BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G20220.1
Length=1522
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941574 jgi|Araly1|941574|scaffold_602118.1 1814 0.0
> Ahg941574 jgi|Araly1|941574|scaffold_602118.1
Length=1261
Score = 1814 bits (982), Expect = 0.0
Identities = 1148/1226 (94%), Gaps = 19/1226 (2%)
Strand=Plus/Plus
Query 109 GGTTTTGCAGCCACCACAATGGATGAGAAAGAAGAAGACCCGATTTCAGTTCCTTCTCAA 168
|||||||||| ||| ||||| ||||||||||||| |||||||||||||| ||||||||
Sbjct 53 GGTTTTGCAG---CCAGAATGGTTGAGAAAGAAGAACACCCGATTTCAGTTTCTTCTCAA 109
Query 169 TCCCAACTCAAAATTCGTCTTTTTTCCTCGCGCGATttcttcttcttcttcttcttcttc 228
||||||||||||||||| |||||| |||||||||| | ||||||||||||
Sbjct 110 TCCCAACTCAAAATTCGCCTTTTTCCCTCGCGCGA-----------T-TTCTTCTTCTTC 157
Query 229 CGACAACAACAACGATGGTTCAGTTTCATCTTCCAGACAAAACAACCGACAGATGGGTTA 288
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 158 AGACAACAAGGACGATGGTTCAGTTTCATCTTCCAGACAAAACAACCGACAGATTGGTTA 217
Query 289 TGATCCTTCAGAGGAACTCTTTGGTGTTGATTTCAAGCCCAGGTTCATATCTGGTGATTC 348
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 218 TGATCCCTCAGAGGAACTCTTTGGTGTTGATTTCAAGCCCAGGATCATATCTGGTGATTC 277
Query 349 GCGTGAACCAAGGTCATGGTTTGGTCCTAACGGTCAGTACATTCGAGAGCTTCCTTGTCC 408
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 278 GCGTGAACCAAGGTCATGGTTTGGTCCTAACGGTCAGTACATTCGAGAGCTTCCATGTCC 337
Query 409 AACTTGTAGGGGAAGAGGTTATACTTCATGTTCAAATTGCGGAATCGAGAGGTCGCGATT 468
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 338 AACTTGTAGAGGAAGAGGTTATACTTCATGCTCAAATTGCGGAATCGAGAGGTCGCGATT 397
Query 469 AGACTGCCCTCAATGCAAAGGAAAGGGCATAATGACTTGTCTCAGATGTTTGGGGGATTG 528
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 398 GGACTGCCCTCAATGCAAAGGAAAGGGCATAATGACTTGTCTCAGATGTTTGGGGGATTG 457
Query 529 TGTCATATGGGAAGAATCAATCGATGAACGACCTTGGGAGAAAGCTAGATCCAGTTCTCC 588
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 458 TGTCATCTGGGAAGAATCAATCGATGAACGACCTTGGGAGAAAGCTAGATCCAGTTCTCC 517
Query 589 ATTTAGAGTAAAGGAGGATGATGAGGTTGATAATTTAGAGATAAAGTTCAGTAAAAGGCG 648
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 518 ATTTAGAGTAAAGGAGGATGATGAGGTTGATAATTTAGAGATTAAGTTCAGTAAAAGGAG 577
Query 649 AAAATCGAAGCGGATTTATCAGTCACCAACTCCTGAAGTTGGACAAAAGATCAGCCGATC 708
||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||
Sbjct 578 GAAATCGAAGCGGATTTACCAGTCACCGACTCCTGAAGTTGGACAAAAGATCAGCCAATC 637
Query 709 TCTAAAAAGTCTCAATGCCAAAACTGGACTTTTTAGTAAGCGCATGAAGATTATACATCG 768
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 638 TCTAAAAAGTCTCAATGCCAAAACTGGACTTTTTAGTAAACGAATGAAGATTATACATCG 697
Query 769 TGATCCAGTGCTTCATGCTCAAAGAGTAGCTGCAATTAAGAAAGCTAAAGGAACACCAGC 828
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 698 TGATCCTGTGCTTCATGCTCAAAGGGTAGCTGCAATTAAGAAAGCTAAAGGAACACCAGC 757
Query 829 TGCTAGAAAGCATGCATCCGAATCTATGAAAGCTTTCTTCAGTAACCCTGTAAACCGTGA 888
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 758 TGCTAGAAAGCATGCATCCGAATCTATGAAAGCTTTCTTCAGTAACCCTGAAAACCGTGA 817
Query 889 ACAGAGAAGCCTATCTATGAAAGGAACTAAGTTTTACTGCAAGAACTGTGGACAGGAAGG 948
||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||
Sbjct 818 ACAGAGAAGCCTATCCATGAAAGGGGTTAAATTTTACTGCAAGAACTGTGGACAGGAAGG 877
Query 949 CCATAGACGCCATTACTGTCCAGAACTAGGCACTAATGCGGACAGAAAATTTAGATGTCG 1008
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 878 CCATAGACGCCATTACTGTCCAGAACTAAGCACTAATGCGGACAGAAGATTTAGATGTCG 937
Query 1009 GGGTTGCGGCGGGAAAGGCCACAACCGTAGAACTTGTCCTAAGTCGAAATCAATAGTCAC 1068
||||||||| ||||||||||| ||||| ||||||||||||||||| |||||||| |||||
Sbjct 938 GGGTTGCGGTGGGAAAGGCCATAACCGAAGAACTTGTCCTAAGTCAAAATCAATGGTCAC 997
Query 1069 TAAAGGCATTTCCACTAGGTATCACAAATGTGGAATATGCGGTGAGAGAGGTCACAACAG 1128
|||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||
Sbjct 998 GAAAGGCATTTCCACTAGGTATCACCAATGTGGAATATGCGGTGAAAGCGGTCACAACAG 1057
Query 1129 CAGAACATGCCGGAAGCCGACCGGAGTGAATCCTAGTTGCAGTGGTGAAAATTCCGG-GG 1187
||||||||||| |||||||||||||||||| |||||| || ||||| ||||| | ||
Sbjct 1058 CAGAACATGCCTGAAGCCGACCGGAGTGAAACCTAGTGGCCCTGGTGGGGATTCCAGTGG 1117
Query 1188 AAGATGGTGTTGGTAAAATAACGTATGCTTGTGGGTTCTGCAAGAAAATGGGACATAATG 1247
| ||||||| ||||| || || |||||||||| |||||||||||||||||||||||||||
Sbjct 1118 A-GATGGTGGTGGTAGAAGAAGGTATGCTTGTCGGTTCTGCAAGAAAATGGGACATAATG 1176
Query 1248 TAAGAACCTGTCCAAGTAAACAAGTTTCAGACAGTGATTCTTGTTTAGAGCAAGAAGGTT 1307
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1177 TAAGAACCTGTCCAAGTAAACAAGTTTCAGACAGTGATTCTTGTCTAGAGCAAGAAGGTT 1236
Query 1308 CTTGA-ACCTGTTTATTTGGTTAGGC 1332
||||| || |||||||||||||||||
Sbjct 1237 CTTGACAC-TGTTTATTTGGTTAGGC 1261
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56983006520
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5