BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G20370.1

Length=528
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg941590 jgi|Araly1|941590|scaffold_602134.1                        693    0.0  


> Ahg941590 jgi|Araly1|941590|scaffold_602134.1
Length=554

 Score =  693 bits (375),  Expect = 0.0
 Identities = 484/532 (91%), Gaps = 26/532 (5%)
 Strand=Plus/Plus

Query  1    ATGGCGGCTACTGGAAGATCAAGCCGATCAGTTCTACGTCCTCTCTCTTCTTCACAGAGA  60
            ||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||
Sbjct  22   ATGGCGGCTACTGGAAGATCAAGCCGATCAGTTCTTCGTCCTCTTTCTTCTTCCCAGAGA  81

Query  61   TTACACAACAatcatcatcatcatcatcGTCAACGATCTCCGTCTCCTTGCAACAAGAAT  120
            ||  || |||| ||  ||||||||||||||||||||||||||||||||||||||   |||
Sbjct  82   TT--AC-ACAA-CA--ATCATCATCATCGTCAACGATCTCCGTCTCCTTGCAAC---AAT  132

Query  121  CTCAATCTCCGATTGAA-GTTTTATTCTCCCGGAAGCAT-CC--CGAAACCATCCGTCGT  176
            |||||||||||||| || ||||| ||||||||||| ||| ||  ||||||| | |  |||
Sbjct  133  CTCAATCTCCGATTAAAGGTTTT-TTCTCCCGGAAACATCCCGACGAAACCCT-C--CGT  188

Query  177  AACCGTTTCTTCTAATCATCAGACCAAGAGAAAGTGTTTGTGCTCTCCTACGACGCACCC  236
            ||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||
Sbjct  189  AACCGTTTCTTCTAATCATCAG---AAGAGAAAGTGTTTGTGCTCTCCTACGACGCACCC  245

Query  237  TGGTTCTTTCCGGTGCTCTTTTCACCGCCGATTAGAACATGAGAAATCCAAAACCCTAGC  296
            |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct  246  TGGTTCTTTCCGGTGCTCTTTTCACCGCCGGTTAGAACATGAGAAGTCCAAAACCCTAGC  305

Query  297  TTCTTCGACGGTCAAGCGTAACAATCGTGGTGATAATACGATTAGGGTTAATGTTGGATT  356
            ||||||||||| |||||||||||||||||||||| || ||||||     | |||||||||
Sbjct  306  TTCTTCGACGGCCAAGCGTAACAATCGTGGTGATTATCCGATTA-----A-TGTTGGATT  359

Query  357  GAATCTGAGGAAATTGGCGTTGATGAATTCGTTAGCGAAGATCGGTAGTGTTGAGGCGGA  416
            ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct  360  GAATCTGAGGAAATTGGCGTTGATGAATTCGCTAGCGAAGATTGGTAGTGTTGAGGCGGA  419

Query  417  GAGGTTTAGGAGATCTTTAGCAGCGAATTTGGCTAAACCGTCGTCTCTTCATAGCCATCG  476
            ||||||||||||||||||||| |||||| | | |||||||||||||||||||||||||| 
Sbjct  420  GAGGTTTAGGAGATCTTTAGCGGCGAATCTAGTTAAACCGTCGTCTCTTCATAGCCATCA  479

Query  477  CCGTCCTGAGTTCCGGCCACGACTTAGCCGCTTCCATGAAGATCAAGATTAA  528
            |||| |||||||||||||||| ||||||||||| ||| ||||||||||||||
Sbjct  480  CCGTTCTGAGTTCCGGCCACGGCTTAGCCGCTTTCATAAAGATCAAGATTAA  531



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19230416856


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5