BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G20390.1
Length=1270
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930652 jgi|Araly1|930652|scaffold_303109.1 1162 0.0
Ahg941608 jgi|Araly1|941608|scaffold_602152.1 725 0.0
Ahg326432 jgi|Araly1|326432|fgenesh1_pm.C_scaffold_6001652 568 5e-161
Ahg887637 jgi|Araly1|887637|Al_scaffold_0026_5 438 4e-122
> Ahg930652 jgi|Araly1|930652|scaffold_303109.1
Length=996
Score = 1162 bits (629), Expect = 0.0
Identities = 832/932 (89%), Gaps = 6/932 (1%)
Strand=Plus/Plus
Query 206 GAGACAACCTCCCGCCTCCATCTGAAGTTATCAACCTCTACAAGTC-CTTAAGTGTTACC 264
|||||||||| || |||||||||||||||||||||||||||||||| |||||| | |||
Sbjct 62 GAGACAACCTTCCACCTCCATCTGAAGTTATCAACCTCTACAAGTCTTTTAAGTATAACC 121
Query 265 AATATTCGGATCTTCGACAC-AACTACGGATGTCCTTAACGCCTTTCGAGGGAATCGCAA 323
|||||||||||||| ||||| || ||| ||||||||||||||||| |||||||| || |
Sbjct 122 AATATTCGGATCTTTGACACGAA-TACAGATGTCCTTAACGCCTTCCGAGGGAACCGTGA 180
Query 324 TATCGGAGTTATGGTAGACGTGAAGAACCAAGACTTAGAGGCTCTTTCGGTCAGCGAAGA 383
||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 181 TATTGGAGTTATGGTAGGTGTGAAAAACCAAGACTTAGAGGCTCTTTCGGTCAGCGAAGA 240
Query 384 AGCTGTTAACACCTGGTTCGTGACCAACATTGAGCCTTACTTAGCTGATGTCAACATCAC 443
||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 241 CGCTGTTAACACATGGTTCGTGACCAACATTCAGCCTTACTTAGCTGATGTCAACATCAC 300
Query 444 GTTCATTGCTGTCGGGAACGAAGTCATCCCAGGGGAAATCGGCTCTTATGTGCTACCCGT 503
||||||| |||| ||||| ||| ||||||| || |||||||||||||| |||||||||||
Sbjct 301 GTTCATTACTGTTGGGAATGAAATCATCCCCGGAGAAATCGGCTCTTACGTGCTACCCGT 360
Query 504 CATGAAATCTCTCACCAACATTGTCAAGTCGAGGAGTCTCCCGATCTTGATCAGCACCAC 563
|||| |||||||||||||| |||||||||||||||||||||| |||||||| || |||||
Sbjct 361 CATGCAATCTCTCACCAACGTTGTCAAGTCGAGGAGTCTCCCAATCTTGATTAGTACCAC 420
Query 564 GGTGGCTATGACCAACCTTGGCCAGTCATATCCACCTTCGGCCGGAGATTTCATGCCTCA 623
|||||||||||||||||||||||| || ||||||||||| ||||||||||||| ||| ||
Sbjct 421 GGTGGCTATGACCAACCTTGGCCAATCGTATCCACCTTCCGCCGGAGATTTCACGCCCCA 480
Query 624 AGCACGTGAACAACTTACCCCGGTGCTGAAGTTTTTGTCTCAAACAAATACGCCTATCCT 683
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 481 AGCACGTGAACAACTTACCCCGGTGCTGAAGTTTTTGTCTCAAACAAATACACCTATCCT 540
Query 684 CGTCAACATCTACCCCTACTTCGCATATGCTGCTGATCCTATCAACATTCAGCTCGACTA 743
||||||||| |||||||||||||| ||||| ||||||||| |||||||||| || || ||
Sbjct 541 CGTCAACATTTACCCCTACTTCGCTTATGCAGCTGATCCTGTCAACATTCATCTTGATTA 600
Query 744 TGCCATCTTCAACACCAACAAGGTCGTGGTCCAAGACGGGCCACTTGGTTATACAAACAT 803
