BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G20400.1
Length=1238
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488949 jgi|Araly1|488949|fgenesh2_kg.6__2083__AT5G20400.1 1677 0.0
Ahg474077 jgi|Araly1|474077|fgenesh2_kg.1__4031__AT1G49390.1 1277 0.0
Ahg917070 jgi|Araly1|917070|Al_scaffold_0008_1821 617 5e-176
> Ahg488949 jgi|Araly1|488949|fgenesh2_kg.6__2083__AT5G20400.1
Length=1098
Score = 1677 bits (908), Expect = 0.0
Identities = 1008/1056 (95%), Gaps = 8/1056 (1%)
Strand=Plus/Plus
Query 24 AACAATGGAGAAGCCAAAGTTCAAGACTGTCCAAGAGGTGGTTGCAGCTGGCGAAGGACT 83
||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 AACCATGGAAAAGCCAAAGTTCAAGACTGTCCAAGAGGTGGTTGCAGCCGGCGAAGGACT 60
Query 84 GCCGGAGAGATATCTCCACGCACCCACCGGAGACGGCGAAGTTCAACCTCTTAACGCAGC 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 61 GCCGGAGAGATATCTCCACGCACCCACCGGAGACGGCGAAGTTCAACCTCTTAACGCTGC 120
Query 144 GGTACCGGAGATGGATATTCCGGCCATCGATCTGAATCTTCTCCTCTCTTCTTCTGAAG- 202
||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 121 GGTGCCGGAGATGGATATTCCGGCCATCGATCTCAGTCTTCTCCTCTCTTCTTCTGAAGA 180
Query 203 CTGGTCAACAAGAGCTGAGTAAACTTCACTCGGCACTCTCTACATGGGGCGTTGTTCAGG 262
| |||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 C-GGTCGAGAAGAGTTGAGTAAACTTCACTCGGCACTCTCTACATGGGGCGTTGTTCAGG 239
Query 263 TGATGAATCATGGAATTACAAAAGCGTTTCTTGACAAGATTTACAAGCTAACCAAGGAGT 322
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 240 TGATGAATCATGGAATTACAGAAGCGTTTCTTGACAAAATTTACAAGCTAACCAAGGAGT 299
Query 323 TCTTTGCGCTTCCGACCGAAGAGAAACAGAAGTGCGCGAGAGAGATTGATAGTATCCAAG 382
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 300 TCTTTGCGCTTCCGACCGAAGAGAAACAGAAGTGCGCGAGAGAGATTGGTAGTATCCAAG 359
Query 383 GATATGGTAACGACATGATTCTTTGGGATGATCAAGTTCTTGATTGGATCGACCGTTTGT 442
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GATATGGAAACGACATGATTCTTTGGGATGATCAAGTTCTTGATTGGATCGACCGTTTGT 419
Query 443 ATATTACTACTTACCCTGAAGATCAAAGACAACTTAATTTCTGGCCTGAAGTCCCACTTG 502
|||||||||| |||||||||||||| ||||||||||| ||||||||| |||||||||| |
Sbjct 420 ATATTACTACATACCCTGAAGATCAGAGACAACTTAAGTTCTGGCCTCAAGTCCCACTCG 479
Query 503 GATTCAGGGAAACTTTACATGAATACACAATGAAGCAACGGATAGTGATTGAGCAATTTT 562
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 480 GATTCAGGGAAACTTTACATGAATACACAATGAAGCAACGGATAGTGATTGAGAAATTCT 539
Query 563 TTAAGGCCATGGCTAGATCTTTGGAATTAGAAGAGAATAGTTTTCTAGACATGTATGGAG 622
