BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G20340.1
Length=1065
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941587 jgi|Araly1|941587|scaffold_602131.1 1365 0.0
Ahg488942 jgi|Araly1|488942|fgenesh2_kg.6__2076__AT5G20330.1 1182 0.0
Ahg913138 jgi|Araly1|913138|Al_scaffold_0001_3392 1138 0.0
> Ahg941587 jgi|Araly1|941587|scaffold_602131.1
Length=1080
Score = 1365 bits (739), Expect = 0.0
Identities = 893/968 (92%), Gaps = 8/968 (1%)
Strand=Plus/Plus
Query 102 TGGCTTCGTAAACGCAGCAAATAGCATTGGCTTGAACTACGGTCTCCTCGGAGATAACCT 161
||| ||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 95 TGGTTTCGTAACCGCAGTAAATAGCATTGGCTTGAACTATGGTCTCCTCGGAGATAACCT 154
Query 162 CCCATCTCCGTCAAAAGTTATAACCCTTTACAAGTCCATAGACATCACTAAAATCCGAAT 221
||| |||||||| || ||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 155 CCCGTCTCCGTCCAATGTTATAAACCTTTACAAGTCCATAGACATTACTAAAATCCGAAT 214
Query 222 CTTCGACCCAAACACTGAGGTTCTTAACGCTTTACGTGGCCATCGTGATATTGCGGTCAC 281
||||||||| |||||||| ||||||||||||||||| ||||| ||||||||||| |||||
Sbjct 215 CTTCGACCCGAACACTGAAGTTCTTAACGCTTTACGCGGCCACCGTGATATTGCAGTCAC 274
Query 282 AGTAGGAGTTAGGGACCAGGACTTGGCTGCTCTTTCAGCTAGCGAAGAAGCTGTTAAGGG 341
||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 275 TGTAGGCGTTAGGGACCAGGACTTGGCTGCTCTTGCAGCTAGCGAAGAAGCTGTTAAGGG 334
Query 342 CTGGTTTGCGACCAACATCGAGCCTTACTTATCCGACATCAACATCGCGTTCATTACTGT 401
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 335 CTGGTTTGCGACCAACATCGAGCCTTACTTACCCGACGTCAACATCGCGTTCATTACTGT 394
Query 402 TGGTAACGAAGTCATCCCCGGACCAATCGGTCCTCAAGTGCTTCCAGTCATGCAGTCTCT 461
|||||| ||||||||||| |||||||| ||| ||||||||||||| ||||||||||||||
Sbjct 395 TGGTAATGAAGTCATCCCTGGACCAATTGGTTCTCAAGTGCTTCCCGTCATGCAGTCTCT 454
Query 462 CACCAACCTCGTCAAGTCAAGGAATCTTCCTATCTCGATAAGCACGGTGGTGGCTATGTG 521
||||||||| |||| ||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 455 CACCAACCTGGTCAGGTCAAGGAATCTTCCAATCTCGATAAGCACTGTGGTGGCTATGTG 514
Query 522 GAACCTCGAGCAATCATACCCACCTTCCGCAGGAATGTTCACGTCTCAAGCGCGTGAACA 581
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 515 GAACCTCGAGCAATCGTACCCACCTTCCGCAGGAATGTTCACGTCTCAAGCGCGTGAACA 574
Query 582 ACTTGTCCCCGTGCTGAAACTATTATCCCAAACAAATTCGCCTATCCTCGTAAAAATCTA 641
|||||| ||||||||||||||||| || ||||||||| |||| || |||||||| || ||
