BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G20410.1
Length=1798
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488950 jgi|Araly1|488950|fgenesh2_kg.6__2084__AT5G20410.1 2529 0.0
Ahg931035 jgi|Araly1|931035|scaffold_303492.1 564 9e-160
> Ahg488950 jgi|Araly1|488950|fgenesh2_kg.6__2084__AT5G20410.1
Length=1772
Score = 2529 bits (1369), Expect = 0.0
Identities = 1561/1652 (94%), Gaps = 20/1652 (1%)
Strand=Plus/Plus
Query 1 GTCTTCTCTGTTTTTCTTCCATGATTCTCTCTTACAACATCAATCGTTCACCCAAACACC 60
||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||| ||
Sbjct 1 GTCTTCTCTGTTTGTCTTCCATGTTTCTCTCTTACAACATCAATCATTCACCCAAA-ACA 59
Query 61 CTTTCTTTCTCTGTCTCTTTCCTCGGAA-ATTTCTCCTTCTCCGGTGTCGAATCGCCGAG 119
|| || || ||||||||||||||||||| |||| ||||||||||||||| ||||||||
Sbjct 60 CTCTC-TT-TCTGTCTCTTTCCTCGGAAGATTT-TCCTTCTCCGGTGTCAAATCGCCG-T 115
Query 120 GGAAGGTGATTTTTCCGGGAAAGTCTCCGTTTTGTTTCACCTAATCATCTCAA--A---G 174
|||||||||||||||||||||||||||||||||||||| ||||| || |||| | |
Sbjct 116 GGAAGGTGATTTTTCCGGGAAAGTCTCCGTTTTGTTTCTCCTAAACAGATCAACGACTCG 175
Query 175 ACTCG--TCC-T-TTATAAATGGCGACGACGGTCATGGCCCTTGCAGAGAAAGTACTCGA 230
|||| ||| | || | ||||||||||||||| ||| |||| ||||||||||| |||||
Sbjct 176 TCTCGTCTCCTTCTTGTTAATGGCGACGACGGTTATGTCCCTAGCAGAGAAAGTGCTCGA 235
Query 231 AAGAGTTTACGGAACTTCCAAATCCGCCGTTTCCGTAACAAGCGGCGACGGCGAAAAGAC 290
|||||| |||||||||||||||||||||||||||||| || ||||||| ||||||||||
Sbjct 236 AAGAGTCTACGGAACTTCCAAATCCGCCGTTTCCGTAGCAGGCGGCGATAGCGAAAAGAC 295
Query 291 TCACCGTCATACCCATCATCACATTCACCGTATCAAAAGCTACGACGACATCGACGAGGA 350
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 296 TCACCGTCATACCCATCATCACATTCACCGTAGCAAAAGCTACGACGACAGCGACGAGGA 355
Query 351 TGAATCATCATTGGAGCTTATCCAGATCGGTGCTGAGAGGACTAAGAACGTCTTGATCCT 410
|||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 356 TGAATCATCAATGGAGCTTGTCCAGATCGGTGCTGAGAGGACAAAGAACGTCTTGATCCT 415
Query 411 CATGAGCGATACTGGTGGCGGTCACCGTGCTTCCGCTGAAGCCATTCGTGACGCTTTCAA 470
||||||||| || || || |||||||||||||| |||||||||||||| |||||||||||
Sbjct 416 CATGAGCGACACCGGAGGTGGTCACCGTGCTTCGGCTGAAGCCATTCGCGACGCTTTCAA 475
Query 471 GATCGAATTCGGAGACAAATATAGAGTAATTGTGAAGGATGTGTGGAAGGAATACACAGG 530
||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||
Sbjct 476 GATCGAATTCGGAGACAAATACAGAATAAGTGTGAAGGATGTGTGGAAGGAATACACAGG 535
Query 531 GTGGCCATTGAATGATATGGAGAGATCATATAAGTTCATGGTGAAGCATGTTCAGCTATG 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 GTGGCCATTGAATGATATGGAGAGATCATATAAGTTCATGGTGAAGCATGTTCAGCTATG 595
Query 591 GAAAGTTGCTTTTCACAGCACATCACCCAAATGGATCCACTCTTGTTATCTAGCAGCCAT 650
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 596 GAAAGTTGCTTTTCACAGCACATCTCCCAAATGGATCCACTCTTGTTATCTAGCAGCCAT 655
Query 651 TGCTGCTTATTACGCTAAGGAAGTAGAGGCTGGTTTAATGGAGTATAAGCCGGAGATAAT 710
