BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G20380.1
Length=1839
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941591 jgi|Araly1|941591|scaffold_602135.1 2652 0.0
> Ahg941591 jgi|Araly1|941591|scaffold_602135.1
Length=1596
Score = 2652 bits (1436), Expect = 0.0
Identities = 1535/1584 (97%), Gaps = 2/1584 (0%)
Strand=Plus/Plus
Query 54 ctcctctctctGACACCAACAATGGCGAGACTTACCTTGAGACCCCACAATCACTTCTTC 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTCCTCTCTCTGACACCAACAATGGCGAGACTTACCTTGAGACCCCACAATCACTTCTTC 60
Query 114 TCATCTCCTATCTACGCACATAAACAACCTTTCCTCTCCGTATACACCATCTTCCCCCAC 173
|| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 TCCTCTCCTATCCACGCACATAAACAACCTTTCCTCTCCGTCTACACCATCTTCCCCCAC 120
Query 174 CACCACCAAAATCCTCTTATCAAATCAAGGGTTAAGTGCTCCGCCAGTGGTACTGAACGA 233
|| ||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 121 CATCACCACAATCCTCTTATCAAATCAAGGGTTAAGTGCTCCGCCAGTGGCACAGAACGA 180
Query 234 GTCAGAGAGAGTAAGAAGCTTCCTCCAAAGGATCCTATCGAAGACCCTAAACCCCAGCTT 293
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 181 GTCAGAGAGAGCAAGAAGCTTCCTCCAAAGGATTCTATCGAAGACCCTAAACCCCAGCTT 240
Query 294 CCGATTCCTGAAGTTCTCAGTACGGAAAC-GGGTTTTGAACAGAATTGGCCTCCATGGAA 352
|||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 241 CCGATTCCGGAAGTTCTCAGTACGGAAACAGGG-TTTGAACAGAATTGGCCTCCATGGAA 299
Query 353 AAATATACCTCAGAGATATAAGCTTATCGGCGCTACTTCTCTCGCCTTTGTTATCTGCAA 412
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 300 AAATATACCTCAGAGATATAAGCTTATTGGCGCTACTTCTCTCGCCTTTGTTATCTGCAA 359
Query 413 TATGGACAAGGTGAACTTGAGTATTGCTATAATACCAATGTCACACCAGTTTGGATGGAG 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TATGGACAAGGTGAACTTGAGTATTGCTATAATACCAATGTCACACCAGTTTGGATGGAG 419
Query 473 CTCATCTGTGGCTGGGTTGGTCCAGTCTTCCTTCTTTTGGGGTTATGCCTTGAGCCAGTT 532
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 420 CTCATCTGTGGCCGGGTTGGTCCAGTCATCCTTCTTTTGGGGTTATGCCTTGAGCCAGTT 479
Query 533 GCCTGGAGGTTGGCTTTCCAAGATTTTTGGCGGAAGAAAAGTGCTTGAGATTGGTGTCTT 592
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 480 GCCTGGAGGTTGGCTTTCCAAGATTTTTGGTGGAAGAAAAGTGCTTGAGATTGGTGTCTT 539
Query 593 TACATGGTCTTTCGCTACAGCTCTTGTTCCACTACTTGCTGGATTTATGCCCGGTTTGAT 652
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 540 TACATGGTCTTTCGCTACAGCTCTTGTTCCACTACTTGCTGGATTTATGCCTGGTTTAAT 599
Query 653 CTTTTCTCGAATTTTGGTGGGAATAGGAGAAGGTGTTTCCCCATCGGCTGCGACAGACCT 712
||||||||||||||||||||||||||||||||||||||| ||||| ||||| || |||||
Sbjct 600 CTTTTCTCGAATTTTGGTGGGAATAGGAGAAGGTGTTTCTCCATCAGCTGCAACGGACCT 659
Query 713 TATTGCCAGGACAATACCTGTTAAGGAGCGCTCAAGAGCGGTAGGCTTTGTTTTTGGAGG 772
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 660 TATTGCCAGGACAATACCTGTTAAAGAGCGCTCAAGGGCGGTAGGCTTTGTTTTTGGAGG 719
Query 773 ACTGAGTTTGGGGAGTGTAATGGGGCTTCTCTTGGCTCCTCCCATCATCGAAACCTTTAA 832
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 720 ATTGAGTTTGGGGAGTGTAATGGGGCTTCTCTTGGCTCCTCCCATTATCGAAACCTTTAA 779
