BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G20330.1
Length=1552
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488942 jgi|Araly1|488942|fgenesh2_kg.6__2076__AT5G20330.1 1572 0.0
Ahg941587 jgi|Araly1|941587|scaffold_602131.1 1280 0.0
Ahg913138 jgi|Araly1|913138|Al_scaffold_0001_3392 1003 0.0
> Ahg488942 jgi|Araly1|488942|fgenesh2_kg.6__2076__AT5G20330.1
Length=1104
Score = 1572 bits (851), Expect = 0.0
Identities = 1025/1109 (92%), Gaps = 12/1109 (1%)
Strand=Plus/Plus
Query 1 aaaaaaaCAAATTTGGTTCCTTTTTCTTCTTCAGACGAGTAATATC-TTTT-G-TCTTCA 57
|||||||||||||||||||||||||||||||||||| ||||| ||| |||| | | ||||
Sbjct 1 AAAAAAACAAATTTGGTTCCTTTTTCTTCTTCAGACAAGTAAAATCTTTTTAGAT-TTCA 59
Query 58 TCATGCTCTATTCACCTAAGAAGCTGTTCTTGTTCTTCCTCTCGTGCATTGTGCTG-TAT 116
|||||||||||| ||||||||||||||||||| |||||||||||||||||| || | |
Sbjct 60 TCATGCTCTATTTACCTAAGAAGCTGTTCTTG---TTCCTCTCGTGCATTGTGATGTTGT 116
Query 117 --GTCAACTCCAACAACAGTGGCTTCGTAACCGCAGCAAATAGCATCGGCTTGAACTACG 174
||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 117 CAGTCAACTACAACAACAGTGCCTCCGTAACCGCAGCAAATAGCATCGGCTTGAACTACG 176
Query 175 GACTCCTCGGTGACAACCTCCCGTCTCCTTCCAATGTTATCAACCTTTACAAGTCCATAG 234
| |||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 177 GCCTCCTCGGAGACAACCTCCCCTCTCCGTCCAATGTTATCAACCTTTACAAGTCCATAG 236
Query 235 GCATTAGTAGAATCCGAATCTTCGACCCGAACACTGAGGTACTCAATGCCTTACGTGGTC 294
|||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 237 GCATTACTAAAATCCGAATCTTCGACCCGAACACTGAGGTTCTCAATGCCTTACGTGGTC 296
Query 295 ACCGCGATATTGAAGTCACTGTTGGCGTTAAGGACCAAGACTTGGCTGCTCTTGCTGCAA 354
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 297 ACCGCGATATAGAAGTCACTGTTGGCGTTAAAGACCAAGACTTGGCTGCTCTTGCAGCAA 356
Query 355 GCGAAGAAGCTGTTAAGGGCTGGTTCGCGGCCAACATCGAGTCTTACTTAGCTGACGTCA 414
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 357 GCGAAGAGGCTGTTAAGGGCTGGTTTGCGGCCAACATCGAGTCTTACTTAGCTGACGTCA 416
Query 415 ACATCACATTTATTACCGTTGGTAACGAAGTCATCCCCGGACCAATCGGTCCTCAAGTGC 474
||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 417 ACATCGCATTTATTACCATTGGTAACGAAGTCATCCCAGGACCAATCGGTCCTCAAGTGC 476
Query 475 TTCCCGTCATGCAGTCTCTAACCAACCTAGTCAAGTCGAGGAATCTTCCGATCTCGATAA 534
|||| |||||||||||||| |||||||| ||||||||||| |||||||| |||| |||||
Sbjct 477 TTCCGGTCATGCAGTCTCTCACCAACCTCGTCAAGTCGAGAAATCTTCCTATCTTGATAA 536
Query 535 GCACCGTGGTGGCTATGTCGAACCTGGAGCAGTCGTATCCACCTTCCGCGGGAATGTTCA 594
