BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G20480.1
Length=3321
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488953 jgi|Araly1|488953|fgenesh2_kg.6__2087__AT5G20480.1 4940 0.0
Ahg347817 jgi|Araly1|347817|fgenesh1_pg.C_scaffold_5001209 464 2e-129
Ahg937453 jgi|Araly1|937453|scaffold_501644.1 424 3e-117
Ahg937452 jgi|Araly1|937452|scaffold_501643.1 411 2e-113
> Ahg488953 jgi|Araly1|488953|fgenesh2_kg.6__2087__AT5G20480.1
Length=3299
Score = 4940 bits (2675), Expect = 0.0
Identities = 3119/3330 (94%), Gaps = 44/3330 (1%)
Strand=Plus/Plus
Query 1 ATCTTTTTATAATCGACATGAAGCTGTCCTTTT-CACTTGTTTTCAATGCTCTCACGTTG 59
|||||||||||| |||||||||||||| ||||| |||||| |||||||||||||| ||||
Sbjct 1 ATCTTTTTATAAGCGACATGAAGCTGT-CTTTTCCACTTGCTTTCAATGCTCTCATGTTG 59
Query 60 CTTCTTCAAG-TT--TGC---ATCTTTGCTCAAGCCAGGTTTTCTAATGAGACTGATATG 113
|||||||||| || ||| |||||||||||||||||||||||||||||||||| |||
Sbjct 60 CTTCTTCAAGTTTGCTGCGTGGTCTTTGCTCAAGCCAGGTTTTCTAATGAGACTGACATG 119
Query 114 CAAGCTTTGCTTGAGTTCAAGTCTCAAGTTTCTGAAAACAACAAGAGAGAGGTCTTGGCT 173
||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 120 AAAGTTTTGCTTGAGTTCAAGTCTCAAGTTTCTG--AA-AACAAGAGAGAGGTCTTGGCC 176
Query 174 TCATGGAATCACTCCTCCCCATTTTGTAATTGGATTGGAGTCACATGTGGCCGCAGG-AG 232
||||||||||||||||||||||| || |||||||||||||||| ||||||||||||| |
Sbjct 177 TCATGGAATCACTCCTCCCCATTATGCAATTGGATTGGAGTCATATGTGGCCGCAGGCA- 235
Query 233 AGAAAGAGTTATAAGTTTGAACCTTGGAGGATTCAAGTTAACCGGTGTGATCTCACCCTC 292
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 236 AGAAAGAGTTATAAGTCTGAACCTCGGAGGATTCAAGTTAACCGGTGTGATCTCACCCTC 295
Query 293 CATTGGTAATCTCTCCTTTCTTAGATTACTTAATCTTGCAGACAACTCTTTTGGAAGTAC 352
||||||||||||||||||||| || || |||||||||| |||||||||||||||||||||
Sbjct 296 CATTGGTAATCTCTCCTTTCTCAGGTTTCTTAATCTTGGAGACAACTCTTTTGGAAGTAC 355
Query 353 CATCCCTCAAAAGGTGGGAAGGCTATTTAGGCTTCAGTACTTGAACATGAGCTATAATCT 412
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 356 CATCCCTCAAGAGGTGGGAATGCTATTTAGGCTTCAGTACTTGAACATGAGCTATAATCT 415
Query 413 TCTCGAAGGAAGGATTCCGTCTAGTCTTTCTAACTGCTCTAGACTGTCGACCGTTGATTT 472
|||| |||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||
Sbjct 416 TCTCCAAGGAAGGATTCCGCCTAGTCTTTCTAATTGCTCTAGACTGTCGACTGTTGATTT 475
Query 473 ATCGTCAAACCATCTTGGACATGGTGTTCCTTCAGAACTAGGTTCACTTTCTAAGCTTGC 532
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 476 ATCGTCAAACCAGCTTGGACATGGCGTTCCTTCAGAACTAGGTTCACTTTCTAAGCTGGC 535
Query 533 CATTCTGGATCTTAGCAAAAACAACCTTACTGGAAATTTTCCTGCATCTTTAGGAAACTT 592