||| || ||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 656 TGCCGCCTATTACGCTAAGGAAGTAGAGGCGGGTTTGATGGAGTATAAGCCGGAGATAAT 715
Query 711 CATTAGTGTTCATCCTTTAATGCAACATATTCCATTGTGGGTTCTTAAATGGCAAGAGCT 770
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 716 CATTAGTGTTCATCCTTTGATGCAACATATTCCATTGTGGGTTCTCAAATGGCAAGAGCT 775
Query 771 ACA-AAAGAGAGTCCTTTTTGTTACTGTCATTACTGATCTCAACACTTGTCATCCTACTT 829
||| ||| ||||| || ||||| || ||||||||||||||||||||||||||||||||||
Sbjct 776 ACAGAAA-AGAGTTCTCTTTGTCACCGTCATTACTGATCTCAACACTTGTCATCCTACTT 834
Query 830 GGTTTCATCCGGGGGTGAATAGGTGCTATTGCCCGTCTCAAGAAGTGGCGAAAAGGGCGT 889
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 835 GGTTTCATCCGGGGGTGAATAGGTGCTATTGTCCGTCTCAAGAAGTGGCGAAAAGGGCGT 894
Query 890 TGTTTGATGGGCTTGATGAGTCTCAAGTCCGTGTCTTTGGTTTACCTGTGAGGCCATCTT 949
|||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 895 TGTTCGATGGGCTCGATGAGTCTCAAGTCCGTGTCTTTGGTTTACCTGTCAGGCCATCTT 954
Query 950 TTGCACGAGCGGTTTTGGTGAAGGATGATCTAAGAAAGGAGCTTGAGATGGATCAAGATC 1009
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 TTGCACGAGCGGTTTTGGTGAAGGATGATCTAAGAAAGGAGCTTGAGATGGATCAAGATC 1014
Query 1010 TTCGTGCGGTTCTACTGATGGGAGGAGGGGAAGGTATGGGTCCTGTGAAAGAAACAGCTA 1069
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1015 TTCGTGCGGTTCTACTGATGGGAGGAGGGGAAGGTATGGGTCCTGTGAAAGAAACAGCCA 1074
Query 1070 AAGCTCTTGAGGAATTTTTGTATGATAAAGAGAACAGGAAGCCTATTGGGCAAATGGTTG 1129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 AAGCTCTTGAGGAATTTTTGTATGATAAAGAGAACAGGAAGCCTATTGGGCAAATGGTTG 1134
Query 1130 TTATCTGTGGACGTAACAAGAAATTGGCATCTGCATTAGAAGCCATTGACTGGAAGATTC 1189
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1135 TTATCTGTGGACGTAACAAGAAATTGGCATCTGCGTTAGAAGCCATTGAATGGAAGATTC 1194
Query 1190 CTGTTAAGGTTCGAGGATTTGAGACTCAAATGGAGAAATGGATGGGAGCTTGTGACTGCA 1249
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1195 CTGTTAAGGTTCGAGGATTCGAGACTCAGATGGAGAAATGGATGGGAGCTTGTGACTGCA 1254
Query 1250 TCATCACAAAAGCTGGACCAGGAACAATCGCTGAATCGCTGATTC-GATCACTTCCTATC 1308
||||||||||||||||||| |||||||||||||||||| |||| | ||||||| || |||
Sbjct 1255 TCATCACAAAAGCTGGACCGGGAACAATCGCTGAATCGTTGAT-CAGATCACTCCCAATC 1313
Query 1309 ATCCTCAACGATTACATTCCTGGACAGGAGAAAGGGAATGTGCCGTATGTAGTGGAGAAT 1368
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1314 ATCCTCAACGATTACATTCCCGGACAGGAGAAAGGGAATGTGCCATATGTAGTGGAGAAT 1373
Query 1369 GGTGCAGGAGTATTCACAAGAAGTCCCAAAGAGACAGCTAGAATCGTTGGGGAATGGTTT 1428
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1374 GGTGCAGGAGTGTTCACAAGAAGTCCCAAAGAGACAGCTAGAATCGTCGGGGAATGGTTT 1433
Query 1429 AGCACAAAGACAGATGAGTTGGAACAAACTTCAGACAATGCACGTAAACTAGCTCAGCCT 1488
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1434 AGCACAAAGACAGATGAGCTGGAACAAACTTCAGACAATGCACGTAAACTAGCTCAGCCT 1493