|||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 540 TTAAAGCCATGGCTAGATCTTTGGAATTGGAAGAGAATAGTTTTCTAGACATGTATGGGG 599
Query 623 AAAGTGCTACGT-TGGATACTAGATTCAACATGTATCCACCATGTCCG-AGCCCGGACAA 680
|||||||||| | ||||||| ||| ||||||||||||| ||||||||| || ||||||||
Sbjct 600 AAAGTGCTAC-TATGGATACAAGACTCAACATGTATCCTCCATGTCCGAAG-CCGGACAA 657
Query 681 GGTTATTGGTGTTAAACCGCACGCTGATGGCTCGGCTATCACTCTTCTCTTACCCGACAA 740
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 658 GGTTATTGGGGTTAAACCGCACGCTGATGGCTCGGCTTTCACTCTTCTCTTACCCGACAA 717
Query 741 AGATGTCGG-AGGGCTTCAGTTCCAGAAAGATGGGAAGTGGTATAAAGCTCCTATAGTCC 799
|||||| || |||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 718 AGATGT-GGAAGGGCTTCAGTTCCTCAAAGATGGGAAATGGTATAAAGCTCCTATAGTCC 776
Query 800 CTGATACAATTTTGATCAATGTTGGTGATCAAATGGAGATAATGAGCAATGGGATATACA 859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 CTGATACAATTTTGATCAATGTTGGTGATCAAATGGAGATAATGAGCAATGGGATATACA 836
Query 860 AGAGCCCGGTTCATAGAGTGGTGACTAACAGAGAAAAGGAAAGAATATCTGTGGCAACTT 919
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 837 AGAGCCCGGTTCATAGAGTGGTGACTAACAGAGAAAAGGAAAGGATATCTGTGGCAACGT 896
Query 920 TTTGCATTCCAGGTGCAGATAAAGAGATTCAGCCTGTGAATGAGCTTGTGTCTGAGGCAA 979
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 897 TTTGCATTCCAGGTGCAGACAAAGAGATTCAGCCTGTGGATGAGCTTGTGTCTGAGGCAA 956
Query 980 GACCAAGATTATATAAAACAGTTAAGAAGTATGTGGAGCTCTACTTCAAGTACTATCAAC 1039
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 GACCAAGATTGTATAAAACAGTTAAGAAGTATGTGGAGCTCTACTTCAAGTACTATCAAC 1016
Query 1040 AAGGCCGAAGACCTATTGAAGCTGCATTGATCTGAT 1075
| || ||| |||||||||||||||||||||||||||
Sbjct 1017 AGGGTCGACGACCTATTGAAGCTGCATTGATCTGAT 1052
> Ahg474077 jgi|Araly1|474077|fgenesh2_kg.1__4031__AT1G49390.1
Length=1048
Score = 1277 bits (691), Expect = 0.0
Identities = 934/1052 (89%), Gaps = 14/1052 (1%)
Strand=Plus/Plus
Query 28 ATGGAGAAGCCAAAGTTCAAGACTGTCCAAGAGGTGGTTGCAGCTGGCGAAGGACTGCCG 87
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1 ATGGAGAAGCCAAAGTTCAAGACTGTCCAAGAGGTGGTTGCAGCCGGCGAAGGACTACCG 60
Query 88 GAGAGATATCTCCACGCA-CCCACCGGAGACGGCG-AAGTTCAACCTCTTAACGCAGCGG 145
|||||||||||||| | | || ||| | || |||| ||| |||||||||||||| |||
Sbjct 61 GAGAGATATCTCCATG-AGCCAACCAGCGAAGGCGAAAG-TCAACCTCTTAACGGTTCGG 118
Query 146 TACCGGAGATGGATATTCCGGCCATCGATCTGAATCTTCTCCTCTCTTCTTCTGAAGCTG 205
| ||||||||||||||||| ||||||||||| | ||||||| ||||||||||||||| |
