BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G20260.1
Length=1377
Score E
Sequences producing significant alignments: (Bits) Value
Ahg326421 jgi|Araly1|326421|fgenesh1_pm.C_scaffold_6001641 1808 0.0
Ahg325645 jgi|Araly1|325645|fgenesh1_pm.C_scaffold_6000865 91.6 1e-17
> Ahg326421 jgi|Araly1|326421|fgenesh1_pm.C_scaffold_6001641
Length=1965
Score = 1808 bits (979), Expect = 0.0
Identities = 1107/1170 (95%), Gaps = 4/1170 (0%)
Strand=Plus/Plus
Query 208 AAAGGAAATAAGAGGAACATAATTGAGGAAGGTTTAGCAAAATCAAGATCCGCCATACGT 267
|||| ||| ||||| |||| ||| |||||||||||||||||||| ||| | |||||||||
Sbjct 793 AAAGAAAAGAAGAGAAACAGAATCGAGGAAGGTTTAGCAAAATCGAGAGCTGCCATACGT 852
Query 268 GAAGCCGTGAGGTTGAAGAAGTTTGTATCGGACAAAGAAGAAACCTT-TGTTCCTCGAGG 326
|||||||||||| |||||||||||| ||||||||| || |||| ||| ||||||||| ||
Sbjct 853 GAAGCCGTGAGGCTGAAGAAGTTTGCATCGGACAAGGAGGAAA-CTTCTGTTCCTCGTGG 911
Query 327 AGCCGTTTACAGAAACGCTTTTGCATTTCATCAAAGCCATATAGAGATGGAGAAGAAATT 386
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 912 AGCTGTTTACAGAAACGCTTTTGCATTTCATCAAAGCCATATGGAGATGGAGAAGAAATT 971
Query 387 CAAAGTGTGGGTGTACAGAGAAGGAGAGACACCGTTAGTTCACATGGGTCCAATGAACAA 446
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 972 CAAAGTGTGGGTGTACAGAGAAGGAGACACACCGTTAGTTCACATGGGTCCAGTGAACAA 1031
Query 447 CATATACAGCATTGAAGGCCAATTCATGGACGAGATCGAGACAGGGATGAGCCCGTTCGC 506
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1032 CATATACAGCATTGAAGGCCAATTCATGGACGAGATCGAGACAGGGATGAGCCCATTCGC 1091
Query 507 GGCTAACAACCCCGAAGAGGCTCATGCCTTTCTCCTCCCTGTCAGCGTCGCCAACATCGT 566
|||| | |||||| |||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1092 TGCTAGCGGCCCCGAGGAGGCTCATGCCTTTCTCCTCCCTGTCAGCATCGCCAACGTCGT 1151
Query 567 TCATTACCTATACCGGCCGCTCGTGACCTACTCGAGGGAACAACTTCACAAAGTTTTTCT 626
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1152 TCATTACTTATACAGGCCGCTCGTGACCTACTCGAGGGAACAACTTCACAAAGTTTTTCT 1211
Query 627 TGACTACGTCGATGTTGTGGCTCACAAGTATCCTTATTGGAACAGAAGCCTTGGAGCCGA 686
|||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 1212 TGACTACGTCAATGTTGTGGCTCACAAATATCCTTATTGGAACCGAAGCCTTGGAGCCGA 1271
Query 687 CCATTTCTACGTTTCTTGCCATGATTGGGCACCAGACGTCTCAGGATCGAACCCGGAGCT 746
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 1272 CCATTTCTTTGTTTCTTGCCATGATTGGGCACCAGACGTCTCAGGATCTAACCCGGAGAT 1331
Query 747 GATGAAAAACCTGATAAGAGTTCTCTGCAACGCCAACACATCAGAAGGTTTCATGCCCCA 806
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1332 GATGAAAAACCTGATAAGAGTTCTCTGCAACGCCAACACATCGGAAGGTTTCATGCCCCA 1391
Query 807 ACGAGACGTCTCAATCCCGGAGATCAACATCCCCGGAGGCCACCTGGGACCACCTCGGTT 866