Query 1489 GAGGCAGTCTTCGACATTGTCAAAGACATTGATGAGCTCTCAGAGCAACGAGGTCCTCTT 1548
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1494 GAGGCAGTCTTCGACATTGTCAAAGACATTGATGAGCTCTCAGAACAACGAGGTCCTCTT 1553
Query 1549 GCTAGCGTCTCTTACAATCTTACCTCTTCTTTTGCCAGTTTAGTTTGATGTCCCATGT-T 1607
|||| |||||||||| |||||||||||||||||||||||||||||||||||| |||| |
Sbjct 1554 GCTAATGTCTCTTACACTCTTACCTCTTCTTTTGCCAGTTTAGTTTGATGTCCGATGTCT 1613
Query 1608 TATATTAACATGTCTCCCTTAGTAGTTCTTTT 1639
||||||||||||||||||||||||||||||||
Sbjct 1614 TATATTAACATGTCTCCCTTAGTAGTTCTTTT 1645
Score = 167 bits (90), Expect = 3e-40
Identities = 117/128 (91%), Gaps = 9/128 (7%)
Strand=Plus/Plus
Query 1671 TAATTTGTTTATTGATTGAAGTTGTATGTATTATTTTTAAGCAAAAGGTTCATGATGTCT 1730
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1645 TAATTTGTTTATTGATTGAAGTTGTATGTATTATTTTCAAGCAAAAGGTTCATGATGTTT 1704
Query 1731 TTGCATTATTGTTAGCCATT--AACAAT---A---T-CAACAAGAGATTCTTGTTCATAT 1781
|||||||||||||||||||| |||||| | | |||||||||||||||||||||||
Sbjct 1705 TTGCATTATTGTTAGCCATTGCAACAATTTTAAGATTCAACAAGAGATTCTTGTTCATAT 1764
Query 1782 AGAATCAC 1789
||||||||
Sbjct 1765 AGAATCAC 1772
> Ahg931035 jgi|Araly1|931035|scaffold_303492.1
Length=1441
Score = 564 bits (305), Expect = 9e-160
Identities = 894/1173 (76%), Gaps = 62/1173 (5%)
Strand=Plus/Plus
Query 373 CAGATCGGTGCTGAGAGGACT-AAGAAC-G-TCTTGATCCTCATGAGCGATACTGGTGGC 429
||||| || || ||||||| | || ||| | |||| || |||||||| || || || |||
Sbjct 216 CAGATGGGAGCAGAGAGGA-TCAA-AACTGTTCTT-ATTCTCATGAGTGACACCGGCGGC 272
Query 430 GGTCACCGTGCTTCCGCTGAAGCCATTCGTGACGCTTTCAAGATCGAATTCGGAGACAAA 489
|| |||||||||||||| || ||||| ||||||||||||||||||||||||||||| |
Sbjct 273 GGCCACCGTGCTTCCGCCGAGGCCATCCGTGACGCTTTCAAGATCGAATTCGGAGATGAC 332
Query 490 TATAG-AGTAATTGTGAAGGATGTGTGGAAGGAATACACAGGGTGGCCATTGAATGATAT 548
||| | | |||| | || ||||| ||||| |||||||| || ||||||||||| || ||
Sbjct 333 TATCGGA-TAATCATAAAAGATGTATGGAAAGAATACACTGGATGGCCATTGAACGACAT 391
Query 549 GGAGAGATCA-TATAAGTTCATGGTGAAGCATGTTCAG-CTATGGAAAGTTGCTTTTCAC 606
||||||| || || ||||||||||| || |||||| | || ||| ||| || |||||
Sbjct 392 GGAGAGA-CAGTACAAGTTCATGGTAAAACATGTTG-GTCTTTGGTCAGTCGCGTTTCAT 449
Query 607 AGCACATCACCCAAATGGATCCACTCTTGTTATCTA-GCAGC-CATTGCTGCTTATTACG 664
| || || ||||||||||| ||| |||||||| | || | | || |||||||| |
Sbjct 450 GGTACCTCTCCCAAATGGATACACAAAAGTTATCTAAGT-GCTC-TCGCCGCTTATTATG 507
Query 665 CTAAGGAAGTAGAGGCTGGTTTAATGGAGTATAAGCCGGAGATAATCATTAGTGTTCATC 724
| || ||| |||||||||||||||||||||| || || || || || |||| || || |
Sbjct 508 CCAAAGAAATAGAGGCTGGTTTAATGGAGTACAAACCAGATATCATTGTTAGCGTACACC 567
Query 725 CTTTAATGCAACATATTCCATTGTGGGTTCTTAAATGGCAAG-AGCTACAAAAGAGAGTC 783
|||| |||||||| || ||||||||||| | |||||||||| | || || |||| ||||
Sbjct 568 CTTTGATGCAACACATACCATTGTGGGTAATGAAATGGCAAGGA-CTTCATAAGAAAGTC 626