||| |||||||||||| | ||| ||||||||||| ||||||||||||||| |||||||
Sbjct 601 TGCAATCTTCAACACCGATGCGGTTGTGGTCCAAGATGGGCCACTTGGTTATTCAAACAT 660
Query 804 GTTCGATGTGATATTTGATGCGTTCGTATGGGCAATGGAGAAAGAAGGTGTGAAGGATTT 863
||| |||||||||||||||||||| |||||||||||||||||||| || | || |||||
Sbjct 661 GTTTGATGTGATATTTGATGCGTTTGTATGGGCAATGGAGAAAGAGGGCATAAAAGATTT 720
Query 864 ACCAATGGTGGTAACAGAAACTGGATGGCCATCTGCTGGTAACGGAAACTTAACGACTCC 923
||| |||||||||| || || |||||||| ||||| ||||||||||||||||| |||||
Sbjct 721 ACCGATGGTGGTAATGGAGACCGGATGGCCGTCTGCCGGTAACGGAAACTTAACAACTCC 780
Query 924 AGATATCGCATCTATATACAATACCAATTTTGTTAAACATGTGGAAAGCGGTAAAGGGAC 983
||||||| ||||| ||||| | ||||||||| |||||||| |||||||||||||||||
Sbjct 781 TTATATCGCGTCTATGTACAACAGCAATTTTGTCAAACATGTAGAAAGCGGTAAAGGGAC 840
Query 984 GCCAAAGAGACCAAAGAGTGGCATTAGTGGATTTCTATTTGCGACGTTCAATGAGAATCA 1043
|| ||||| ||||| | | |||| | ||||||| ||||||| ||||||||||| |||||
Sbjct 841 ACCGAAGAGGCCAAACAATAGCATAAATGGATTTTTATTTGCTACGTTCAATGAAAATCA 900
Query 1044 AAAGCCAGCGGGAACCGAACAAAATTTTGGGTTATA-TAATCCAACAGATATGAAGCCCA 1102
|||||| | |||||||||||||||||||| || || || ||| || |||||||||||||
Sbjct 901 GAAGCCACCTGGAACCGAACAAAATTTTGGATTGTACTA-TCCTACTGATATGAAGCCCA 959
Query 1103 TCTACAAGATGTTTTGATTTTTAGATTCTTGA 1134
|||||||| ||||||||||| ||||||||||
Sbjct 960 TCTACAAGTTGTTTTGATTTG-AGATTCTTGA 990
> Ahg941608 jgi|Araly1|941608|scaffold_602152.1
Length=1107
Score = 725 bits (392), Expect = 0.0
Identities = 539/611 (88%), Gaps = 6/611 (1%)
Strand=Plus/Plus
Query 527 TCAAGTCGAGGAGTCTCCCGATCTTGATCAGCACCACGGTGGCTATGACCAACCTTGGCC 586
|||||||||||| |||||||||| ||||||||||||| |||||||||||||| |||||||
Sbjct 495 TCAAGTCGAGGAATCTCCCGATCCTGATCAGCACCACCGTGGCTATGACCAATCTTGGCC 554
Query 587 AGTCATATCCACCTTCGGCCGGAGATTTCATGCCTCAAGCACGTGAACAACTTACCCCGG 646
| || ||||||||||||||||||||||| | ||||||||||||||||||||| || || |
Sbjct 555 AATCGTATCCACCTTCGGCCGGAGATTTTACGCCTCAAGCACGTGAACAACTAACTCCAG 614
Query 647 TGCTGAAGTTTTTGTCTCAAACAAATACGCCTATCCTCGTCAACATCTACCCCTACTTCG 706
||||||||||||| |||||||||| ||| ||||| ||||||||||||||||| |||||||
Sbjct 615 TGCTGAAGTTTTTATCTCAAACAAGTACACCTATTCTCGTCAACATCTACCCTTACTTCG 674
Query 707 CATATGCTGCTGATCCTATCAACATTCAGCTCGACTATGCCATCTTCAACACCAACAAGG 766
| |||||||||||| || |||||||||| || || || || | |||||||||| || ||
Sbjct 675 CTTATGCTGCTGATTCTGTCAACATTCATCTTGATTACGCAACCTTCAACACCGACGCGG 734
Query 767 TCGTGGTCCAAGACGGGCCACTTGGTTATACAAACATGTTCGATGTGATATTTGATGCGT 826
||||||| |||||||||||||| ||||| |||||||||||||||| |||||||||||||
Sbjct 735 TCGTGGTTCAAGACGGGCCACTAAGTTATTCAAACATGTTCGATGTAATATTTGATGCGT 794
