAAGCA 1397
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 1316 CTCTGAAGCAGGGGAATCAAGTTACCTATCTAGGTCCCAGACAACAACTTACGGTAAGCA 1375
Query 1398 TAAAGAGGCAGAAGTTGGTACCCTGACTGTGCCTACACATTCTAGTCAGATTGCTAGGAC 1457
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1376 TAAAGAGTCAGAAGTTGGTACCCCGACTGTGCCTACACATTCTAGTCAGATTGCTAGGAC 1435
Query 1458 AATATTGGATCACCTTGAACGGACCCAATCCCAATCCACCCCAAAAAATAAAACTGCCGA 1517
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||
Sbjct 1436 AATATTGGATCACCTTGAACGGACCCAATCCCAATCCACCCCGAAAAATAAATCTGCTGA 1495
Query 1518 GTTAAAGCTTGCCACTTCCTGGAGACATCCACAGTCTTCGAAAACCGTTGAAAAAAGCAG 1577
||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||
Sbjct 1496 GTTAAAGCTTGCCACTTCCTGGAGATATCCACAGTCTTCGAAAACCATTGAACAAAGCAG 1555
Query 1578 CTCGGACGTCACCAATGTGAAAAAGGATGGCTCAGCTAAATTGCATGAAGATATCCAGAA 1637
|||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1556 CTCGGATGTCAACAATGTGAAAAAGGATGGCTCAGCTAAATTGAATGAAGATATCCAGAA 1615
Query 1638 CATTTTCTCTCAGAATCAGCCATCCTCTGTTCTTAAACCACCTGCAACTACCACTGGTGA 1697
||||||||||||||| | | |||||||||| ||||||| ||| |||||||||||||||||
Sbjct 1616 CATTTTCTCTCAGAAGCTGTCATCCTCTGTGCTTAAACAACCCGCAACTACCACTGGTGA 1675
Query 1698 CATTCAAAATGGAATGAACAAGACCGCTTCAGCGACAAATGGAATATTCCGTGGAACACA 1757
|| ||||||||||||||||||||||||||||| | | |||||||||||||||||||||||
Sbjct 1676 CACTCAAAATGGAATGAACAAGACCGCTTCAGTGTCCAATGGAATATTCCGTGGAACACA 1735
Query 1758 AGCAGCAAGTAGCGGTGGTAACGCACTCCAATATGAGTTTGGGAAGCCTAAGGGTTCTCT 1817
|||||||||| | |||| ||||||||||||| ||||||||||||||||||||
Sbjct 1736 AGCAGCAAGTC-C--------CGCATTCCAATATGAGTTAGGGAAGCCTAAGGGTTCTCT 1786
Query 1818 TTCCAGAAGCATGCATGATGAGTTGGGTACTTCTTCTCAGGACGCTGCAAAAGCTGTTCC 1877
||||||||||| | ||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1787 TTCCAGAAGCACACGTGATGAGTTGGTTACTTCTTCTCGGGACGCTGCAAAAGCTGTTCC 1846
Query 1878 CTATTCTTTTGGAGGGGAAACTGCAAATCTCCCCAAACCACCATCTCACTCACTGGGAAA 1937
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1847 CTATTCTTTTGGAGGCGAAACTGCAAATCTCCCCAAACCACCATCTCACTCACTCGGAAA 1906
Query 1938 TAACAAACCGGTACTTCCATCGATCTCAGTAGCCAAGCCCTTCCAAAAATGGGCAGTCCC 1997
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1907 TAACAAACCGGTACTTCCATCGATCTCAGTAGCCAAGCCCTTCCAAAAATGGGCAGTCCC 1966
Query 1998 TTCGGGTTCAAACGCTGGCTTCACATTCCCGGTCTCTTCATCTGATGGAACAACATCATC 2057
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1967 TTCGGGCTCAAACGCTGGCTTCACATTCCCGGTCTCTTCATCTGATGGAGCAACATCATC 2026
Query 2058 AGAGCCCACAACTCCATCCATCATGCCCTTCACAACAAGCCCACCAGTAGCAAGTGGTGG 2117
|||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||
Sbjct 2027 AGAGCCCACAACTCCATCTATCATGCCCTTCACAACAAGCCCAGCAG---CAAGTGGTGG 2083
Query 2118 TGGTGTTGCCATTACGAATCATCACGAAGCGAGAAAAGATTACGAGATTCCTCAATTTAG 2177
||||||||||||||| |||||||||||||| ||||||||| | |||||||||||||||||
Sbjct 2084 TGGTGTTGCCATTACAAATCATCACGAAGCTAGAAAAGATGAAGAGATTCCTCAATTTAG 2143
Query 2178 TTTCGACGGCAGCAACAGAAGAGGAGATAAGTCGCCCCTGGTGTTTTCGTTTCCCTCTGT 2237
||||||||||| | |||| |||||||||||||||||||||| |||||||||||||| |
Sbjct 2144 TTTCGACGGCA--A-CAGAGGAGGAGATAAGTCGCCCCTGGTCTTTTCGTTTCCCTCAAT 2200
Query 2238 AAGCGAAGAGGTGGTCAGTGAGGATGATGATGCGAGGTTTGGTATCAAATACACATTTGG 2297
|||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 2201 GAGCGAAGAGGTGGTCAATGAAGATGATGATGCGAGGTTAGGTATCAAATACACATTTGG 2260
Query 2298 GTCAGAAAAGCCGGAGAGGATATCATTCAGCTCAGCAGGAAGTGACGGTGTCTGCTGTTA 2357
||||||||| |||||||| ||||| |||||||||||||||||||| ||||| ||||||||
Sbjct 2261 GTCAGAAAATCCGGAGAGAATATCGTTCAGCTCAGCAGGAAGTGATGGTGTTTGCTGTTA 2320
Query 2358 AAAGACAAGGACAACGGTCTTTGTTTCTTGTATGttttccaaaaaaatttccttttttgt 2417
|| ||||||||||||||||| ||| ||||| ||||||||||| | ||||| ||||| ||
Sbjct 2321 AA-GACAAGGACAACGGTCTCTGTCTCTTGCATGTTTTCCAATATAATTT--TTTTT-GT 2376
Query 2418 tttctcgaattgtttttgcttctttacttttgagagtagaattttgTGCCTAGATCAT-G 2476
| |||||||||||||| ||| |||||||| | ||||||||||||||||||||||||| |
Sbjct 2377 TGTCTCGAATTGTTTTA-CTTTTTTACTTTGG-GAGTAGAATTTTGTGCCTAGATCATTG 2434
Query 2477 AGTTTTGATTTCT--ATTCATTTGAG--GATTGATTTCTTTAT-GAATCCGATTTTTATA 2531
|||||||||||| ||||||||||| ||||| ||||||| | || || | ||||||||
Sbjct 2435 -GTTTTGATTTCTCTATTCATTTGAGATGATTGGTTTCTTTTTTGAGTCTGTTTTTTATA 2493
Query 2532 AAAATAAAAGGTTAATC 2548
||||||||| |||||||
Sbjct 2494 AAAATAAAAAGTTAATC 2510
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96063597890
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5