||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 536 CATTCTGGATCTTAGTAAAAACAACCTTACAGGAAATTTTCCTGCATCTTTTGGAAACTT 595
Query 593 GACGTCACTTCAGAAGCTTGACTTTGCATATAACCAGATGAGAGGTGAGATTCCAGACGA 652
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 596 GACGTCACTCCAGAAGCTTGACTTTGCATATAACCAGATGGGAGGTGAGATTCCAGACGA 655
Query 653 AGTAGCTAGATTGACTCAAATGGTGTTTTTCCAAATAGCACTGAATAGTTTTTCAGGTGG 712
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 656 AGTAGCTAGATTGACTCATATGGTGTTTTTTCAAATAGCACTGAATAGTTTTTCAGGTGG 715
Query 713 TTTTCCTCCTGCATTGTACAACATCTCCTCTCTTGAGTCTCTATCTCTAGCTGACAATAG 772
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 716 TTTTCCTCCTGCATTGTACAACATCTCCTCTCTTGAGTTTCTATCTCTAGCTGACAATAG 775
Query 773 CTTTTCGGGTAATCTTAGGGCTGATTTTGGTTATCTTCTACCAAATCTAAGAAGACTTCT 832
|||||||||||| |||||||||||||||||| |||||||||||| ||||||| | |||||
Sbjct 776 CTTTTCGGGTAACCTTAGGGCTGATTTTGGTGATCTTCTACCAAGTCTAAGATGGCTTCT 835
Query 833 TTTGGGAACAAATCAGTTCACTGGAGCTATTCCCAAAACACTTGCCAATATCTCAAGCCT 892
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 836 TTTGGGATCAAATCAGTTCACTGGAGCTATTCCCATAACACTTGCCAATATCTCAAGCCT 895
Query 893 TGAAAGGTTTGATATCTCATCTAATTACCTGTCTGGTAGTATCCCTTTGAGCTTTGGAAA 952
|||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 896 TGAATGGTTTGATATCTCATCTAATTACCTGACTGGAAGTATCCCTTTGAGCTTTGGAAA 955
Query 953 GTTACGTAATCTGTGGTGGTTAGGGATTCGTAATAACTCTCTTGGAAATAACTCGTCCAG 1012
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 956 GTTACGTAATCTGTGGTGGTTAGGAATTCGTAATAACTCTCTTGGATATAACTCGTCCAG 1015
Query 1013 TGGTCTTGAATTTATTGGGGCTGTGGCGAACTGCACTCAATTAGAGTACTTAGATGTTGG 1072
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 1016 TGGTCTTGAATTTATTGGTGCTTTGGCGAACTGCACTCAATTAGAGTACTTAGATGTTGG 1075
Query 1073 TTACAATAGACTTGGAGGTGAGCTTCCTGCTTCTATAGCCAATCTGTCCACTACATTGAC 1132
|||||||||||||||||||||||| ||||| || || |||||||||||||||| ||||||
Sbjct 1076 TTACAATAGACTTGGAGGTGAGCTGCCTGCCTCCATGGCCAATCTGTCCACTAAATTGAC 1135
Query 1133 TAGTCTGTTCCTTGGACAAAATCTTATCTCTGGAACCATTCCTCATGACATCGGGAATCT 1192
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 1136 TAGTCTGTTCCTTGGACAAAATCTTATCTCTGGAACCATTCCTTACGACATCGGGAATCT 1195
Query 1193 TGTAAGCCTGCAAGAACTCAGCTTAGAAACAAATATGTTGAGTGGAGAACTTCCCGTCTC 1252
| ||||||||||||||||||| || |||||||||| |||| |||||||||||| |||||
Sbjct 1196 TATAAGCCTGCAAGAACTCAGTTTGGAAACAAATAAGTTGTCTGGAGAACTTCCAGTCTC 1255
Query 1253 TTTCGGGAAGCTTTTGAACTTGCAGGTTGTGGATCTGTATTCAAATGCAATATCGGGGGA 1312
|||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||
Sbjct 1256 TTTCGGGAAGCTTTTGAATTTGCAGGTGGTGGATCTCTATTCAAATGCAATATCGGGGGA 1315