Sbjct 119 TGCCGGAGATGGATATTCCAGCCATCGATCTCAGTCTTCTCTTCTCTTCTTCTGAAGAGG 178
Query 206 GTCAACAAGAGCTG-AGTAAACTTCACTCGGCACTCTCTACATGGGGCGTTGTTCAGGTG 264
||| | ||||| || || ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 179 GTCGAGAAGAGTTGAAG-AAACTTCACTCAGCACTATCTACATGGGGCGTTGTTCAGGTG 237
Query 265 ATGAATCATGGAATTACAAAAGCGTTTCTTGACAAGATTTACAAGCTAACCAAGGAGTTC 324
||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||
Sbjct 238 ATGAATCATGGAATTACTGAAGAGTTTCTTGACAAGATTTACAAGCTAACCAAGCAGTTC 297
Query 325 TTTGCGCTTCCGACCGAAGAGAAACAGAAGTGCGCGAGAGAGATTGATAGTATCCAAGGA 384
||||||||||| |||||||||||||| |||||||||||||||| | || ||||||||||
Sbjct 298 TTTGCGCTTCCAACCGAAGAGAAACACAAGTGCGCGAGAGAGACAGGTAATATCCAAGGA 357
Query 385 TATGGTAACGACATGATTCTTTGGGATGATCAAGTTCTTGATTGGATCGACCGTTTGTAT 444
||||| ||||| |||||||| | ||| |||||||||||||||||||||||||||||| |
Sbjct 358 TATGGAAACGATATGATTCTGTCCGATAATCAAGTTCTTGATTGGATCGACCGTTTGTTT 417
Query 445 ATTACTACTTACCCTGAAGATCAA-AGACAACTTAATTTCTGGCCTGAAGTCCCACTTGG 503
| |||||||||||||||||| || | |||||| | ||||||||| ||||||| | ||
Sbjct 418 CTCACTACTTACCCTGAAGAT-AAGCGTCAACTTCAGTTCTGGCCTCAAGTCCCGGTCGG 476
Query 504 ATTCAGGGAAACTTTACATGAATACACAATGAAGCAACGGATAGTGATTGAGCAATTTTT 563
||||| |||||||||||||||||||| |||||||||||| ||||||||||| |||| ||
Sbjct 477 GTTCAGTGAAACTTTACATGAATACACGATGAAGCAACGGGTAGTGATTGAGAAATTCTT 536
Query 564 TAAGGCCATGGCTAGATCTTTGGAATTAGAAGAGAATAGTTTTCTAGACATGTATGGAGA 623
|||||| ||||||||||| |||||||| ||||||||| |||||||||| |||||||||||
Sbjct 537 TAAGGCTATGGCTAGATCATTGGAATTGGAAGAGAATTGTTTTCTAGAGATGTATGGAGA 596
Query 624 AAGTGCTACGTTGGATACTAGATTCAACATGTATCCACCATGTCCGAGCCCGGACAAGGT 683
|| ||||| || || | ||||||||| | | ||| |||||||| || || ||||||||
Sbjct 597 AAATGCTATAATGAATTCAAGATTCAACTTCTTTCCTCCATGTCCAAGGCCAGACAAGGT 656
Query 684 TATTGGTG-TTAAACCGCACGCTGATGGCTCGGCTATCACTCTTCTCTTACCCGACAAAG 742
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 TATTGG-GATTAAACCGCACGCTGATGGCTCGGCTATCACTCTTCTCTTACCCGACAAAG 715
Query 743 ATGTCGGAGGGCTTCAGTTCCAGAAAGATGGGAAGTGGTATAAAGCTCCTATAGTCCCTG 802
|||||| ||| |||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 716 ATGTCGAAGGACTTCAGTTCCTCAAAGATGGGAAGTGGTATAAAGCTCCAATAGTCCCTG 775
Query 803 ATACAATT-TTGATCAATGTTGGTGATCAAATGGAGATAATGAGCAATGGGATATACAAG 861
|||||||| || |||||| | || ||||| |||||||||||||| |||||||||||||||
Sbjct 776 ATACAATTCTT-ATCAATCTAGGAGATCAGATGGAGATAATGAGTAATGGGATATACAAG 834