Query 784 CTTTTTGTTACTGTCATTACTGATCTCAACACTTGTCATCC-TACTTGGTTTCATCCGGG 842
|||| || || ||||| |||||||| || ||||| || || ||| ||||| |||| ||
Sbjct 627 ATTTTCGTGACGGTCATAACTGATCTAAATACTTGCCA-CCGTACATGGTTCCATCATGG 685
Query 843 GGTGAATAGGTGCTATTGCCCGTCTCAAGAAGTGGCGAAA-AGGGCGTT-GTTTGATGGG 900
|| | || || ||||| ||||| |||| || || ||| || || || || || ||
Sbjct 686 AGTCAGCAGATGTTATTGTCCGTCGAAAGAGGTTGC-AAAGAGAGCATTAGTA-GACGGC 743
Query 901 CTTGATGAGTCTCAAGTCCGTGTCTTTGGTTTACCTGTGAGGCCATCTTTTGCACG-AGC 959
|||||||| |||||| | ||||||||||| ||||| || | |||||||| | || | |
Sbjct 744 CTTGATGACTCTCAAATTCGTGTCTTTGGCTTACCCGTCCGCCCATCTTTCCCTCGTA-C 802
Query 960 GGTTTTGGTG-AAGGATGATCTAAGAA-AGGAGCTTGAGATGGA-TCAAGATCTT-CGTG 1015
|| | | |||||||| ||||| | || ||||||| || || | || || || | ||
Sbjct 803 AATTATC-TACAAGGATGAACTAAGGAGAG-AGCTTGAAATAGACTTAA-AT-TTACCTG 858
Query 1016 CGGTTCTACTGATGGGAGGAGGGGAAGGTATGGGTCCTGTG-AAAGAAACAGCTAAAGCT 1074
|||||||| | |||||||| || ||||| |||||||| || ||| |||| ||| |||
Sbjct 859 CGGTTCTATTAATGGGAGGCGGTGAAGGAATGGGTCCGGTTCAAA-AAACTGCTCTAGCC 917
Query 1075 CTTG-AGGAATT-TTTGTATGA-TA-AAGAGAACAGGAAGCCTATTGGGCAAATGGTTGT 1130
|||| || | | ||| || | | || |||| || || || || || ||| || ||||
Sbjct 918 CTTGGAG-A-TGCTTTATACAACTCTAA-AGAA-AGAAATCCAATAGGACAATTGATTGT 973
Query 1131 TATCTGTGGACGTAACAA-GAAATTGGCATCTGCATTAGAAG-CC-ATTGACTGGAAGAT 1187
|| || || || ||||| | ||| | || ||||||| | || || || ||||||||
Sbjct 974 CATATGCGGCCGGAACAAAGTCCTTG-CTTCAGCATTAGG-GTCCCAT-GAATGGAAGAT 1030
Query 1188 TCCTGTTAAGGTTCGAGGATTTGAGACTCAAATGGAGAAATGGATGGGAGCTTGTGACTG 1247
||| || |||||||| || ||||| || |||||||| |||||||||||||||||||| ||
Sbjct 1031 TCCAGTCAAGGTTCGTGGGTTTGAAACACAAATGGAAAAATGGATGGGAGCTTGTGATTG 1090
Query 1248 CATCATCACAAAAGCTGGACCAGGAACAATCGCTGAATCGCTGATTCGATCA-CTTCCTA 1306
||||||||||| || || ||||| || || || ||| | ||||| | | || || |
Sbjct 1091 TATCATCACAAAGGCCGGTCCAGGTACGATTGCAGAAGCATTGATTTG-TGGTCTCCCAA 1149
Query 1307 TCATCCTCAACGATTACATTCCTGGACAGGAGAAAGGGAATGTGCCGTATGTAGTGGAGA 1366
| |||||||| || || |||||||||||||| ||||| |||||||| ||||| ||||| |
Sbjct 1150 TTATCCTCAATGACTATATTCCTGGACAGGAAAAAGGCAATGTGCCTTATGTTGTGGACA 1209
Query 1367 ATGGTGCAGGAGTATTCACAAGAAGTCCCAAAGAGACAGCTAGAATCGTTGGGGAAT-GG 1425
|||| || ||||| ||||| ||||||||||||| || || | ||| || || ||| ||
Sbjct 1210 ATGGAGCTGGAGTTTTCACCCGAAGTCCCAAAGAAACTGCGAAAATTGT-GGCTAATTGG 1268
Query 1426 TTTAGCA-CAA-AGACAGATGAGTTGGAACAAACT-TCAGACAATGCACGTAAACTAG-C 1481
||||||| ||| | | ||| || | || ||| | ||||| ||||| | |||| | | |
Sbjct 1269 TTTAGCAACAATA-A-AGAGGAACTA-AAGAAAATGTCAGAGAATGCTC-TAAAGTTGGC 1324
Query 1482 TCAGCCTGAGGCAGTCTTCGACATTGTCAAAGA 1514
|| |||||||| || |||||||| || |||||
Sbjct 1325 CCAACCTGAGGCCGTGTTCGACATCGTGAAAGA 1357
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67495914140
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5