Query 1313 AATACCATCTTATTTTGGCAACATGACTCGGTTGCAGAAGCTCCATTTGAATAGCAATAG 1372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 AATACCATCTTATTTTGGCAACATGACTCGGTTGCAGAAGCTCCATTTGAATAGCAATAG 1375
Query 1373 TTTCCACGGAAGAATCCCTCAGAGTCTTGGACGTTGTCGATACTTGCTAGACCTGTGGAT 1432
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1376 TTTCCACGGAAGAATCCCTCAGAGTCTTGGACGTTGTCAATACTTGCTAGACCTGTGGAT 1435
Query 1433 GGATACAAATAGGTTGAATGGGACTATACCTCAGGAAATACTGCAAATTCCATCCCTCGC 1492
||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 1436 TGATACAAATAGGTTGAATGGGACTATACCTCGGGAAATACTGCAAATTCCGTCCCTCGC 1495
Query 1493 TTACATAGATTTGTCAAACAATTTCTTGACAGGCCATTTTCCAGAAGAAGTTGGAAAGTT 1552
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1496 TTACATAGATTTGTCAAACAATTTCTTGACCGGCCATTTTCCAGAAGAAGTTGGAAAGTT 1555
Query 1553 AGAACTTCTTGTTGGACTAGGTGCTTCGTACAACAAATTATCAGGAAAGATGCCACAAGC 1612
||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 1556 GGAACTTCTTGTTGGACTAGGTGCTTCGTACAACAAATTATCAGGACAGATCCCACAAGC 1615
Query 1613 TATAGGGGGTTGTCTTTCGATGGAATTTCTCTT-TATGCAAGGAAATTCGTTTGACGGAG 1671
||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1616 TATAGGGGGTTGTCTCTCGATGGAATTTCT-TTATATGCAAGGAAATTCGTTTGACGGAG 1674
Query 1672 CCATTCCAGATATAAGCCGGTTGGTAAGCCTAAAGAATGTTGACTTCTCCAACAACAATC 1731
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1675 CCATTCCAGATATAAGTCGGTTGGTAAGCCTAACGAATGTTGACTTCTCCAACAACAATC 1734
Query 1732 TCTCTGGCCGGATACCTCGATATCTGGCCAGTCTTCCTTCGCTGCGAAATCTGAATCTTT 1791
|||||||||||||||||||||||||||||| ||| |||| | ||||||||||||||||||
Sbjct 1735 TCTCTGGCCGGATACCTCGATATCTGGCCAATCTACCTTTGTTGCGAAATCTGAATCTTT 1794
Query 1792 CTATGAACAAGTTTGAGGGAAGGGTGCCAACAACAGGAGTGTTTCGAAATGCTACAGCAG 1851
|||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1795 CTATGAACAATTTTGAGGGAAGCGTGCCAACAACAGGAGTGTTCCGAAATGCTACAGCAG 1854
Query 1852 TTTCTGTTTTTGGTAACACAAATATTTGCGGAGGCGTCCGAGAAATGCAACTAAAGCCAT 1911
|||||||||||||||||| |||||| ||||||||| || |||||||||||||||||||||
Sbjct 1855 TTTCTGTTTTTGGTAACAAAAATATATGCGGAGGCATCAGAGAAATGCAACTAAAGCCAT 1914
Query 1912 GCATTGTACAGGCATCTCCAAGGAAGAGAAAGCCTCTGTCAGTTAGAAAGAAAGTTGTCA 1971
|||||||| | |||||||||||||||||||||||| | ||| |||||||||||||| |||
Sbjct 1915 GCATTGTAGAAGCATCTCCAAGGAAGAGAAAGCCTTTCTCACTTAGAAAGAAAGTTTTCA 1974
Query 1972 GTGGTATTTGTATAGGTATAGCTTCGCTTTTGTTAATCATAATTGTGGCTTCTCTGTGTT 2031
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1975 GTGGTATTGGTATAGGTATAGCTTCGCTTTTGTTAATCATAATTGTGGCTTCTCTGTGTT 2034