|||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 537 GCACCGTGGTAGCTATGTCGAACCTCGAGCAGTCGTACCCACCTTCCGCGGGAATGTTCA 596
Query 595 CCTCCCAGGCGCGGGAACAACTTGTCCCCGTGTTGAAACTATTGTCTCAAACAAGCACAC 654
|||||||||| |||||||||||||||||||| ||||||||||||| |||||||| ||||
Sbjct 597 CCTCCCAGGCTCGGGAACAACTTGTCCCCGTACTGAAACTATTGTCACAAACAAGTACAC 656
Query 655 CAATCCTTGTCAACATATACCCTTACTTCGCTTATGCGTCCGACCCAGCCAACATCCGTC 714
| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||
Sbjct 657 CGATCCTTGTCAACATATACCCTTACTTCCCTTATGCGTCCGACCCAGTTAACATCCCTC 716
Query 715 TCGACTATGCCAGCTTTAACACTAAGTCCATCGTGGTCCAAGATGGATCATTGGGCTATT 774
|| ||||||||| ||| |||||| || |||| |||||||||||||| ||||||| ||||
Sbjct 717 TCAACTATGCCACCTTCAACACTGAGGCCATATTGGTCCAAGATGGACCATTGGGTTATT 776
Query 775 CAAACATGTTTGATGCAATCTTTGATGCGTTCGTGTGGGCAATGGAGAAGGAAGGCGTTA 834
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 CAAACATGTTTGAAGCAATCTTTGATGCGTTCGTGTGGGCAATGGAGAAGGAAGGCGTTA 836
Query 835 AAAATTTACCAATGGTGGTGTCCGAGACCGGATGGCCATCCGCGGGGAACGGGAACTTTA 894
|| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 837 AAGATTTACCAATGGTGGTGTCCGAGACAGGATGGCCATCCGCGGGGAATGGGAACTTTA 896
Query 895 CCACGCCGGCTATTGCGTCCACCTACAACAGAAATTTTGTGAAGCATATAGCAAGCGGAA 954
||||||||| ||| ||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 897 CCACGCCGGATATCGCGTCTACCTACAACAGAAATTTTGTGAGGCATATAGCAAGCGGAA 956
Query 955 AAGGGACGCCTAAAAGGCCTAACAAGAGCAT-GAACGGGTTTTTGTTTGCAACGTTCAAT 1013
|||| ||||||||||||||||||||| |||| || |||||| |||| ||||||||||||
Sbjct 957 AAGGAACGCCTAAAAGGCCTAACAAGGGCATCGAT-GGGTTTCTGTTCGCAACGTTCAAT 1015
Query 1014 GAAAATCAGAAGCCGGCCGGGACTGAACAAAACTTTGGTTTATACAATCCAAGTGATATG 1073
|||||||| ||||||| ||||||||||||||| ||||| || ||||||||||||||||||
Sbjct 1016 GAAAATCAAAAGCCGGTCGGGACTGAACAAAATTTTGGGTTGTACAATCCAAGTGATATG 1075
Query 1074 AAGCCTATCTACAAGCTATTCTAAGTGTG 1102
||||| |||||||||||||| |||| |||
Sbjct 1076 AAGCCAATCTACAAGCTATTTTAAGCGTG 1104
> Ahg941587 jgi|Araly1|941587|scaffold_602131.1
Length=1080
Score = 1280 bits (693), Expect = 0.0
Identities = 947/1071 (88%), Gaps = 12/1071 (1%)
Strand=Plus/Plus
Query 55 TCATCATGCTCTATTC-ACCTAAGAAGCTGTTCTTGTTCTTCCTCTCGTGCATTGTGCTG 113
|||||||| ||||||| | |||||||||| |||||||||||| ||| |||||||||||||
Sbjct 16 TCATCATGTTCTATTCGA-CTAAGAAGCTATTCTTGTTCTTCTTCTTGTGCATTGTGCTG 74
Query 114 TA-TGTCAACTCCAACAACAGTGGCTTCGTAACCGCAGCAAATAGCATCGGCTTGAACTA 172
