BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G20300.1
Length=2564
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941582 jgi|Araly1|941582|scaffold_602126.1 3818 0.0
> Ahg941582 jgi|Araly1|941582|scaffold_602126.1
Length=2404
Score = 3818 bits (2067), Expect = 0.0
Identities = 2281/2385 (96%), Gaps = 11/2385 (0%)
Strand=Plus/Plus
Query 64 AATGAAAGGCTTCAAAGACTGGGTTTTCGCTCTATCCAACTCAATGGCATCATCTAGACC 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 20 AATGAAAGGCTTCAAAGACTGGGTTTTCGCTCTATCCAACTCAATGGCATCATCTAGACC 79
Query 124 ACTTTTGGGAAGTGACCCTTTTTTCCGTGACCCTCATCAAGAACAAGATAACCACTCTCA 183
|||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||
Sbjct 80 ACTTTTGGGAAGTGACCCTTTTTTCCGTGA--CTC-TCAAGAACAAGATAACCTGTCTCA 136
Query 184 AGCACCTGCCGCACCACAACCAGTGAC-ACTCTCGGAACCACCATGTTCAACCAGTAGTG 242
|| |||||| |||||| |||||||||| | | | |||| ||||||||||||||||| |||
Sbjct 137 AGTACCTGCTGCACCAGAACCAGTGACAAGT-TTGGAAGCACCATGTTCAACCAGTGGTG 195
Query 243 ATTTAGAAATTCTGCCTCCTCTCTCTCAGCAACAAGTTCCACTTGAAAGCTTGTACCAGT 302
|| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 196 ATGTAGAAATTCAGCCTCCTCTCTCTCAGCAACAAGTTCCACTCGAAAGCTTGTACCAGT 255
Query 303 CAAGTATTGATCTTAACGGAAAGAAACATAATCCACTAGCAAAGATTGGTGGCCTTCAAG 362
|||||||||||||||| |||| ||||| ||||||||||||||||||||||| ||| ||||
Sbjct 256 CAAGTATTGATCTTAATGGAATGAAACCTAATCCACTAGCAAAGATTGGTGACCTCCAAG 315
Query 363 TGCAGTTCTTACGCCTTGTTCAAAGGTTTGGGCAGTCACAGAATAATATTCTAGTCTCCA 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 TGCAGTTCTTACGCCTTGTTCAAAGGTTTGGGCAGTCACAGAATAATATTCTAGTCTCCA 375
Query 423 AGGTTTTGTATCGGGTACATCTTGCGATGCTGATACGAGCTGAGGAATCAGAACTTAAGA 482
||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||| |
Sbjct 376 AGGTTTTATATCGGGTACACCTTGCGATGATGATACGAGCTGAGGAATCAGAACTTAA-A 434
Query 483 A-TGTAAAACTTAGGCAAGATAGGGCCAAAGCTTTAGCAAGGGAGCAAGAATCATCTGGC 541
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 435 ACTGTAAAACTTAGGCAAGATAGGGCCAAAGCTTTAGCAAGGGAGCAAGAATTATCTGGC 494
Query 542 ATACCGGAGCTTGATTTCTCACTTAGAATCCTTGTCCTGGGGAAAACAGGTGTCGGCAAG 601
||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 495 ATACCGGAGCTGGATTTCTCACTTAGAATCCTTATCCTGGGGAAAACAGGTGTTGGCAAG 554
Query 602 AGTGCAACCATAAACTCTATTTTTGGTCAGCCCAAAAGTGAGACTGATGCTTTCCGACCG 661
|||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||
Sbjct 555 AGTGCAACCATAAACTCTATTTTTGGTCAGTCCAAAAGTGAAACCGATGCTTTCCGACCG 614
Query 662 GGCACAGATCGCATAGAAGAGGTTATGGGAACTGTCAGTGGAGTTAAAGTTACCTTTATT 721
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 615 GCCACAGATCGCATAGAAGAGGTTATGGGAACTGTCAGTGGAGTTAAAGTAACCTTTATT 674
Query 722 GATACCCCTGGTTTTCACCCACTGTCATCTTCTAGCACAAGAAAAAACCGAAAGATTCTC 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 675 GATACCCCTGGTTTTCACCCACTGTCATCTTCTAGCACAAGAAAAAACCGAAAGATTCTC 734
Query 782 CTATCTATTAAGAGATATGTTAAGAAGCGTCCACCTGATGTAGTTCTTTACTTGGACCGC 841