Query 2032 GGTTCATGAAGAGGAAAAAGAAAAACAATGCCAGTGATGGTAACCCATCTGATTCTACTA 2091
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2035 GGTTCATGAAGAGGAGAAAGAAGAACAATGCCAGTGATGGTAACCCATCTGATTCTACTA 2094
Query 2092 CTTTGGGGATGTTCCATGAGAAGGTAAGTTATGAAGAGCTTCATAGTGCAACAAGTCGCT 2151
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 2095 CTTTGGGGATGTTCCATGAGAAGGTAAGTTATGATGAGCTTCATAGTGCAACAAGTGGCT 2154
Query 2152 TCTCTTCAACCAATTTGATTGGTTCAGGCAATTTCGGTAATGTGTTTAAAGGATTGCTTG 2211
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2155 TCTCTTCAACCAATCTGATTGGGTCAGGCAATTTCGGTAATGTGTTTAAAGGATTGCTTG 2214
Query 2212 GCCCTGAGAATAAACTCGTCGCGGTTAAAGTTTTGAACCTCCTAAAGCATGGAGCGACGA 2271
||| |||||||| |||||| |||||||||||| |||||||||||||||||||||| || |
Sbjct 2215 GCCATGAGAATAGACTCGTTGCGGTTAAAGTTCTGAACCTCCTAAAGCATGGAGCAACTA 2274
Query 2272 AAAGCTTTATGGCGGAATGTGAAACCTTCAAGGGTATACGACATCGTAACCTTGTAAAAC 2331
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2275 AAAGCTTTATGTCGGAATGTGAAACCTTCAAGGGTATACGACATCGTAACCTTGTAAAAC 2334
Query 2332 TGATAACGGTTTGTTCAAGCCTTGATTCCGAGGGAAATGATTTCAGAGCTCTGGTCTATG 2391
|||||||||| |||||||| || ||||||||||||||||| |||||||||||||||||||
Sbjct 2335 TGATAACGGTCTGTTCAAGTCTCGATTCCGAGGGAAATGAGTTCAGAGCTCTGGTCTATG 2394
Query 2392 AGTTCATGCCAAAAGGAAGTCTGGATATGTGGCTGCAGCTAGAAGATCTGGAAAGGGTAA 2451
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||
Sbjct 2395 AGTTCATGCCAAAAGGAAGTCTGGATATGTGGCTGCAGCCAGAAGATCAGGAAAGGGCAA 2454
Query 2452 ACGATCACTCGAGATCTTTAACACCCGCAGAGAAACTCAACATAGCAATAGATGTGGCTT 2511
|||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2455 ACGAGCACTCGAGATCCTTAACACTTGCAGAGAAACTCAACATAGCAATAGATGTGGCTT 2514
Query 2512 CAGCTTTGGAGTATCTGCACGTTCATTGTCATGACCCTGTAGCTCACTGTGATATTAAGC 2571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2515 CAGCTTTGGAGTATCTGCACGTTCATTGTCATGACCCTGTAGCTCACTGTGATATTAAGC 2574
Query 2572 CAAGCAACATTCTTCTAGACGATGATCTGACTGCTCATGTTAGTGACTTTGGTTTGGCTC 2631
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2575 CAAGCAACGTTCTTCTAGACGATGATCTGACTGCTCATGTTAGTGACTTTGGTTTGGCTC 2634
Query 2632 AGCTCCTCTATAAATACGATCGAGAATCCTTTCTAAACCAGTTTAGTTCTGCTGGTGTCA 2691
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2635 GGCTCCTCTATAAATACGATCGAGAATCCTTTCTAAACCAGTTTAGTTCTGCCGGTGTCA 2694
Query 2692 GAGGCACCATTGGCTATGCCGCGCCAGAGTATGGAATGGGAGGCCAACCATCAATACAAG 2751
||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||
Sbjct 2695 GAGGCACCATTGGCTATACCGCACCAGAATATGGAATGGGAGGCCAACCATCAATACAAG 2754
Query 2752 GAGATGTGTACAGCTTCGGAATTCTACTTTTGGAGATGTTTAGTGGAAAGAAACCAACAG 2811