Query 827 TCGTATGGGCAATGGAGAAAGAAGGTGTGAAGGATTTACCAATGGTGGTAACAGAAACTG 886
||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| || |
Sbjct 795 TCGTATGGGCAATGGAGAAAGAAGGCGTGAAAGATTTACCCATGGTGGTAACAGAGACCG 854
Query 887 GATGGCCATCTGCTGGTAACGGAAACTTAACGACTCCAGATATCGCATCTATATACAATA 946
||||||| ||||| |||||||| |||||||| || ||||||||||| |||||||||||
Sbjct 855 GATGGCCGTCTGCCGGTAACGGGAACTTAACAACGCCAGATATCGCGTCTATATACAACG 914
Query 947 CCAATTTTGTTAAACATGTGGAAAGCGGTAAAGGGACGCCAAAGAGACCAAAGAGTGGCA 1006
|||||||| |||||||||||||||||||||||||| || ||||| ||||| | | |||
Sbjct 915 GAAATTTTGTCAAACATGTGGAAAGCGGTAAAGGGACACCGAAGAGGCCAAACAATAGCA 974
Query 1007 TT-AGTGGATTTCTATTTGCGACGTTCAATGAGAATCAAAAGCCAGCGGGAACCGAACAA 1065
|| | ||||||| ||||||| ||||||||||| |||||||||||||| ||||||||||||
Sbjct 975 TTCA-TGGATTTTTATTTGCTACGTTCAATGAAAATCAAAAGCCAGCTGGAACCGAACAA 1033
Query 1066 AATTTTGGGTTATA-TAATCCAACAGATATGAAGCCCATCTACAAGAT-GTTTTGATTTT 1123
|||||||| || || || ||| || |||||||| || |||||||| || ||||| |||||
Sbjct 1034 AATTTTGGATTGTACTA-TCCTACTGATATGAAACCAATCTACAA-ATTGTTTTAATTTT 1091
Query 1124 TAGATTCTTGA 1134
|||||||||||
Sbjct 1092 TAGATTCTTGA 1102
Score = 634 bits (343), Expect = 0.0
Identities = 433/477 (91%), Gaps = 4/477 (1%)
Strand=Plus/Plus
Query 82 ATTATGGATTGTCATAGAAAGACGTTCTTGTTGAA-GTTTTTGTGCGTGGCATTTCTGTT 140
|||||||||| || || ||| |||| ||||| || | | |||||| ||||||| |||
Sbjct 23 ATTATGGATTATCCTAAAAATTCGTTGTTGTT-AATGCTCTTGTGCACGGCATTTTTGTC 81
Query 141 AAACTACAGCAATGTTGGCTTTGTAGACGCAGCAACAAACATTGGCTTGAACTACGGCCT 200
|||||||| || || |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 82 AAACTACAACAGTGGTGGCTTTGTAGATGCAGCAACAAACATTGGCTTGAACTACGGCCT 141
Query 201 CCTTGGAGACAACCTCCCGCCTCCATCTGAAGTTATCAACCTCTACAAGTCCTTAAGTGT 260
||| ||||||||||| || |||||||||||||||||||||||||||||||| |||||| |
Sbjct 142 CCTCGGAGACAACCTTCCACCTCCATCTGAAGTTATCAACCTCTACAAGTCTTTAAGTAT 201
Query 261 TACCAATATTCGGATCTTCGACAC-AACTACGGATGTCCTTAACGCCTTTCGAGGGAATC 319
|||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
Sbjct 202 TACCAATATTCGGATCTTCGACACGAA-TACGGATGTCCTTAACGCCTTTCGAGGGAACC 260
Query 320 GCAATATCGGAGTTATGGTAGACGTGAAGAACCAAGACTTAGAGGCTCTTTCGGTCAGCG 379
|| |||| ||| ||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 261 GCGATATTGGACTTATGGTAGGCGTTAAGAACCAAGACTTAGAGGCTCTTTCGGTCAGCG 320
Query 380 AAGAAGCTGTTAACACCTGGTTCGTGACCAACATTGAGCCTTACTTAGCTGATGTCAACA 439
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 321 AAGAAGCTGTTAACACATGGATCGTGACCAACATTGAGCCTTACTTAGCTGATGTCAACA 380