Query 833 TTGGGAATCTGTCTTTTACTTGTTTGGTCTCCTTGGTGTTGGCTGGTTCGTCGGGTTTCA 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TTGGGAATCTGTCTTTTACTTGTTTGGTCTCCTTGGTGTTGGCTGGTTCGTCGGGTTTCA 839
Query 893 GTTTCTTAATGAAGAAGAAGTTTCATATAAAGGTAATGAGATCTCTACTTCGCATAAATC 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GTTTCTTAATGAAGAAGAAGTTTCATATAAAGGTAATGAGATCTCTACTTCGCATAAATC 899
Query 953 AGAAAACGCTACAAAGGAAGAGTTGGGGAGCTCATTGAAGGAGATTCCATGGAAGTCATT 1012
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 AGAAAACGCTACAAAGGAAGAGTTGGGGAGCTCATTGAAGGAGATTCCATGGAAGTCATT 959
Query 1013 TTTCCAAAGCCCGGCTGTTTGGGCAATGATATACACTCACTTTTGTGGAAGTTGGGGTCA 1072
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 960 TTTCCAAAGCTCGGCTGTTTGGGCAATGATATACACTCACTTTTGTGGAAGCTGGGGTCA 1019
Query 1073 CTATACCTGTTTATCTTGGCTACCAACTTATTTCAGTGAGGCTCTGAGTCTAAATTTGAC 1132
|||||||||||||||||||||||||||||||||||||||||| || | ||| ||||||||
Sbjct 1020 CTATACCTGTTTATCTTGGCTACCAACTTATTTCAGTGAGGCGCTTAATCTGAATTTGAC 1079
Query 1133 AGAAGCTGCTTGGGTTTCCATCCTTCCTCCACTGGCTTCGATTGTCGTGACAAGTCTTGC 1192
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1080 AGAAGCTGCTTGGGTTTCCATCCTTCCTCCATTGGCTTCGATTGTCGTGACAAGTATTGC 1139
Query 1193 TTCACAATTTGCTGATTACTTAATTACAAATGGAGTTGATACTACCACGGTCCGAAAGAT 1252
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1140 TTCACAATTTGCTGATTACTTAATTACAAATGGAGTTGAGACTACCACGGTCCGAAAGAT 1199
Query 1253 TTGTCAAACGATTGCGTTTGTGGCACCAGCGATCTGCATGACACTTTCATCTGTGGACAT 1312
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1200 TTGTCAAACGATTGCGTTTGTGTCCCCAGCGATCTGCATGACACTTTCATCTGTGGACAT 1259
Query 1313 TGGATTGCCACCATGGGAAATTGTAGGAATTTTGACAGCAGGCTTGGCCCTATCAAGTTT 1372
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1260 TGGATTGCCACCATGGGAAATTGTAGGAATCTTGACAGCAGGCTTGGCCCTATCAAGTTT 1319
Query 1373 TGCTTTATCAGGACTTTATTGTACTCATCAGGACATTTCACCCGAATATGCAAGCATACT 1432
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1320 TGCTTTATCAGGACTTTATTGTACTCATCAGGACATCTCACCCGAATATGCAAGCATACT 1379
Query 1433 CCTGGGTATTACAAACACAGTCGGGGCAGTACCTGGAATTGTAGGAGTGGCCCTAACTGG 1492
|||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1380 CCTGGGTATTACCAACACAGTGGGGGCAGTACCTGGGATTGTAGGAGTGGCCCTAACTGG 1439
Query 1493 TTTTCTCCTAGACTCGACCCATTCCTGGACTATGTCTCTATTCGTGCCATCAATATTCTT 1552
||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1440 TTTTCTCCTTGACTCAACCCATTCCTGGACTATGTCTCTATTCGTGCCATCGATATTCTT 1499
Query 1553 CTACTTGACGGGGACGGTTGTATGGTTGGCATTTGCAAGCAGTGAGCCTCAGACGTTCAG 1612
||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1500 CTACTTGACGGGGACAGTTGTATGGTTGGCATTTGCTAGCAGTGAGCCTCAGACGTTCAC 1559
Query 1613 AAAGGAAGACTCATAAGTTTTGTT 1636
|||||||||||||||||||||||
Sbjct 1560 TAAGGAAGACTCATAAGTTTTGTT 1583
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69057614185
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5