Query 862 AGCCCGGTTCATAGAGTGGTGACTAACAGAGAAAAGGAAAGAATATCTGTGGCAACTTTT 921
|| |||||||||||||||||||| ||||||||||||||||| || ||||||||||| |||
Sbjct 835 AGTCCGGTTCATAGAGTGGTGACGAACAGAGAAAAGGAAAGGATCTCTGTGGCAACGTTT 894
Query 922 TGCATTCCAGGTGC-AGATAAAGAGATTCAGCCTGTGAATGAGCTTGTGTCTGAGGCAAG 980
|| |||| || || ||| |||||||||||||||| ||||| ||||||||||||||||||
Sbjct 895 TGTGTTCCGGG-GCCAGACAAAGAGATTCAGCCTGCGAATGGGCTTGTGTCTGAGGCAAG 953
Query 981 ACCAAGATTATATAAAACAGTTAAGAAGTATGTGGAGCTCTACTTCAAGTACTATCAACA 1040
||||||||| ||||||||| ||| ||||||| ||||||| ||| |||||||||||||||
Sbjct 954 ACCAAGATTGTATAAAACAATTACCAAGTATGCGGAGCTCCACTACAAGTACTATCAACA 1013
Query 1041 AGGCCGAAGACCTATTGAAGCTGCATTGATCT 1072
||| |||||| |||||||||||||||||||||
Sbjct 1014 AGGTCGAAGAACTATTGAAGCTGCATTGATCT 1045
> Ahg917070 jgi|Araly1|917070|Al_scaffold_0008_1821
Length=993
Score = 617 bits (334), Expect = 5e-176
Identities = 559/666 (84%), Gaps = 21/666 (3%)
Strand=Plus/Plus
Query 28 ATGGAGAAGCCAAAGTTCAAGACTGTCCAAGAGGTGGTTGCAGCTGGCGAAGGACTGCCG 87
||||| ||||||||||||||||||||||||||| || ||||||| || ||| ||| |||
Sbjct 1 ATGGAAAAGCCAAAGTTCAAGACTGTCCAAGAGCTGCTTGCAGCCGGAGAAAAACTACCG 60
Query 88 GAGAGATA--TCTCCACGCACCCACCGGAGACGGCGAA-GT--TCAACCTCTT-AACGCA 141
|| ||||| ||| ||| | || || || ||||| ||| || ||||||| || ||||
Sbjct 61 GAAAGATACCTCTGCAC-C-CCAACAGGCGACGGAGAAGGTGATCAACCT-TTCAACGTT 117
Query 142 GCGGTACCGGAGATGGATATTCCGGCCATCGATCTGAATCTTCTCCTCTCTTCTTCTGAA 201
|| | ||||| ||||| ||| || ||||||||| | |||||||||||||||||||||
Sbjct 118 TCGATGCCGGAAATGGAAATTATGGTCATCGATCTTAGTCTTCTCCTCTCTTCTTCTGAT 177
Query 202 G-CTGGTCAACAAGAGCTGAGTAAACTTCACTCGGC-ACTCTCTACATGGGGCGTTGTTC 259
| | |||| | ||||| |||||||||||||||| || | |||||||||||||||||||||
Sbjct 178 GAC-GGTCGAGAAGAGTTGAGTAAACTTCACTCAGCGA-TCTCTACATGGGGCGTTGTTC 235
Query 260 AGGTGATGAATCATGGAATTACAAAAGCGTTTCTTGACAAGATT-TACAAGCTAACCAAG 318
|||||||||||||||||||| || |||| ||||| ||||||||| | | ||||||| | |
Sbjct 236 AGGTGATGAATCATGGAATTTCAGAAGCCTTTCTCGACAAGATTCT-CGAGCTAACGA-G 293
Query 319 G-AGTTCTTTGCGCTTCCGACCGAAGAGAAACAGAAGTGCGCGAGAGAGATT-GATAGTA 376
| ||||||||| ||||||||||||||||||||| |||| ||| ||||||||| | ||||
Sbjct 294 GCAGTTCTTTGTGCTTCCGACCGAAGAGAAACATAAGTACGCAAGAGAGATTAG-TAGTT 352
Query 377 TCCAAGGATATGGTAACGACATGATTCTTTGGGATGATCAAGTTCTTGATTGGATCGACC 436
| ||||||| ||| |||||||||||||| | ||||||||||||||||| ||| ||||||
