BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G20310.1
Length=1329
Score E
Sequences producing significant alignments: (Bits) Value
Ahg893963 jgi|Araly1|893963|Al_scaffold_0006_1959 1707 0.0
> Ahg893963 jgi|Araly1|893963|Al_scaffold_0006_1959
Length=1191
Score = 1707 bits (924), Expect = 0.0
Identities = 1105/1190 (93%), Gaps = 22/1190 (2%)
Strand=Plus/Plus
Query 4 GAGAGAAATGAAGTAAGGGAAGGGCCTATAGCTATTGCAATTGACAGAGATAAAACAACA 63
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 16 GAGAGAAATGAAGTAAGGGAAGGGCCTATAGCTATTGCAATTGATAGAGATAAAACAACA 75
Query 64 AGCTGCCAAGCTCTTAAATGGGCTGTCGATCATTATATACCTCGAGGCGGGACTGTAAAA 123
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 76 AGCTGCCAAGCTCTTAAATGGGCTGTCGATCATTATATACCCCGAGGCGGGACTGTCAAA 135
Query 124 CTCGTTCATGTCATCCAAAGATCTGCTTTGAATATTTCTAATGGATC-T-C-ACACAGAT 180
||||| |||||| ||||||||||||||||||||| | | |||||||| | | ||||||||
Sbjct 136 CTCGTGCATGTCGTCCAAAGATCTGCTTTGAATAATGCAAATGGATCTTACAACACAGAT 195
Query 181 GATGAATCATCTGAAAGA-CAAAGCAATGATAAACGGACGACCGCTCAGTTTCTTCCATT 239
|||||||||||||| ||| || | |||||||||||||| | | ||| ||||||||||||
Sbjct 196 GATGAATCATCTGATAGACCACA-CAATGATAAACGGA-G--CACTCTGTTTCTTCCATT 251
Query 240 GCGCTGTCTTTGTATGCGAAGAAATATACAAAGCGAAATAGTTTTGCTGGAAGATCAAGA 299
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 252 GCGTTGTCTTTGTATGCGAAGAAATATACAAAGCGAAGTAGTTTTGCTGGAAGATCAAGA 311
Query 300 TGTAGCGAAAGCCTTGATCGAATATATTAGCCAGAATTGTATTTCCACATTCATT-CTAG 358
||| || |||||| |||| ||||||||||||||||||||||||||||||||| || ||||
Sbjct 312 TGTGGCAAAAGCCCTGATTGAATATATTAGCCAGAATTGTATTTCCACATTC-TTACTAG 370
Query 359 GTGCCTCGTTGAAGAAGAGCATTACCAGGCTGTTCAAGGCTGATGACATTCCAAGTAATG 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GTGCCTCGTTGAAGAAGAGCATTACCAGGCTGTTCAAGGCTGATGACATTCCAAGTAATG 430
Query 419 TGATGAGATGGGCTCCAGACTTCTGCACTGTATTAGTTTTATCAAAGGGAAGACTTTCAA 478
||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||
Sbjct 431 TGATGAGATGGGCTCCAGACTTCTGCAGTGTATTAGTCATATCAAAGGGAAGACTATCAA 490
Query 479 GTGTACGGGCAGCCACTCGGCCTTTACCTCAAGTCTTGCCATCTTCTTCTTCAGGGACTG 538
||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 491 GTGTACGATCAGCCACTCGGCCTTTACCTCAAGCCTTGCCATCTTCTTCTTCAGGGACTG 550
Query 539 CACCTTTGTCACCACGCAGCAACGGCGATGAGGCTCCCTCTGAGATGTCATTGTCAAGAG 598
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 551 CACCATTGTCACCACGCAGCAACGCCGATGAGGCTCCCTCTGAGATGTCATTGTCAAGAG 610
Query 599 AAGACGACGTTTTCCTTGAAGAGTTTTCATCCGTTGACTCAGATTCTAGTGTGAACATTA 658
| |||||||||||| |||| ||||||| |||| ||||| |||||||||||||||||||||
Sbjct 611 AGGACGACGTTTTCTTTGAGGAGTTTTTATCCCTTGACCCAGATTCTAGTGTGAACATTA 670
Query 659 GTAACAGGTTCAGTACAGACAGTTCGGTTCTCGCCTTCTATGAGAAACTTGCAGCTCCAC 718
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 671 GTAGCAGGTTCAGTACAGACAGTTCGGTTCTCTCCTTCTATGAGAAACTTGCAGCTCCAC 730
Query 719 CCATGTTGGAGATTCCTAGATTCTCTGTTCTTGATGATGAGAAAGCCAAGTTTTCCATCT 778
||||||||| |||||||||||||||| ||| |||||||| ||||||| |||||| ||||
Sbjct 731 ACATGTTGGATATTCCTAGATTCTCTGGTCTGGATGATGAAAAAGCCAGGTTTTCTATCT 790
Query 779 ATCTTAATAGTCTTTCTGATGAAAAGAATTGTACATTAGCTTCCCCATTATCACCAGTCG 838
|||||||||||| ||||||||||||||||||||| |||||||||||| |||||||| ||
Sbjct 791 ATCTTAATAGTCCTTCTGATGAAAAGAATTGTACCTTAGCTTCCCCACTATCACCAA-CG 849
Query 839 -ATGACGCT-ACGGCTGAGATGAGAAGGCTGAAGAAAGAGCTCAAGGAAACGATGAACAT 896
||||||| | |||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 850 GATGACGCCGA-GGCTGAGATGAGGAGGCTGAAGAAAGAGCTGAAGGAAACGATGAACAT 908
Query 897 GTACCACGCCGCTTGCAAAGAAGCTCTTATGGAAAAAGAAAGAGCAGTAGAGCTTGTGAT 956
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 909 GTACCACGCCGCTTGCAAAGAAGCTCTTATGGAAAAAGAAAGAGCGGTAGAGCTTGAGAT 968
Query 957 GTGGAAAAAGAAAGCAGAACTAAGGATTCAAATGGCTGAAGAAACAGCAAGAATGGCTAT 1016
|||||||| ||||||||| ||||||||||||||||||||||| ||| ||| |||||| |
Sbjct 969 GTGGAAAAGGAAAGCAGAGCTAAGGATTCAAATGGCTGAAGATACAACAACAATGGC-A- 1026
Query 1017 CATGGAGATGAAGGCGGTGAAAGGGAAAGGGAGTGATGACAGAAAGATGGTATGGGATAC 1076
| |||||||| ||||||||||||||| |||||||||| |||||||||| ||||||||
Sbjct 1027 ---G-AGATGAAGTCGGTGAAAGGGAAAGAGAGTGATGACGGAAAGATGGTTTGGGATAC 1082
Query 1077 TCTTGGAGAGTCTCATACT-GTGGTTAAACATGAGAGCTTGCTCCATATTTTAGTTGTGC 1135
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
Sbjct 1083 TCTTGGAGAGTCTCAT-CTTGTGGTTAAACATGAGAGCTTGCTCCATATTTTAGTTGTAC 1141
Query 1136 TTTTCTTGTTTTATATTTATTTCACACTAAGAAAACTCTATTTCATGTGA 1185
||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1142 TTTTCTTGTTTTATATTTATTTCACACTAAGAAAATTCTATTTCTTGTGA 1191
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49712283768
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5