Query 440 TCACGTTCATTGCTGTCGGGAACGAAGTCATCCCAGGGGAAATCGGCTCTTATGTGCTAC 499
||||||||||| |||| ||||| ||| ||||||| || ||||||||||||||||||| |
Sbjct 381 TCACGTTCATTACTGTTGGGAATGAAATCATCCCTGGAAAAATCGGCTCTTATGTGCTCC 440
Query 500 CCGTCATGAAATCTCTCACCAACATTGTCAAGTCGAGGAGTCTCCCGATCTTGATCA 556
|||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 441 CCGTCATGAAGTCTCTCACCAACATTGTCAAGTCGAGGAATCTCCCGATCCTGATCA 497
> Ahg326432 jgi|Araly1|326432|fgenesh1_pm.C_scaffold_6001652
Length=843
Score = 568 bits (307), Expect = 5e-161
Identities = 469/544 (86%), Gaps = 23/544 (4%)
Strand=Plus/Plus
Query 85 ATGGATTGTCATAGAAAGA-CGTTCTTGTTGAAGTTTTTGTGCGTGGCATTTCTGTTAAA 143
|||||||||| || ||| | | |||||||||| | | | |||| || |||||||||||||
Sbjct 1 ATGGATTGTCCTA-AAAAATCATTCTTGTTGATGATCTCGTGCATGTCATTTCTGTTAAA 59
Query 144 CTACAGCAATGTTGGCTTTGTAGACGCAGCAACAAACATTGGCTTGAACTACGGCCTCCT 203
|| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TTATAACAATGTTGGCTTTGTAGACGCAGCAACAAACATTGGCTTGAACTACGGCCTCCT 119
Query 204 TGGAGACAACCTCCCGCCTCCATCTGAAGTTATCAACCTCTACAAGTCCTTAAGTGTTAC 263
||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 120 TGGAGACAACCTCCCACCTCCTTCTGAAGTTATCAACCTCTACAAGTCATTAAGTGTTAC 179
Query 264 CAATATTCGGATCTTCGACAC-AACTACGGATGTCCTTAACGCCTTTC-GAGGGAATCGC 321
|||||||||||| |||||||| || |||||||||||||||||| |||| ||||||| | |
Sbjct 180 CAATATTCGGATTTTCGACACGAA-TACGGATGTCCTTAACGC-TTTCCGAGGGAACCTC 237
Query 322 AATATCGGAGTTATGGTAGACGTGAAGAACCAAGACTTAGAGGCTCTTTCGGTCAGCGAA 381
|||| ||||||||||||| || ||||||||||||||| | ||||| ||||| | ||||
Sbjct 238 GATATTGGAGTTATGGTAGGTGTTAAGAACCAAGACTTACAAGCTCTCTCGGTAAACGAA 297
Query 382 GAAGCTGTTAACACCTGGTTCGTGACCAACATTGAGCCTTACTTAGCTGATGTCAACATC 441
|| ||||| || || |||||| ||||||||||||||||||| ||||| ||
Sbjct 298 GACGCTGT-AA-AC----------ACCAACGTTGAGCCTTACTTAGCTGACGTCAAAATT 345
Query 442 ACGTTCATTGCTGTCGGGAACGAAGTCATCCCAGGG-GAAATCGGCTCTTATGTGCTACC 500
|| |||||| |||| || || ||| |||||| | || |||||||| ||||| ||||||||
Sbjct 346 ACATTCATTACTGTTGGTAATGAAATCATCC-ATGGAGAAATCGGATCTTACGTGCTACC 404
Query 501 CGTCATGAAATCTCTCACCAACATTGTCAAGTCGAGGAGTCTCCCGATCTTGATCAGCAC 560
|||||| |||||||||||||| |||||||||||| ||||||||| ||||||||||||||
Sbjct 405 TGTCATGCAATCTCTCACCAACGTTGTCAAGTCGAAGAGTCTCCCAATCTTGATCAGCAC 464
Query 561 CACGGTGGCTA-TGACCAACCTTGGCCAGTCATATCCACCTTCGGCCGGAGATTTCATGC 619
||| ||||||| || || ||||||||||||||||||||||| ||||||||||||| ||
Sbjct 465 CACTGTGGCTAATGG--AATCTTGGCCAGTCATATCCACCTTCCGCCGGAGATTTCACGC 522
Query 620 CTCA 623