|||||||||||||||| ||||||||||||||||||||||| | ||||||||||| ||||
Sbjct 2755 GAGATGTGTACAGCTTTGGAATTCTACTTTTGGAGATGTTCACAGGAAAGAAACCGACAG 2814
Query 2812 ATGAATCATTTGCAGGCGATTATAACCTCCACAGCTACACAAAGTCTATATTATCGGGTT 2871
||| |||||||||||||||| ||||||||| |||||||| |||| |||| || ||||
Sbjct 2815 GCGAACCATTTGCAGGCGATTACAACCTCCACTGCTACACACAGTCGGTATTGTCTGGTT 2874
Query 2872 GCACGAGCAGTGGAGGCAGCAACGCCATTGATGAGGGGTTGAGACTGGTTTTGCAGGTGG 2931
||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2875 GCACGAGTAGTGGAGGCAGCAACGCCATTGATGAATGGTTGAGACTGGTTTTGCAGGTGG 2934
Query 2932 GGATAAAGTGTTCTGAAGAATATCCGAGGGATAGGATGAGAACGGATGAAGCAGTACGAG 2991
||||||||||||||||||||||||| |||||||||||||||| | ||||| |||||||
Sbjct 2935 GGATAAAGTGTTCTGAAGAATATCCAAGGGATAGGATGAGAATTGCTGAAGTGGTACGAG 2994
Query 2992 AATTAATCTCAATAAGATCTAAGTTCTTCAGTTCCAAGACGACTATTACAGAGAGTCCTC 3051
||||||||||||| ||| |||| ||||||||| |||||||||||||||||||||||||||
Sbjct 2995 AATTAATCTCAATCAGAACTAAATTCTTCAGTGCCAAGACGACTATTACAGAGAGTCCTC 3054
Query 3052 GAGATGCTCCGCAAAGTTCTCCTCAGGAATGGATGTTAAATACGGACATGCATACTATGT 3111
|||||||||||||||||||||||||||||||||||||| || ||||| |||||||| |||
Sbjct 3055 GAGATGCTCCGCAAAGTTCTCCTCAGGAATGGATGTTAGATGCGGACTTGCATACTGTGT 3114
Query 3112 AGACCCTTCTCAACTACTTATG--GGG-ACACAGTAAAAGTGTATTTGCGTGTGCATCAT 3168
|||||||||||||||||||| | ||| |||||||||||| || || | |
Sbjct 3115 AGACCCTTCTCAACTACTTAGGATGGGCACACAGTAAAAG---AT---CG-----A--A- 3160
Query 3169 CGAAACAGAACAAATGTTGGGAGGAGGAGAGACTACTAGTTATA-ATAAGAGAATAAATT 3227
| ||||||| ||||||| | || ||| |||||| ||||| |||| |||| | ||
Sbjct 3161 --A--CAGAACAT-TGTTGGG-G-AG-AGA--CTACTAATTATATATAA-AGAACATTTT 3209
Query 3228 AAAATCTATCTCTGCTGTAGCCtttttttttttGTTGTGGGTGAAAATGATTATGATCAC 3287
||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||| |||
Sbjct 3210 AAAATCTATCTCTGCTGTAGCCTTTCTTTTGTTGTTGTGGGTGATAATGATTATGACCAC 3269
Query 3288 ATATATATGGTCGTTGAATATCCTTTTTCA 3317
||| ||||||||||||||||||||||||||
Sbjct 3270 ATAGATATGGTCGTTGAATATCCTTTTTCA 3299
> Ahg347817 jgi|Araly1|347817|fgenesh1_pg.C_scaffold_5001209
Length=3069
Score = 464 bits (251), Expect = 2e-129
Identities = 1360/1872 (73%), Gaps = 169/1872 (9%)
Strand=Plus/Plus
Query 102 GAGACTGATATGCAAGCTTTGCTTGAGTTCAAGTCTCAAGTTTCTGAAAACAACAAGAGA 161
|||||||||| ||||| ||||||||||||||||||||||||||||||| ||| ||||
Sbjct 112 GAGACTGATAAACAAGCATTGCTTGAGTTCAAGTCTCAAGTTTCTGAAA-CAAGTAGAGT 170
Query 162 GAGGTCTTGG-CTTCATGGAATCACTCC-TCCC-CATTTTGTAATTGGATTGGAGTCACA 218
| | |||| || | |||||| ||||| | || | | | ||| |||| ||||| | |