Sbjct 353 TTCAAGGATTTGGAAACGACATGATTCTGTCTGATGATCAAGTTCTTGACTGGGTCGACC 412
Query 437 GTTTGTATATTACTACTTACCCTGAAGATCAAAGACAACTTAATTTCTGGCCTGAAGTCC 496
| ||||| | | |||||| |||||||||||| |||| ||||| ||||||||| || |||
Sbjct 413 GCTTGTACCTCATTACTTATCCTGAAGATCAACGACAGCTTAAGTTCTGGCCTAAAATCC 472
Query 497 CACTTGGATTCAGGGAAACTTTACATGAATACACAATGAAGCAACGGATAGTGATTGAGC 556
|| |||||||||||||||||||||||||||||||||||||||| | ||||| |||||
Sbjct 473 CAAGCGGATTCAGGGAAACTTTACATGAATACACAATGAAGCAACAGCTAGTGGTTGAGA 532
Query 557 AATTTTTTAAGGCCATG-GCTAGATCTTTGGAATTAGAAGAGAATAGTTTTCTAGACATG 615
|||| || ||||| || |||||||| |||| || ||||| ||| | |||||||| |||
Sbjct 533 AATTCTTCAAGGC-ATTAGCTAGATCGTTGGGGTTGGAAGATAATTGCTTTCTAGAGATG 591
Query 616 TATGGAGAAAGTGCTACGTTGGATACTAGATTCAACATGTATCCACCATGTCCGAGCCCG 675
|||| |||| |||||||||||| || ||||||||||||||||| ||||||||||| |||
Sbjct 592 CATGGTGAAAATGCTACGTTGGAGACAAGATTCAACATGTATCCTCCATGTCCGAGGCCG 651
Query 676 GACAAG 681
||||||
Sbjct 652 GACAAG 657
Score = 322 bits (174), Expect = 4e-87
Identities = 289/343 (84%), Gaps = 14/343 (4%)
Strand=Plus/Plus
Query 739 AAAGATGTCGGA-GGGCTTCAGTTCCAGAAAGATGGGAAGTGGTATAAAGCTCCTATAGT 797
||| |||| ||| || |||||||||| |||||||||||||||||||||||| | || |
Sbjct 658 AAAAATGT-GGATGGACTTCAGTTCCTCAAAGATGGGAAGTGGTATAAAGCTTCAATCCT 716
Query 798 CCCTGATACAATTTTGATCAATGTTGGTGATCA-AATGGAGATAATGAGCAATGGGATAT 856
|||| |||||||| |||||||||| || ||| | |||||| ||||||||||||| ||||
Sbjct 717 CCCTCATACAATTCTGATCAATGTAGGAGAT-ACTATGGAGGTAATGAGCAATGGAATAT 775
Query 857 ACAAGAGCCCGGTTCATAGAGTGGTGACT-AACAGA-GAAAAGGAAAGAATATCTGTGGC 914
|||||||||||||||||||||||||| || |||| | ||||||| ||| ||||||||||
Sbjct 776 ACAAGAGCCCGGTTCATAGAGTGGTG-CTTAACA-ACGAAAAGGCAAGGATATCTGTGGT 833
Query 915 AAC-TTTT-TGCATTCCAGGTGCAGATAAAGAGATTCAGCCTGTGAA-TGAGCTTGTGTC 971
||| |||| || || | | || ||| ||||||||||| ||||| || ||||||||||||
Sbjct 834 AACGTTTTGTG-ATGCT-GATGAAGACAAAGAGATTCAACCTGT-AACTGAGCTTGTGTC 890
Query 972 TGAGGCAAGACCAAGATTATATAAAACAGTTAAGAAGTATGTGGAGCTCTACTTCAAGTA 1031
|||||| ||||||||||| || ||| |||||||||||| || | || || |||| | ||
Sbjct 891 TGAGGCTAGACCAAGATTGTACAAAGCAGTTAAGAAGTCTGAGAAGAACTTCTTCGATTA 950
Query 1032 CTATCAACAAGGCCGAAGACCTATTGAAGCTGCATTGATCTGA 1074
|||||||||||| |||||||| || ||||||||||| ||||||
Sbjct 951 CTATCAACAAGGTCGAAGACCGATCGAAGCTGCATTTATCTGA 993
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46243098321
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5