Sbjct 575 ACTTGTTCCCGTGCTGAAACTATTGTCTCAAACAAATACGCCCATTCTCGTAAATATTTA 634
Query 642 CCCTTACTTCTCC-TATGCGTCCGACCCATCTAGCATCCGTTTGGACTATGCCACCTTCA 700
|||||||||| || |||| |||||||||| | ||||||| | | ||||||||||||||||
Sbjct 635 CCCTTACTTC-CCTTATGTGTCCGACCCAGCGAGCATCCCTCTCGACTATGCCACCTTCA 693
Query 701 ACACTGAGGCCATCGTGGTACAAGATGGATCACTGGGCTATTCAAACATGTTTGATGCAA 760
| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 694 ATACTGAGGCCATCGTGGTACAAGATGGACCACTGGGCTATTCAAACATGTTTGATTCAA 753
Query 761 TCTTTGATGCGTTCGTGTGGGCAATGGAGAAGGAAGGCGTTAAAGATTTACCAATGGTGG 820
| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 754 TATTTGACGCTTTCGTGTGGGCAATGGAGAAGGAAGGCGTTAAAGATTTACCAATGGTGG 813
Query 821 TGTCCGAGACCGGATGGCCATCTGCCGGGAATGGAAACATTACCACGCCGGATATCGCGG 880
||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
Sbjct 814 TGTCCGAGACCGGATGGCCATCTGCTGGGAATGGAAACTTTACCACGCCGGATATCGCAG 873
Query 881 GTACCTATAACAGAAATTTCGTGAAGCATATAGCAAGCGGAAAAGGTACACCTAA-AAGG 939
||||||| ||||||||||| ||||| |||||| ||||||||||||| || || || |||
Sbjct 874 GTACCTACAACAGAAATTTTGTGAAACATATAACAAGCGGAAAAGGGACGCCCAAGAAGC 933
Query 940 CCTAACAAAGGCATCGACGGGTTTTTGTTTGCAAC-TTTCAATGAAAATCAAAAGCCGGT 998
|| ||||| |||||||||| ||||||||||||||| ||| ||||||||||| |||||||
Sbjct 934 CC-AACAAGGGCATCGACGTGTTTTTGTTTGCAACATTT-AATGAAAATCAGAAGCCGG- 990
Query 999 C-GGGACTGAACAAAACTTTGGGTTATACAATCCGAATGATATGAAGCCCATCTACAATC 1057
| |||||||||||||| |||||||| |||||||| ||||||||||||||||||||||| |
Sbjct 991 CAGGGACTGAACAAAATTTTGGGTTGTACAATCCAAATGATATGAAGCCCATCTACAAGC 1050
Query 1058 TATTCTAA 1065
||||||||
Sbjct 1051 TATTCTAA 1058
> Ahg488942 jgi|Araly1|488942|fgenesh2_kg.6__2076__AT5G20330.1
Length=1104
Score = 1182 bits (640), Expect = 0.0
Identities = 856/962 (89%), Gaps = 8/962 (1%)
Strand=Plus/Plus
Query 108 CGTAAACGCAGCAAATAGCATTGGCTTGAACTACGGTCTCCTCGGAGATAACCTCCCATC 167
||||| ||||||||||||||| |||||||||||||| ||||||||||| |||||||| ||
Sbjct 142 CGTAACCGCAGCAAATAGCATCGGCTTGAACTACGGCCTCCTCGGAGACAACCTCCCCTC 201
Query 168 TCCGTCAAAAGTTAT-AACCCTTTACAAGTCCATAGACATCACTAAAATCCGAATCTTCG 226
|||||| || ||||| || ||||||||||||||||| ||| |||||||||||||||||||
Sbjct 202 TCCGTCCAATGTTATCAA-CCTTTACAAGTCCATAGGCATTACTAAAATCCGAATCTTCG 260
Query 227 ACCCAAACACTGAGGTTCTTAACGCTTTACGTGGCCATCGTGATATTGCGGTCACAGTAG 286
|||| |||||||||||||| || || |||||||| || || ||||| | ||||| || |
