BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G20230.1
Length=932
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488928 jgi|Araly1|488928|fgenesh2_kg.6__2062__AT5G20230.1 1378 0.0
> Ahg488928 jgi|Araly1|488928|fgenesh2_kg.6__2062__AT5G20230.1
Length=941
Score = 1378 bits (746), Expect = 0.0
Identities = 882/945 (93%), Gaps = 19/945 (2%)
Strand=Plus/Plus
Query 1 GAAACCACAACAAACACAAAAATCAAAAGGGGTCATTTACTATCTTTTAAGAGACGACAT 60
|||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||
Sbjct 1 GAAACCACAACAAACACATAAATCGTAA-GGGTCATTTACTATCTTTTAAGAGACGACAT 59
Query 61 ATATAGTTCTCGACCAAGAAAAGAAAAGGGGGTGACCTGAGTTCTTCAACACATAACA-T 119
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
Sbjct 60 ATATAGTTCTCGACCAAGAAAAGAAAAGGGGGTGACCTGAGTGCTTCAACACATAATAAT 119
Query 120 AATGGCCGGAGTTTTCAAAACGGTTACGTTTCTTGTTTTGGTTTTCGCTGCCGTTGTTGT 179
| ||||||||||||||||||||||||| ||| | ||||||||||||||||| | ||||||
Sbjct 120 A-TGGCCGGAGTTTTCAAAACGGTTACCTTTATGGTTTTGGTTTTCGCTGCAGCTGTTGT 178
Query 180 CTTCGCGGAGGACTACGATGTTGGTGATGATACGGAATGGACGAGACCTATGGACCCCGA 239
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 179 CTTCGCGGAGGACTATGATGTTGGTGATGATACCGAATGGACGAGACCTATGGACCCCGA 238
Query 240 GTTCTATACTACTTGGGCTACCGGTAAAACTTTCCGTGTAGGCGACGAGCTCGAATTTGA 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 GTTCTATACTACTTGGGCTACCGGTAAAACTTTCCGTGTAGGCGACGAGCTCGAATTTGA 298
Query 300 TTTCGCTGCTGGGAGGCATGATGTGGCAGTTGTATCAGAAGCTGCATTTGAAAACTGTGA 359
|||||||||||||||||||||||||||||||||| || ||| ||||||||||||||| ||
Sbjct 299 TTTCGCTGCTGGGAGGCATGATGTGGCAGTTGTAACACAAGATGCATTTGAAAACTGCGA 358
Query 360 GAAAGAGAAACCCATTAGCCACATGACCGTTCCTCCGGTCAAAATTATGCTAAACACCAC 419
||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 359 GAAAGAGAAACCCATCAGCCATATGACGGTTCCTCCGGTCAAAATTATGCTAAACACCAC 418
Query 420 TGGACCACAATACTTTATCTGCACCGTCGGTGACCATTGTCGTTTTGGTCAAAAACTTTC 479
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 419 TGGACCACAATACTTTATCTGCACCGTCGGTGACCATTGCCGTTTTGGTCAAAAACTCTC 478
Query 480 CATCACTGTAGTTGCTGCTGGTGCAACTGGAGGTGCTACTCCTGGTGCCGGTG------C 533
|||||||||||||| ||||||||||| ||||||||||||||| ||||| |||| |
Sbjct 479 CATCACTGTAGTTGGTGCTGGTGCAAGTGGAGGTGCTACTCCAGGTGCTGGTGGTGGTGC 538
Query 534 TACCCCAGCACCTGGATCAACCCCAAGTACTGGAGGAACCACTCCTCCCACTGCGGGTGG 593
||||||||||||||| |||||||||||| |||||||||||||||| |||||||| || ||
Sbjct 539 TACCCCAGCACCTGGGTCAACCCCAAGTGCTGGAGGAACCACTCCCCCCACTGCAGGCGG 598
Query 594 GACCACAACACCTTCAGGCTCTAGCGGAACCACTACTCCAGCTGGAAATGCCGCTTCCTC 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GACCACAACACCTTCAGGCTCTAGCGGAACCACTACTCCAGCTGGAAATGCCGCTTCCTC 658
Query 654 ATTAGGTGGTGCTACTTTTCTGGTCGCTTTTGTTTCTGCTGTTGTTGCTCTCTTTTGAGT 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 ATTAGGTGGTGCTACTTTTCTGGTCGCTTTTGTTTCTGCTGTTGTTGCTCTCTTTTGAGT 718
Query 714 CACACTCGAAACCTAGTTA-TG--TAT-T-T--GTTTTACCTTACTCTCCTTATTTAAAT 766
|||||||||||| |||||| | ||| | | ||||||||||||||||||||||| ||
Sbjct 719 CACACTCGAAACTTAGTTAATCAATATGTGTTTGTTTTACCTTACTCTCCTTATTTCTAT 778
Query 767 AGTCATGTATTTGATTATTTGTGAGAATAAGGACTTGTTTTCAAGTCATTATAAACGTCT 826
|||||||||| ||| | ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 779 AGTCATGTATATGACTCTTTGTGAAAATAAGGACTTGTTTTCAAGTCATTATAAACGTCT 838
Query 827 TATACTTGTGATTAGTATTGAGTTTCAATATATGATTATTCGGTTGCAAAATAAAGAGTG 886
|||||||||||||||||| ||||||| |||||||| ||||||||||||||| ||| ||||
Sbjct 839 TATACTTGTGATTAGTAT-GAGTTTCGATATATGAGTATTCGGTTGCAAAAGAAATAGTG 897
Query 887 GGT-TTCAATATCATTGAGATTACTACTATATATTACCATATTTC 930
| | ||||| |||||| ||||||||||||||||||||||||||||
Sbjct 898 G-TATTCAACATCATTCAGATTACTACTATATATTACCATATTTC 941
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34577485719
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5