| |||||||| |||||||| ||| ||||||||||||| ||||||||| |||||||||||
Sbjct 75 -ATTGTCAACTACAACAACAATGGTTTCGTAACCGCAGTAAATAGCATTGGCTTGAACTA 133
Query 173 CGGACTCCTCGGTGACAACCTCCCGTCTCCTTCCAATGTTATCAACCTTTACAAGTCCAT 232
|| |||||||| || |||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 134 TGGTCTCCTCGGAGATAACCTCCCGTCTCCGTCCAATGTTATAAACCTTTACAAGTCCAT 193
Query 233 AGGCATTAGTAGAATCCGAATCTTCGACCCGAACACTGAGGTACTCAATGCCTTACGTGG 292
|| ||||| || ||||||||||||||||||||||||||| || || || || ||||| ||
Sbjct 194 AGACATTACTAAAATCCGAATCTTCGACCCGAACACTGAAGTTCTTAACGCTTTACGCGG 253
Query 293 TCACCGCGATATTGAAGTCACTGTTGGCGTTAAGGACCAAGACTTGGCTGCTCTTGCTGC 352
||||| ||||||| ||||||||| ||||||| |||||| ||||||||||||||||| ||
Sbjct 254 CCACCGTGATATTGCAGTCACTGTAGGCGTTAGGGACCAGGACTTGGCTGCTCTTGCAGC 313
Query 353 AAGCGAAGAAGCTGTTAAGGGCTGGTTCGCGGCCAACATCGAGTCTTACTTAGCTGACGT 412
|||||||||||||||||||||||||| ||| ||||||||||| |||||||| | |||||
Sbjct 314 TAGCGAAGAAGCTGTTAAGGGCTGGTTTGCGACCAACATCGAGCCTTACTTACCCGACGT 373
Query 413 CAACATCACATTTATTACCGTTGGTAACGAAGTCATCCCCGGACCAATCGGTCCTCAAGT 472
||||||| | || ||||| |||||||| ||||||||||| |||||||| ||| |||||||
Sbjct 374 CAACATCGCGTTCATTACTGTTGGTAATGAAGTCATCCCTGGACCAATTGGTTCTCAAGT 433
Query 473 GCTTCCCGTCATGCAGTCTCTAACCAACCTAGTCAAGTCGAGGAATCTTCCGATCTCGAT 532
||||||||||||||||||||| |||||||| |||| ||| ||||||||||| ||||||||
Sbjct 434 GCTTCCCGTCATGCAGTCTCTCACCAACCTGGTCAGGTCAAGGAATCTTCCAATCTCGAT 493
Query 533 AAGCACCGTGGTGGCTATGTCGAACCTGGAGCAGTCGTATCCACCTTCCGCGGGAATGTT 592
|||||| ||||||||||||| |||||| ||||| ||||| ||||||||||| ||||||||
Sbjct 494 AAGCACTGTGGTGGCTATGTGGAACCTCGAGCAATCGTACCCACCTTCCGCAGGAATGTT 553
Query 593 CACCTCCCAGGCGCGGGAACAACTTGTCCCCGTGTTGAAACTATTGTCTCAAACAAGCAC 652
||| || || ||||| ||||||||||| |||||| ||||||||||||||||||||| ||
Sbjct 554 CACGTCTCAAGCGCGTGAACAACTTGTTCCCGTGCTGAAACTATTGTCTCAAACAAATAC 613
Query 653 ACCAATCCTTGTCAACATATACCCTTACTTCGCTTATGCGTCCGACCCAGCCAACATCCG 712
|| || || || || || |||||||||||| |||||| |||||||||||| | |||||
Sbjct 614 GCCCATTCTCGTAAATATTTACCCTTACTTCCCTTATGTGTCCGACCCAGCGAGCATCCC 673
Query 713 TCTCGACTATGCCAGCTTTAACACTAAGTCCATCGTGGTCCAAGATGGATCATTGGGCTA 772
|||||||||||||| ||| || ||| || |||||||||| ||||||||| || |||||||
Sbjct 674 TCTCGACTATGCCACCTTCAATACTGAGGCCATCGTGGTACAAGATGGACCACTGGGCTA 733
Query 773 TTCAAACATGTTTGATGCAATCTTTGATGCGTTCGTGTGGGCAATGGAGAAGGAAGGCGT 832
|||||||||||||||| |||| ||||| || |||||||||||||||||||||||||||||