Sbjct 261 ACCCGAACACTGAGGTTCTCAATGCCTTACGTGGTCACCGCGATATAGAAGTCACTGTTG 320
Query 287 GAGTTAGGGACCAGGACTTGGCTGCTCTTTCAGCTAGCGAAGAAGCTGTTAAGGGCTGGT 346
| |||| ||||| ||||||||||||||| |||| |||||||| ||||||||||||||||
Sbjct 321 GCGTTAAAGACCAAGACTTGGCTGCTCTTGCAGCAAGCGAAGAGGCTGTTAAGGGCTGGT 380
Query 347 TTGCGACCAACATCGAGCCTTACTTATCCGACATCAACATCGCGTTCATTACTGTTGGTA 406
||||| ||||||||||| |||||||| | ||| |||||||||| || ||||| ||||||
Sbjct 381 TTGCGGCCAACATCGAGTCTTACTTAGCTGACGTCAACATCGCATTTATTACCATTGGTA 440
Query 407 ACGAAGTCATCCCCGGACCAATCGGTCCTCAAGTGCTTCCAGTCATGCAGTCTCTCACCA 466
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 441 ACGAAGTCATCCCAGGACCAATCGGTCCTCAAGTGCTTCCGGTCATGCAGTCTCTCACCA 500
Query 467 ACCTCGTCAAGTCAAGGAATCTTCCTATCTCGATAAGCACGGTGGTGGCTATGTGGAACC 526
||||||||||||| || ||||||||||||| ||||||||| ||||| ||||||| |||||
Sbjct 501 ACCTCGTCAAGTCGAGAAATCTTCCTATCTTGATAAGCACCGTGGTAGCTATGTCGAACC 560
Query 527 TCGAGCAATCATACCCACCTTCCGCAGGAATGTTCACGTCTCAAGCGCGTGAACAACTTG 586
||||||| || |||||||||||||| ||||||||||| || || || || ||||||||||
Sbjct 561 TCGAGCAGTCGTACCCACCTTCCGCGGGAATGTTCACCTCCCAGGCTCGGGAACAACTTG 620
Query 587 TCCCCGTGCTGAAACTATTATCCCAAACAAATTCGCCTATCCTCGTAAAAATCTACCCTT 646
||||||| ||||||||||| || ||||||| | | || ||||| || || || |||||||
Sbjct 621 TCCCCGTACTGAAACTATTGTCACAAACAAGTACACCGATCCTTGTCAACATATACCCTT 680
Query 647 ACTTCTCC-TATGCGTCCGACCCA-TCTAGCATCCGTTTGGACTATGCCACCTTCAACAC 704
||||| || ||||||||||||||| | || ||||| | | |||||||||||||||||||
Sbjct 681 ACTTC-CCTTATGCGTCCGACCCAGT-TAACATCCCTCTCAACTATGCCACCTTCAACAC 738
Query 705 TGAGGCCATCGTGGTACAAGATGGATCACTGGGCTATTCAAACATGTTTGATGCAATCTT 764
||||||||| |||| ||||||||| || |||| ||||||||||||||||| ||||||||
Sbjct 739 TGAGGCCATATTGGTCCAAGATGGACCATTGGGTTATTCAAACATGTTTGAAGCAATCTT 798
Query 765 TGATGCGTTCGTGTGGGCAATGGAGAAGGAAGGCGTTAAAGATTTACCAATGGTGGTGTC 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 799 TGATGCGTTCGTGTGGGCAATGGAGAAGGAAGGCGTTAAAGATTTACCAATGGTGGTGTC 858
Query 825 CGAGACCGGATGGCCATCTGCCGGGAATGGAAACATTACCACGCCGGATATCGCGGGTAC 884
|||||| ||||||||||| || |||||||| ||| |||||||||||||||||||| |||
Sbjct 859 CGAGACAGGATGGCCATCCGCGGGGAATGGGAACTTTACCACGCCGGATATCGCGTCTAC 918
Query 885 CTATAACAGAAATTTCGTGAAGCATATAGCAAGCGGAAAAGGTACACCTAAAAGGCCTAA 944
||| ||||||||||| |||| ||||||||||||||||||||| || ||||||||||||||