||||
Sbjct 523 CTCA 526
Score = 231 bits (125), Expect = 7e-60
Identities = 170/191 (89%), Gaps = 6/191 (3%)
Strand=Plus/Plus
Query 886 GGATGGCCATCTGCTGGTAACGGA-AACTTAACGACTCCAGATATCGCATCTATATACAA 944
||||||||||||||||||||| || ||||||| || ||||||||||| |||||||||||
Sbjct 652 GGATGGCCATCTGCTGGTAAC-GAGAACTTAAAAACGCCAGATATCGCGTCTATATACAA 710
Query 945 TACCAATTTTGTTAAACATGTGGAAAGCGGTAAAGGGA-CGCC-AAAGAGACCAAAGAGT 1002
||||||||||||||||||||||||||||| |||| |||| ||| |||||||| |||
Sbjct 711 CGGAAATTTTGTTAAACATGTGGAAAGCGGTAA-GGGAACGCCCAAA-AGACCAAACAGT 768
Query 1003 GGCATTAGTGGATTTCTATTTGCGACGTTCAATGAGAATCAAAAGCCAGCGGGAACCGAA 1062
||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||| |||
Sbjct 769 GGCATTAATGGATTTCTATTTGCTACGTTCAATGAGAATCAAAAGCCAGTTGGAACAGAA 828
Query 1063 CAAAATTTTGG 1073
||||||||||
Sbjct 829 AAAAATTTTGG 839
> Ahg887637 jgi|Araly1|887637|Al_scaffold_0026_5
Length=675
Score = 438 bits (237), Expect = 4e-122
Identities = 340/389 (87%), Gaps = 9/389 (2%)
Strand=Plus/Plus
Query 262 ACCAATATTCGGATCTTCGACA-CAACTACGGATGTCCTTAACGCCTTTCGAGGGAATCG 320
||||||||||||||||| || | || || ||||||||||||| |||| ||||| || |
Sbjct 4 ACCAATATTCGGATCTTTGATATGAA-TATGGATGTCCTTAACACCTTCCGAGGTAA-C- 60
Query 321 CA--ATATCGGAGTTATGGTAGACGTGAAGAACCAAGACTTAGAGGCTCTTTCGGTCAGC 378
|| |||| ||| ||||||||| |||||||||||||||||||||||||||| || || |
Sbjct 61 CATGATATTGGAATTATGGTAGGTGTGAAGAACCAAGACTTAGAGGCTCTTTTGGCCAAC 120
Query 379 GAAGAAGCTGTTAACACCTGGTTCGTGACCAACATTGAGCCTTACTTAGCTGATGTCAAC 438
||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 121 GAAGACGCTGTTAACACATGGTTCGTGACCAACATTGAGCCTTACTTATCTGATGTCAAC 180
Query 439 ATCACGTTCATTGCTGTCGGGAACGAAGTCATCCCAGGGGAAATCGGCTCTTATGTGCTA 498
|||||||||||| |||| | ||| ||| ||||||| || |||||||||||||| ||||||
Sbjct 181 ATCACGTTCATTACTGTTGAGAATGAAATCATCCCCGGAGAAATCGGCTCTTACGTGCTA 240
Query 499 CCCGTCATGAAATCTCTCACCAACATTGTCAAGTCGAGGAGTCTCCCGATCTTGATCAGC 558
||||||||| | |||||||||||| ||||||||||||||| |||||| |||||||| ||
Sbjct 241 CCCGTCATGCACTCTCTCACCAACGTTGTCAAGTCGAGGATTCTCCCAATCTTGATTAGT 300
Query 559 ACCACGGTGGCTA-TGACCAACCTTGGCCAGTCATATCCACCTTCGGCCGGAGATTTCA- 616
|||||||||| | ||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 301 ACCACGGTGGAAAATGACCAACCTTGGCCAGTCGTATCCACCTTCTGCCGGAGATTTCAC 360
Query 617 TGCCTCAAGCACGTGAACAACTTACCCCG 645
| || ||||| || |||||||||| ||||
Sbjct 361 TCCC-CAAGCCCGAGAACAACTTATCCCG 388
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47463031665
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5