|||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||| ||
Sbjct 1392 ACGAGATGTCTCAATCCCGGAGATCAACATCCCCAGAGGCCAACTGGGACCACCTCAATT 1451
Query 867 ATCGCGCTCTTCGGGCCATGACCGACCCATCCTTGCTTTCTTCGCAGGGGGTTCACACGG 926
||| |||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 1452 ATCCCGCTCTTCTGGCCATGACCGACCCATCCTTGCTTTCTTCTCAGGGGGCTCACACGG 1511
Query 927 TTATATCCGCAGAATTCTATTGCAGCATTGGAAAGACAAAGATGAGGAGGTCCAAGTCCA 986
||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 1512 TTATATCCGCAAAATTCTACTGCAGCACTGGAAAGACAAAGATGAGGAGGTCCAAGTCCA 1571
Query 987 CGAGTACTTAGCCAAAAACAAAGACTACTTCAAGCTCATGGCTACGGCAAGGTTCTGTCT 1046
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1572 CGAGTACTTAACCAACAACAAAGACTACTTCAAGCTCATGGCTACGGCAAGGTTCTGTCT 1631
Query 1047 CTGTCCTAGTGGCTACGAAGTGGCTAGCCCTCGAGTCGTTGCAGCCATTAACTTAGGTTG 1106
|||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1632 CTGTCCCAGTGGCTATGAAGTGGCTAGCCCTCGAGTCGTTGCAGCCATTAACCTAGGTTG 1691
Query 1107 CGTCCCTGTCATCATCTCTGATCACTACGCCTTGCCTTTCTCAGACGTTCTTGATTGGAC 1166
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1692 CGTCCCTGTCATCATCTCTGATCACTACGCCTTGCCCTTCTCAGACGTTCTTGATTGGAC 1751
Query 1167 TAAGTTCACCATTCATGTTCCTTCT-AAGAAGATCCCTGAGATCAAAACCATACTAAAGA 1225
||||||||||||||||||||| ||| || |||||||||||||||||||| ||||||||||
Sbjct 1752 TAAGTTCACCATTCATGTTCCCTCTGAA-AAGATCCCTGAGATCAAAACTATACTAAAGA 1810
Query 1226 GCATATCCTGGAGACGCTACAGGGTGTTGCAGAGAAGGGTTTTGCAGGTCCAGAGACATT 1285
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1811 GCATATCCTGGAGACGCTACAAGGTGTTGCAGAGAAGGGTTTTGCAGGTCCAGAGACATT 1870
Query 1286 TCGTGATCAACAGACCGTCACAACCGTTTGATATGCTTAGAATGCTTCTTCACTCTGTTT 1345
| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 1871 TTGTGATCAACAGACCGTCGCAACCGTTTGATATGCTTCGAATGCTTCTTCACTCTGTTT 1930
Query 1346 GGTTGAGAAGACTAAACCTGAGGTTGCCTT 1375
||||||||||||||||||||||||||||||
Sbjct 1931 GGTTGAGAAGACTAAACCTGAGGTTGCCTT 1960
> Ahg325645 jgi|Araly1|325645|fgenesh1_pm.C_scaffold_6000865
Length=1011
Score = 91.6 bits (49), Expect = 1e-17
Identities = 98/120 (82%), Gaps = 10/120 (8%)
Strand=Plus/Plus
Query 373 ATGGAGAAGAAATTCAAAG-TGTGGGTGTACAGAGAAGGAG-AGACACCGT-TAG-TTCA 428
|||||||||| |||| ||| | ||| || |||||||||| || | || | | | ||||
Sbjct 1 ATGGAGAAGAGATTC-AAGATATGGACATATAGAGAAGGAGAAG-CTCC-TCT-GTTTCA 56
Query 429 CATGGGTCCAATGAACAACATATACAGC-ATTGAAGGCCAATTCATGGACGAGATCGAGA 487
|| |||||| | |||||||| ||| || |||||||||||||||||||||||||||||||
Sbjct 57 CAAAGGTCCACTCAACAACATTTAC-GCTATTGAAGGCCAATTCATGGACGAGATCGAGA 115
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51542183784
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5