Sbjct 919 CTACAACAGAAATTTTGTGAGGCATATAGCAAGCGGAAAAGGAACGCCTAAAAGGCCTAA 978
Query 945 CAAAGGCATCGACGGGTTTTTGTTTGCAACTTTCAATGAAAATCAAAAGCCGGTCGGGAC 1004
||| |||||||| |||||| |||| ||||| |||||||||||||||||||||||||||||
Sbjct 979 CAAGGGCATCGATGGGTTTCTGTTCGCAACGTTCAATGAAAATCAAAAGCCGGTCGGGAC 1038
Query 1005 TGAACAAAACTTTGGGTTATACAATCCGAA-TGATATGAAGCCCATCTACAATCTATTCT 1063
||||||||| |||||||| |||||||| || |||||||||||| |||||||| ||||| |
Sbjct 1039 TGAACAAAATTTTGGGTTGTACAATCC-AAGTGATATGAAGCCAATCTACAAGCTATTTT 1097
Query 1064 AA 1065
||
Sbjct 1098 AA 1099
> Ahg913138 jgi|Araly1|913138|Al_scaffold_0001_3392
Length=1062
Score = 1138 bits (616), Expect = 0.0
Identities = 926/1075 (86%), Gaps = 23/1075 (2%)
Strand=Plus/Plus
Query 1 ATGCTCTATTTGC-CTAAGAAACT-CTTCTTGTTCTTCTTCTCGTGCATTGTGGTGATTG 58
||| |||| || | ||||||| | | ||||||||||| |||| |||||| || |||||
Sbjct 1 ATGGTCTA-TTCCTCTAAGAAGTTGC-TCTTGTTCTTCCTCTCATGCATTATGCTGATTT 58
Query 59 TCAACTACAACAATAGTGACTTCGTAAACGCAGCAAATAGCATTGGCTTCGTAAACGCA- 117
|||||||||||| ||||| ||||||| ||||||||||||||||||||| | ||| |
Sbjct 59 TCAACTACAACACTAGTGGCTTCGTAGCCGCAGCAAATAGCATTGGCTT-G--AAC-TAT 114
Query 118 GCAAATAGCATTGGCTTGAACTACGGTCTCCTCGGAGATAACCTCCCATCTCCGTCAAAA 177
||||||||||||||||||||||| || ||||| ||||||||||||||| | ||||| ||
Sbjct 115 GCAAATAGCATTGGCTTGAACTATGGCCTCCTTGGAGATAACCTCCCAGCACCGTCCAAT 174
Query 178 GTTA-T-AACCCTTTACAAGTCCATAGACATCACTAAAATCCGAATCTTCGACCCAAACA 235
| || | || ||||||||||||||||| ||| || |||||||||||||||||||| ||||
Sbjct 175 G-TACTCAA-CCTTTACAAGTCCATAGGCATTACAAAAATCCGAATCTTCGACCCGAACA 232
Query 236 CTGAGGTTCTTAACGCTTTACGTGGCCATC-GTGATATTGCGGTCACAGTAGGAGTTAGG 294
| |||||||||||||| ||||| ||||| | |||||| ||||| || || || |||
Sbjct 233 CAGAGGTTCTTAACGCCTTACGCGGCCA-CAACAATATTGAAGTCACGGTTGGCGTGAGG 291
Query 295 GACCAGGACTTGGCTGCTCTTTCAGCTAGCGAAGAAGCTGTTAAGGGCTGGTTTGCGACC 354
||||||||||||||||||||| |||||||||||||||||| ||||| |||| |||| |||
Sbjct 292 GACCAGGACTTGGCTGCTCTTGCAGCTAGCGAAGAAGCTGCTAAGGACTGGGTTGCAACC 351
Query 355 AACATCGAGCCTTACTTATCCGACATCAACATCGCGTTCATTACTGTTGGTAACGAAGTC 414
|||||||||||||||||| ||||| ||||||| ||||||||||||||||||| ||||||
Sbjct 352 AACATCGAGCCTTACTTAGCCGACGTCAACATTTCGTTCATTACTGTTGGTAATGAAGTC 411
Query 415 ATCCCCGGACCAATCGGTCCTCAAGTGCTTCCAGTCATGCAGTCTCTCACCAACCTCGTC 474
