BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G20240.1
Length=1095
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488929 jgi|Araly1|488929|fgenesh2_kg.6__2063__AT5G20240.1 1452 0.0
> Ahg488929 jgi|Araly1|488929|fgenesh2_kg.6__2063__AT5G20240.1
Length=1042
Score = 1452 bits (786), Expect = 0.0
Identities = 949/1024 (93%), Gaps = 25/1024 (2%)
Strand=Plus/Plus
Query 22 TTTCTCTCTCTATCTCATCAATGTTACTTTAAAACCAATGCTCCTCTTCTTGTTCTTCAT 81
||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1 TTTCTCTCTCTCTCTCATCAATGTTGCTTTAAAACCAATGCTCCTCTTCATGTTCTTCAT 60
Query 82 ATAAACCACATATCCTCTCCTCCATATCTTAACAATTTCATAGCAAACCCTAAAATTgag 141
|||||||||||||||||||||||| |||||||| |||||||||||||||||| | |||||
Sbjct 61 ATAAACCACATATCCTCTCCTCCACATCTTAACGATTTCATAGCAAACCCTAGATTTGAG 120
Query 142 aaagagatagagagagaaagatgggtagaggaaagatcgagataaagaggatagagaaCG 201
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 121 AAAGAGATAGAGAGAGAAAGATGGGTAGAGGGAAGATCGAGATAAAGAGGATAGAGAACG 180
Query 202 CAAACAACAGAGTGGTGACGTTCTC-AAAGAGGAGGAATGGATTGGTGAAGAAGGCTAAA 260
||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||
Sbjct 181 CAAACAACAGAGTGGTGACGTTCTCGAAA-AGGAGGAATGGGTTGGTGAAGAAGGCTAAA 239
Query 261 GAGATCACAGTTCTTTGTGATGCAAAAGTTGCCCTCATAATCTTTGCAAGTAATGGTAAG 320
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 240 GAGATCACAGTTCTTTGTGATGCAAAAGTTGCTCTCATAATCTTTGCAAGTAATGGTAAG 299
Query 321 ATGATTGATTACTGTTGTCCTTCCATGGATCTTGGTGCTATGTTGGACCAATACCAGAAG 380
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 ATGGTTGATTATTGTTGTCCTTCCATGGATCTTGGTGCTATGTTGGACCAATACCAGAAG 359
Query 381 TTATCTGGCAAGAAACTATGGGATGCTAAGCATGAGAACCTTAGCAATGAGATTGATAGG 440
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 360 TTATCTGGCAAGAAACTATGGGATGCTAAGCATGAGAACCTCAGCAATGAGATTGATAGA 419
Query 441 ATCAAGAAAGAGAATGATAGCTTACAACTGGAGCTCAGGCATTTGAAGGGAGAAGATATA 500
||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 420 ATCAAGAAAGAAAATGATAGCTTACAACTGGAGCTCAGGCACTTGAAGGGGGAAGATATA 479
Query 501 CAGTCTCTCAACTTGAAAAATCTGATGGCTGTCGAGCACGCCATTGAACATGGCCTCGAC 560
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 480 CAGTCTCTCAACTTGAAAAACCTGATGGCTGTCGAGCACGCCATTGAACACGGCCTCGAC 539
Query 561 AAAGTCCGAGACCACCAGATGGAGATCCTTATA-TCAAAGAGGAGAAATGAGAAGATGAT 619
|||||||||||||||||||||||| | || | | |||||||||||||||| |||||||||
Sbjct 540 AAAGTCCGAGACCACCAGATGGAGTTGCTCA-ACTCAAAGAGGAGAAATGTGAAGATGAT 598
Query 620 GGCGGAGGAGCAACGGCAACTCACTTTCCAGCTGCAACAACAGGAGATGGCTATAGCAAG 679
||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 599 TATGGAGGAGCATCGGCAACTCACTTTCCAGCTGCAACAACAGGATATGGCTATAGCAAG 658
Query 680 CAACGCAAGAGGAATGATGATGAGAGATCATGATGGGCAGTTTGGATATAGAGTGCAACC 739
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 659 CAACGCAAGAGGAATGATGATGAGAGATCATGATGGGCAATTTGGATATAGAGTGCAGCC 718
Query 740 GATTCAGCCAAATCTTCAGGAAAAGATTATGTCTTTGGTCATCGATTGATCATCGAGATT 799
||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 719 GATTCAGCCAAATCTTCAGGAAAAGATCATGTCTTTGGTCATCGATTGATCATGGAGATC 778
Query 800 TTATAATCTCATCCTGATCAACTCCTATCTATAATATCGTGGTCTTTAGTTTGTCTTTAT 859
| | ||||||||||| ||||||||||||||| | |||||| ||||||||||||| ||
Sbjct 779 T-AGAATCTCATCCT---CAACTCCTATCTATA-T--CGTGGTATTTAGTTTGTCTT-AT 830
Query 860 CAATCTGTGTGTCTTAATCTCGAGCAACATATATACTCGCTATCAGACTTTTTACTTAAG 919
|||||| |||||||||||||||| |||| ||||||| ||||| ||||||| |||||||
Sbjct 831 GAATCTGCATGTCTTAATCTCGAGCTACATGTATACTCTCTATCCGACTTTT-ACTTAAG 889
Query 920 CTATATGTGTGTTGTTTG----CTTATGACCTCTATGTATTGGTTGTGTTGTGTGCTTAA 975
|||||||||||||||||| ||| |||||| ||||||||||||||||||||| ||||
Sbjct 890 CTATATGTGTGTTGTTTGTTTGCTTCTGACCT--ATGTATTGGTTGTGTTGTGTGTTTAA 947
Query 976 ACGTTTCGAACTAATTG-ATCTGTGTGAAA-----CTTATTATTCTGTGATAAGCTATTT 1029
|||||| |||||| ||| || ||||||||| || ||||||||||| |||||||| |
Sbjct 948 ACGTTTGGAACTATTTGCATGTGTGTGAAATGAAACTAATTATTCTGTGTTAAGCTATAT 1007
Query 1030 GTGA 1033
||||
Sbjct 1008 GTGA 1011
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40791521190
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5