BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G20440.1

Length=651
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg893979 jgi|Araly1|893979|Al_scaffold_0006_1975                    617    2e-176


> Ahg893979 jgi|Araly1|893979|Al_scaffold_0006_1975
Length=468

 Score =  617 bits (334),  Expect = 2e-176
 Identities = 421/461 (91%), Gaps = 13/461 (3%)
 Strand=Plus/Plus

Query  181  ATGAACACTGTAGATTTCTTCAACCAAATAAGCCTTTTGTATGCTACTCTTGAAGAGTTC  240
            ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGAACACTGTAGATTTCTACAAACAAATAAGCCTTTTGTATGCTACTCTTGAAGAGTTC  60

Query  241  TGCACACAGACCACTTGTCCAGTTATGAATGCTGGAAGATATGAGTATAGATGGGCAGAT  300
            |||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   TGCACACCCACCACTTGCCCAGTTATGAATGCTGGAAGATATGAGTATAGATGGGCAGAT  120

Query  301  GGAACTA-CTATAACTA-AGCCAAAAACGGTTTCAGCCCCTAAATATGTTGAGTATCTCA  358
            |||| || || || ||  |||| |||| ||||||||||||| |||||||||||| |||||
Sbjct  121  GGAA-TAACTGTA-CTTGAGCCTAAAATGGTTTCAGCCCCTGAATATGTTGAGTGTCTCA  178

Query  359  TTGA-TTGGGTTGAAACTGAGATCGATAACGAAGCCATCTTCCCGAAAAACCCTGGAGAA  417
            | || |||| |||||||| ||||||||||||||  |||||| |||||||| |||||||||
Sbjct  179  T-GAATTGGATTGAAACTCAGATCGATAACGAAATCATCTTTCCGAAAAATCCTGGAGAA  237

Query  418  CCATTCCCTCCAAACTTTGAGGATTTCGTGAAGCGGATTTTGAGAAAGTTGTTTCGTGTC  477
            ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  238  CCATTCCCTTCAAACTTTGAGGATTTCGTGAAGCGGATTTTGAGAAAGGTGTTTCGTGTC  297

Query  478  TATGCACACATCTATTATTCTCACTTTCATGA-GATTGTGGCTCTCAACGAACAAGCTCA  536
            ||||||||||||||||||||||||||| || | ||||||| ||||||| ||||| |||||
Sbjct  298  TATGCACACATCTATTATTCTCACTTT-ATTAAGATTGTGACTCTCAATGAACATGCTCA  356

Query  537  TCTCAACACTTGTTTCAAGCATTTTCTTCTATTCGTATCTGAGTTCCAGTTGGTTGATAA  596
            |||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct  357  TCTCAACACTTGCTTCAAGCATTTTCTTCTCTTTGTATCTGAGTTCCAGTTGGTTGATAA  416

Query  597  AGAAAAAGAGATGGCTCCTATTAAA-AGTCTAGTGGAAACT  636
            ||||   |||||||||||||||||| | ||| |||||||||
Sbjct  417  AGAA---GAGATGGCTCCTATTAAAGA-TCTCGTGGAAACT  453



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23864946042


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5