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 412 ATCCCCGGACCAATCGGTCCTCAAGTGCTTCCGGTCATGCAGTCTCTCACCAACCTCGTC 471
Query 475 AAGTCAAGGAATCTTCCTATCTCGATAAGCACGGTGGTGGCTATGTGGAACCTCGAGCAA 534
||||| ||||||||||| ||| || ||||||| ||||||||||||| || || |||||
Sbjct 472 AAGTCGAGGAATCTTCCGATCGCGGTAAGCACCGTGGTGGCTATGTCAAATCTTAAGCAA 531
Query 535 TCATACCCACCTTCCGCAGGAATGTTCACGTCTCAAGCGCGTGAACAACTTGTCCCCGTG 594
||||||||||||||||| |||| ||||||||| |||||| | ||||||||||||||||||
Sbjct 532 TCATACCCACCTTCCGCTGGAAAGTTCACGTCCCAAGCGTGAGAACAACTTGTCCCCGTG 591
Query 595 CTGAAACTATTATCCCAAACAAATTCGCCTATCCTCGTAAAAATCTACCCTTACTTCTCC 654
|| |||||||| || ||||||| | ||||||| ||||| || || |||||||||||| ||
Sbjct 592 CTTAAACTATTGTCTCAAACAAGTACGCCTATTCTCGTCAATATTTACCCTTACTTC-CC 650
Query 655 T-ATGCGTCCGACCCATCTAGCATCCGTTTGGACTATGCCACCTTCAACACTGAGGCCAT 713
| | ||||| |||||| | | ||||| | | |||||||| |||||||||||||||| | |
Sbjct 651 TTACGCGTCTGACCCAACGAACATCCCTCTCGACTATGCTACCTTCAACACTGAGGTCGT 710
Query 714 CGTGGTACAAGATGGATCACTGGGCTATTCAAACATGTTTGATGCAATCTTTGATGCGTT 773
|||||| ||||||||| || |||||||||||||||||||||||||||||||||| || ||
Sbjct 711 CGTGGTCCAAGATGGACCATTGGGCTATTCAAACATGTTTGATGCAATCTTTGACGCATT 770
Query 774 CGTGTGGGCAATGGAGAAGGAAGGCGTTAAAGATTTACCAATGGTGGTGTCCGAGACCGG 833
|||||||| ||||||||||||||||| ||||||||||| |||| ||||||||||| ||
Sbjct 771 TGTGTGGGCCATGGAGAAGGAAGGCGTGAAAGATTTACCTTTGGTAGTGTCCGAGACGGG 830
Query 834 ATGGCCATCTGCCGGGAATGGAAACATTA-CCACGCCGGATATCGCGGGTACCTATAACA 892
||||||||||||||| ||||| ||| ||| |||| |||||||||||||||||||| | |
Sbjct 831 ATGGCCATCTGCCGGAAATGGGAAC-TTAACCACACCGGATATCGCGGGTACCTACCATA 889
Query 893 GAAATTTCGTGAAGCATATAGC-AAGCGGAAAAGGTACACCTAAAAGGCCTAACAAAGGC 951
||||||| ||||||||| || | |||||||||||| || ||||| | || ||||| ||
Sbjct 890 GAAATTTTGTGAAGCATGTA-CTAAGCGGAAAAGGAACGCCTAAGCGACCCAACAATGGA 948
Query 952 ATCGACGGGTTTTTGTTTGCAACTTTCAATGAAAATCAAAAGCCGGTC-GGGACTGAACA 1010
|| || |||||| | || ||||| ||||| |||||||||||||||| | |||||||||||
Sbjct 949 ATGGATGGGTTTCTATTCGCAACGTTCAACGAAAATCAAAAGCCGG-CAGGGACTGAACA 1007
Query 1011 AAACTTTGGGTTATACAATCCGAATGATATGAAGCCCATCTACAATCTATTCTAA 1065
|| |||||||| |||||||| | ||||||||| ||||||||||| ||||| |||
Sbjct 1008 GAATTTTGGGTTGTACAATCCTAGTGATATGAAACCCATCTACAAGCTATTTTAA 1062
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39647833680
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5