Sbjct 734 TTCAAACATGTTTGATTCAATATTTGACGCTTTCGTGTGGGCAATGGAGAAGGAAGGCGT 793
Query 833 TAAAAATTTACCAATGGTGGTGTCCGAGACCGGATGGCCATCCGCGGGGAACGGGAACTT 892
|||| ||||||||||||||||||||||||||||||||||||| || ||||| || |||||
Sbjct 794 TAAAGATTTACCAATGGTGGTGTCCGAGACCGGATGGCCATCTGCTGGGAATGGAAACTT 853
Query 893 TACCACGCCGGCTATTGC-G-TCCACCTACAACAGAAATTTTGTGAAGCATATAGCAAGC 950
||||||||||| ||| || | | ||||||||||||||||||||||| |||||| |||||
Sbjct 854 TACCACGCCGGATATCGCAGGT--ACCTACAACAGAAATTTTGTGAAACATATAACAAGC 911
Query 951 GGAAAAGGGACGCCTAA-AAGGCCTAACAAGAGCAT-GAACGGGTTTTTGTTTGCAACGT 1008
|||||||||||||| || ||| || |||||| |||| || || ||||||||||||||| |
Sbjct 912 GGAAAAGGGACGCCCAAGAAGCCC-AACAAGGGCATCGA-CGTGTTTTTGTTTGCAACAT 969
Query 1009 TCAATGAAAATCAGAAGCCGGCCGGGACTGAACAAAACTTTGGTTTATACAATCCAAGTG 1068
| |||||||||||||||||||| |||||||||||||| ||||| || |||||||||| ||
Sbjct 970 TTAATGAAAATCAGAAGCCGGCAGGGACTGAACAAAATTTTGGGTTGTACAATCCAAATG 1029
Query 1069 ATATGAAGCCTATCTACAAGCTATTCTAAGTGTGAAAGTTACTTAGACTTT 1119
|||||||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct 1030 ATATGAAGCCCATCTACAAGCTATTCTAAGTGTGAAAGTTTTTTGGACTTT 1080
> Ahg913138 jgi|Araly1|913138|Al_scaffold_0001_3392
Length=1062
Score = 1003 bits (543), Expect = 0.0
Identities = 820/955 (86%), Gaps = 14/955 (1%)
Strand=Plus/Plus
Query 150 GCAAATAGCATCGGCTTGAACTACGGACTCCTCGGTGACAACCTCCC-GTCTCCTTCCAA 208
||||||||||| ||||||||||| || ||||| || || |||||||| | | || |||||
Sbjct 115 GCAAATAGCATTGGCTTGAACTATGGCCTCCTTGGAGATAACCTCCCAG-CACCGTCCAA 173
Query 209 TGTTA-TCAACCTTTACAAGTCCATAGGCATTAGTAGAATCCGAATCTTCGACCCGAACA 267
|| || ||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 174 TG-TACTCAACCTTTACAAGTCCATAGGCATTACAAAAATCCGAATCTTCGACCCGAACA 232
Query 268 CTGAGGTACTCAATGCCTTACGTGGTCACCGCGATATTGAAGTCACTGTTGGCGTTAAGG 327
| ||||| || || |||||||| || ||| | ||||||||||||| |||||||| | ||
Sbjct 233 CAGAGGTTCTTAACGCCTTACGCGGCCACAACAATATTGAAGTCACGGTTGGCGTGAGGG 292
Query 328 ACCAAGACTTGGCTGCTCTTGCTGCAAGCGAAGAAGCTGTTAAGGGCT-GGTTCGCGGCC 386
|||| ||||||||||||||||| || ||||||||||||| ||||| || |||| || ||
Sbjct 293 ACCAGGACTTGGCTGCTCTTGCAGCTAGCGAAGAAGCTGCTAAGGACTGGGTT-GCAACC 351
Query 387 AACATCGAGTCTTACTTAGCTGACGTCAACATCACATTTATTACCGTTGGTAACGAAGTC 446
||||||||| |||||||||| ||||||||||| | || ||||| |||||||| ||||||
Sbjct 352 AACATCGAGCCTTACTTAGCCGACGTCAACATTTCGTTCATTACTGTTGGTAATGAAGTC 411