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 735 CTCTCTATTAAGAGATACGTTAAGAAGCGTCCACCTGATGTAGTTCTTTACTTGGACCGC 794
Query 842 CTTGATATGATCGACATGCGATACAGTGATTTCTCCCTCCTGCAGCTTATAACTGAAATC 901
|||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||
Sbjct 795 CTTGATATGATCGACATGCGATACAGTGATTTTTCCCTCTTGCAGCTTATAAGTGAAATC 854
Query 902 TTTGGTGCAGCTATATGGTTAAACACGATACTTGTAATGACGCATTCCGCAGCTACTACA 961
||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||
Sbjct 855 TTTGGTGCAGCTATATGGTTAAACACGATTCTTGTAATGACGCATTCCTCAACTACTACA 914
Query 962 GAAGGACGTAATGGACAATCTGTGAACTATGAGTCATATGTGGGCCAGCGCATGGATGTG 1021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 915 GAAGGACGTAATGGACAATCTGTGAACTATGAGTCATATGTGGGCCAGCGCATGGATGTG 974
Query 1022 GTTCAACATTATATACATCAGGCTGTGTCTGATACAAAACTAGAAAACCCTGTTCTGTTA 1081
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 975 GTTCAGCATTATATACATCAGGCTGTGTCTGATACAAAACTAGAAAACCCTGTGCTGTTA 1034
Query 1082 GTTGAAAATCATCCCAGCTGTAAAAAGAATCTTGCTGGTGAGTATGTTCTTCCAAATGGG 1141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1035 GTTGAAAATCATCCCAGCTGTAAAAAGAATCTTGCTGGTGAGTATGTTCTTCCAAATGGG 1094
Query 1142 GTGGTATGGAAGCCTCAGTTTATGTTTCTGTGCGTTTGTACCAAAGTTCTTGGCGATGTC 1201
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1095 TTGGTATGGAAGCCTCAGTTTATGTTTTTGTGCGTTTGTACCAAAGTTCTTGGCGATGTC 1154
Query 1202 CAGTCTTTACTGAGATTTCGTGACAGCATTGGCCTGGGTCAGCCAAGTAGTACCCGAACA 1261
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1155 CAGTCTTTACTGAAATTTCGTGACAGCATTGGCCTGGGACAGCCAAGTAGTACCCGAACA 1214
Query 1262 GCTTCCCTTCCTCATCTTCTTTCAGTTTTTCTGCGCCGTCGCTTATCATCAGGTGCAGAT 1321
||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1215 GCTTCTCTTCCTCATCTTCTTTCAGTTTTTCTGCGCCGTCGCTTATCAGCTGGTGCAGAT 1274
Query 1322 GAAACAGAGAAAGAGATAGATAAGCTTCTGAATTTGGATTTAGAGGAGGAAGATGAGTAT 1381
||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1275 GAAGCAGAGAAAGAGATAGACGAGCTTCTGAATTTGGATTTAGAGGAGGAAGATGAGTAT 1334
Query 1382 GACCAGTTGCCTACAATCCGTATCCTTGGGAAATCCCGGTTTGAGAAGCTGTCAAAGTCT 1441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1335 GACCAGTTGCCTACAATCCGTATCCTTGGGAAATCCCGGTTTGAGAAGCTGTCAAAGTCT 1394
Query 1442 CAGAAGAAGGAGTATCTCGATGAGCTTGATTACAGGGAAACCCTTTATCTGAAGAAACAA 1501
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1395 CAGAAGAAAGAGTATCTCGATGAGCTTGATTACAGGGAAACCCTTTATCTGAAGAAACAA 1454
Query 1502 TTGAAGGAAGAATGCCGAAGACGACGGGATGAAAAGCTAGTTGAAGAGGAAAATCTCGAG 1561
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1455 TTGAAGGAAGAATGCCGAAGACGACGGGATGAAAAGCTAATTGAAGAGGAAAATCTCAAT 1514
Query 1562 GACACTGAACAGCGTGATCAAGCAGCTGTTCCACTGCCTGACATGGCAGGTCCAGACAGT 1621
|||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1515 GACACTGAACAGAGCGAGCAAGCAGCTGTTCCACTGCCTGACATGGCAGGTCCAGACAGT 1574
Query 1622 TTTGATTCGGATTTTCCGGCTCACAGATATCGATGCGTAT-CGGCAGGTGACCAGTGGCT 1680
|| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 1575 TTCGATTCGGATTTTCCGGCTCACAGATATCGATGCGT-TGCGGCAGGTGACCAGTGGCT 1633
Query 1681 CGTGAGACCTGTCTATGACCCACAAGGTTGGGATCGCGATGTGGGATTTGATGGAATAAA 1740
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1634 CGTGAGACCTGTCTATGATCCACAAGGTTGGGATCGCGATGTGGGATTTGATGGAATAAA 1693
Query 1741 TATTGAGACGGCTGCAAAAATAAATAGGAATCTATTCGCTTCAGCTACAGGACAGGTGAG 1800
||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1694 TATTGAGACAGCTGCAAAAATAAAAAGGAATCTATTTGCTTCAGCTACAGGACAGGTGAG 1753
Query 1801 CAGAGACAAGCAACGCTTCACTATCCAATCTGAGACTAATGCAGCTTATACTAGAAACTT 1860
||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1754 CAGAGACAAGCAACGTTTCACTATCCAATCCGAGACTAATGCAGCATATACTAGAAACTT 1813
Query 1861 TAGAGAACAGACATTCTCTGTAGCTGTTGACCTTCAATCATCAGGAGAAGATCTGGTGTA 1920
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1814 TAGAGAACAGACGTTCGCTGTAGCTGTTGACCTTCAATCATCAGGAGAAGATCTGGTGTA 1873
Query 1921 CTCGTTTCAGGGCGGCACAAAGCTTCAAACATTTAAGCACAACACAACTGATGTTGGAGT 1980
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1874 CTCGTTTCAGGGCGGCACAAAGCTTCAAACATTTAAGCACAACACAACTGATCTTGGAGT 1933
Query 1981 TGGTTTGACATCTTTTGGTGGGAAATACTATGTGGGCGGAAAGCTTGAGGATACCTTATT 2040
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1934 TGGGGTGACATCTTTTGGTGGGAAATACTATGTGGGCGGAAAGCTTGAGGATACCTTATT 1993
Query 2041 GGTTGGGAAGAGGGTGAAGTTAACTGCGAATGCAGGTCAGATGAGGGGTTCAGGGCAAAC 2100
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1994 GGTTGGGAAGAGGGTGAAGTTAACTGTGAATGCAGGTCAGATGAGGGGTTCAGGGCAAAC 2053
Query 2101 AGCAAACGGCGGGAGCTTTGAAGCTTGTATCAGAGGGAGAGATTACCCGGTCAGAAATGA 2160
|||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2054 AGCACATGGTGGGAGCTTTGAAGCTTGTATCAGAGGGAGAGATTACCCGGTCAGAAATGA 2113
Query 2161 GCAAATCGGTTTGACAATGACGGCTCTGTCTTTCAAGCGAGAACTGGTCTTGAACTATGG 2220
||||||| ||||||||| ||| |||||||| ||||| ||||| |||||||||||||||||
Sbjct 2114 GCAAATCAGTTTGACAACGACTGCTCTGTCATTCAACCGAGAGCTGGTCTTGAACTATGG 2173
Query 2221 TTTACAGACTCAGTTTAGACCAGCCCGGGGCACGAACATAGACGTCAACATAAACATGAA 2280
||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 2174 TTTACAGACTCAGCTTAGACCAGCACGGGGCACGAACATAGACGTCAGCATAAACATGAA 2233
Query 2281 CAATAGGAAAATGGGGAAGATAAATGTGAAACTTAACAGCTCTGAGCACTGGGAGATTGC 2340
||| |||||||||||||||||||| |||||||| |||||| |||||||||||||||| ||
Sbjct 2234 CAACAGGAAAATGGGGAAGATAAACGTGAAACTCAACAGCGCTGAGCACTGGGAGATCGC 2293
Query 2341 TTTGATATCAGCGTTAACGATGTTCAAGGCTTTAGTACGGCGGAGTAAGACTGAAATGAC 2400
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 2294 TTTGATATCAGCGTTAACGATGTTCAAGGCTTTAGTACGGCGGAGGAAGAGTGAAATGAC 2353
Query 2401 TGAGGAAAATGAAGAAGAAAAGATTGTGAATTTTCT-CGTTTCCT 2444
||||||||||||||||| || |||||| |||||| ||||||||
Sbjct 2354 AAAGGAAAATGAAGAAGAAGAG-TTGTGACTTTTCTTCGTTTCCT 2397
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96673041810
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5