BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G20290.1
Length=966
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941581 jgi|Araly1|941581|scaffold_602125.1 1146 0.0
> Ahg941581 jgi|Araly1|941581|scaffold_602125.1
Length=777
Score = 1146 bits (620), Expect = 0.0
Identities = 746/802 (93%), Gaps = 27/802 (3%)
Strand=Plus/Plus
Query 19 AGCTAAACTTTATTGGAGAAACCCTAATCGGCGACAATGGGTATTTCTCGTGACTCTATC 78
|||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 AGCTTAACTTTGTTGGAGAAACCCTAATCGGCGACAATGGGTATTTCTCGTGACTCCATC 60
Query 79 CACAAGAGGCGTGCCACTGGAGGCAAGCAGAAGCAATGGAGGAAGAAGCGAAAGTATGAG 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CACAAGAGGCGTGCCACTGGAGGCAAGCAGAAGCAATGGAGGAAGAAGCGAAAGTATGAG 120
Query 139 ATGGGAAGGCAGCCAGCCAACACCAAGCTCTCAAGCAACAAGACGGTCAGAAGAATAAGA 198
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 121 ATGGGAAGGCAGCCAGCCAACACCAAGCTCTCAAGCAACAAGACGGTCAGAAGAATCAGA 180
Query 199 GTTCGTGGTGGAAATGTTAAGTGGCGTGCGTTGAGGCTCGATACTGGTAACTACTCGTGG 258
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 181 GTTCGTGGTGGAAATGTTAAGTGGCGTGCGTTGAGGCTCGATACTGGTAACTACTCTTGG 240
Query 259 GGAAGTGAAGCAACTACCCGCAAGACCAGAGTCCTTGATGTGGTCTACAATGCCTCCAAC 318
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 241 GGAAGTGAAGCTGTTACCCGCAAGACCAGAGTCCTTGATGTCGTCTACAATGCCTCCAAC 300
Query 319 AATGAGCTTGTACGTACTAAGACACTTGTCAAGAGTGCTATTGTTCAGGTTGATGCTGCT 378
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 301 AATGAGCTTGTCCGTACTAAGACACTTGTCAAGAGTGCTATTGTTCATGTTGATGCAGCT 360
Query 379 CCGTTCAAGCAGTGGTACCTCTCGCACTATGGTGTTGAGCTTGGGCGCAAGAAGAAGAGT 438
|| |||||||||||||| ||||||||||||||||||||| |||| ||||||||||||| |
Sbjct 361 CCTTTCAAGCAGTGGTATCTCTCGCACTATGGTGTTGAGGTTGGCCGCAAGAAGAAGAAT 420
Query 439 GCTTCTTCCACCAAGAAGGACGGAGAGGAAGGTGAAGAGGCAGCTGTTGCAGCTCCTGAG 498
||| |||||| ||||||||||| ||||||||||||||||| ||| | | | | ||||
Sbjct 421 GCTCCTTCCAACAAGAAGGACGCAGAGGAAGGTGAAGAGGTAGCAGCT--A--T--TGAG 474
Query 499 GAGGTCAAGAAGAGCAACCACCTC-CTGAGAAAGATTGCA-AGCCGTCAAGAGGGTCGCA 556
||| ||||||||||||||||||| || |||||||||| | |||||||||||||||||||
Sbjct 475 GAGACCAAGAAGAGCAACCACCTCTCT-AGAAAGATTG-AGAGCCGTCAAGAGGGTCGCA 532
Query 557 GTCTTGATTCACACATTGAGGACCAATTTGCAAGTGGACGTTTGTTGGCTTGTATCTCTT 616
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 533 GTCTTGATTCACACATTGAGGACCAATTCGCAAGTGGACGTTTGTTGGCTTGTATCTCTT 592
Query 617 CAAGGCCTGGCCAGTGCGGGCGTGCTGATGGATACATCTTGGAAGGTAAAGAGTTGGAGT 676
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CAAGGCCTGGCCAGTGCGGACGTGCTGATGGATACATCTTGGAAGGTAAAGAGTTGGAGT 652
Query 677 TCTACATGAAGAAGATCCAGAAGAAGAAGGGCAAGGGTGCTGCTTAGAGTCTCTTCTTAT 736
|||||||||||||||||||||||||||||||||||||||| ||||||| | ||| |||
Sbjct 653 TCTACATGAAGAAGATCCAGAAGAAGAAGGGCAAGGGTGCCGCTTAGA-T-TCT-CTT-- 707
Query 737 CTGCCTTGAGCTTTTGTCTTACAACATGTTTTGAGTTTTCAGTTTCAATTGTCTGAGAAA 796
|| | | | |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 708 CT---T-G---T-----CTTACAACATGTTTTGAGTTTTCAGTTTCAGTTGTCTGAGAAA 755
Query 797 CTATGTTTTTGGATTAGCTTGT 818
||||||||||||||||||||||
Sbjct 756 CTATGTTTTTGGATTAGCTTGT 777
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35873664897
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5