Query 447 ATCCCCGGACCAATCGGTCCTCAAGTGCTTCCCGTCATGCAGTCTCTAACCAACCTAGTC 506
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||
Sbjct 412 ATCCCCGGACCAATCGGTCCTCAAGTGCTTCCGGTCATGCAGTCTCTCACCAACCTCGTC 471
Query 507 AAGTCGAGGAATCTTCCGATCTCGATAAGCACCGTGGTGGCTATGTCGAACCTGGAGCAG 566
||||||||||||||||||||| || |||||||||||||||||||||| || || ||||
Sbjct 472 AAGTCGAGGAATCTTCCGATCGCGGTAAGCACCGTGGTGGCTATGTCAAATCTTAAGCAA 531
Query 567 TCGTATCCACCTTCCGCGGGAATGTTCACCTCCCAGGCGCGGGAACAACTTGTCCCCGTG 626
|| || ||||||||||| |||| |||||| ||||| ||| | ||||||||||||||||||
Sbjct 532 TCATACCCACCTTCCGCTGGAAAGTTCACGTCCCAAGCGTGAGAACAACTTGTCCCCGTG 591
Query 627 -TTGAAACTATTGTCTCAAACAAGCACACCAATCCTTGTCAACATATACCCTTACTTCGC 685
|| |||||||||||||||||||| || || || || ||||| || |||||||||||| |
Sbjct 592 CTT-AAACTATTGTCTCAAACAAGTACGCCTATTCTCGTCAATATTTACCCTTACTTCCC 650
Query 686 TTATGCGTCCGACCCAGCCAACATCCGTCTCGACTATGCCAGCTTTAACACTAAG-TCCA 744
||| ||||| |||||| | ||||||| |||||||||||| | ||| |||||| || ||
Sbjct 651 TTACGCGTCTGACCCAACGAACATCCCTCTCGACTATGCTACCTTCAACACTGAGGTCG- 709
Query 745 TCGTGGTCCAAGATGGATCATTGGGCTATTCAAACATGTTTGATGCAATCTTTGATGCGT 804
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
Sbjct 710 TCGTGGTCCAAGATGGACCATTGGGCTATTCAAACATGTTTGATGCAATCTTTGACGCAT 769
Query 805 TCGTGTGGGCAATGGAGAAGGAAGGCGTTAAAAATTTACCAATGGTGGTGTCCGAGACCG 864
| |||||||| ||||||||||||||||| ||| ||||||| |||| ||||||||||| |
Sbjct 770 TTGTGTGGGCCATGGAGAAGGAAGGCGTGAAAGATTTACCTTTGGTAGTGTCCGAGACGG 829
Query 865 GATGGCCATCCGCGGGGAACGGGAACTTTACCACGCCGGCTATTGCGTCCACCTACAACA 924
|||||||||| || || || |||||||| ||||| |||| ||| ||| |||||| | |
Sbjct 830 GATGGCCATCTGCCGGAAATGGGAACTTAACCACACCGGATATCGCGGGTACCTACCATA 889
Query 925 GAAATTTTGTGAAGCATATAGC-AAGCGGAAAAGGGACGCCTAAAAGGCCTAACAA-GAG 982
||||||||||||||||| || | |||||||||||| |||||||| | || ||||| | |
Sbjct 890 GAAATTTTGTGAAGCATGTA-CTAAGCGGAAAAGGAACGCCTAAGCGACCCAACAATG-G 947
Query 983 CATGAACGGGTTTTTGTTTGCAACGTTCAATGAAAATCAGAAGCCGGCCGGGACTGAACA 1042
||| | |||||| | || ||||||||||| |||||||| |||||||| |||||||||||
Sbjct 948 AATGGATGGGTTTCTATTCGCAACGTTCAACGAAAATCAAAAGCCGGCAGGGACTGAACA 1007
Query 1043 AAACTTTGGTTTATACAATCCAAGTGATATGAAGCCTATCTACAAGCTATTCTAA 1097
|| ||||| || |||||||| ||||||||||| || |||||||||||||| |||
Sbjct 1008 GAATTTTGGGTTGTACAATCCTAGTGATATGAAACCCATCTACAAGCTATTTTAA 1062
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58125713870
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5