Sbjct 171 T-G-TGTTGGGCT-CGTGGAATGACTCCCTGCCTC-TCT-GTAGCTGGACCGGAGTTA-A 224
Query 219 -TGTGGCCGCAGG-AGAGAAAGAGTTA-TAAGTTTGAACCTTGGAGGATTCAAGTTAACC 275
||||||| || | |||| |||| | | || || | ||||||||| | || ||||
Sbjct 225 GTGTGGCCTCAAACACAGAA-GAGTAACTG-GTGTGGATCTTGGAGGACTGAAACTAACT 282
Query 276 GGTGT-GATCTCACCCTCCATTGGTAATCTCTCCTTTCTTAGATTACTTAA-TCTTGCAG 333
||||| | |||| |||| | ||||| ||||| |||||||||| | |||| ||||||||
Sbjct 283 GGTGTAG-TCTCTCCCTTTGTCGGTAACCTCTCATTTCTTAGATCA-TTAAATCTTGCAG 340
Query 334 ACAACTCTTTTG-GAAGTACCATCCCTCAAAAGGTGGGAAGGCTAT-TT-AGGCTTCAGT 390
|||||| |||| | || |||||||| | |||| |||| || | || |||||||| |
Sbjct 341 ACAACT-TTTTCCGTGGTGCCATCCCTTTAGAGGTTGGAAA-CT-TGTTCAGGCTTCAAT 397
Query 391 ACTTGAACATGAGCTATAATCTTCTCGAAGGAAG-GATTCCG-TCTAGT-CTTTCTAACT 447
| |||||||||||| ||||| |||| | ||| | ||| ||| | | || || || ||||
Sbjct 398 ATTTGAACATGAGCAATAATTTTCTTGGAGGG-GTGATCCCGGT-T-GTTCTGTCGAACT 454
Query 448 GCTCTAGACTGTCGAC-CGTTGATTTATCGTCAAACCATCTTGGACATGGTGTTCCTTCA 506
||||||| || || || | |||||||||| ||||| ||||||| ||| || || ||||
Sbjct 455 GCTCTAGTCTTTCAACAC-TTGATTTATCATCAAATCATCTTGAACAAGGCGTGCCTTTT 513
Query 507 GAACTAGGTTCACTTTCTAAGCTTGCCATTCTGGATCTTAGCAAAAACAACCTTACTGGA 566
|| | |||||||| |||||||||| |||||| |||| | | |||||| || || ||
Sbjct 514 GAGTTCGGTTCACTGTCTAAGCTTGTCATTCTATCTCTTGGTACAAACAATCTAACAGGG 573
Query 567 AATTTTCCTGCATCTTTAGGAAACTTGACGTCACTTCAGAA-GCTTGACTTTGCATATAA 625
|| |||||||| || || |||||| |||| ||||| || || ||| || ||| ||||||
Sbjct 574 AAGTTTCCTGCCTCATTGGGAAACCTGACATCACTCCA-AATGCTCGATTTTATATATAA 632
Query 626 CCAGATGAGA-GGTGAGATTCCAGACGAAG-TAGCTAGATTGACTCAAATGGTGTTTTTC 683
||| || ||| || ||||| || | ||| |||| ||| ||| || ||||| ||||||
Sbjct 633 CCAAAT-AGAAGGAGAGATCCCTGG-GAATATAGCCAGACTGAAACAGATGGTCTTTTTC 690
Query 684 CAAATAGCACTGAATA-GTTTT-TCAGGTGGTTTTCC-TCCTGCA-TTGTACAACATCTC 739
| ||||||| | || | |||| | |||| |||||| |||| || || |||||| | ||
Sbjct 691 CGAATAGCATTAAACAAGTTTAAT--GGTG-TTTTCCCTCCTCCAGTT-TACAACCTGTC 746
Query 740 CTCTCTTGAGTCTC-TATCTC-T-AGCTGACAATAGCTTT-TCGGGTAATCTTAGGGCTG 795
||| || | | || | || | | | | | ||| || ||| || || | |||||| |||
Sbjct 747 CTCACTA-ATTTTCCTGTC-CATTACCGG-CAACAG-TTTCTCTGGCACCCTTAGGCCTG 802
Query 796 ATTTTGGTTATCTTCTACCAAATCTA-AGAAGACT-TCTTTTGGGAACAAATCAGTTCAC 853
| ||||||| |||||| || || || | || ||| | | | |||| |||| | |||||
Sbjct 803 ACTTTGGTTCTCTTCTCCCTAACCTTCA-AATACTATATATGGGGAT-AAATAATTTCAC 860
Query 854 TGG-AGCTATTCCCAAA-ACACTTGCCAATATCTCAAGC-CTTGAA-AGGTTTGATATCT 909
|| | | ||||| | | |||||| ||||||||||| | ||| || || || ||||| |
Sbjct 861 GGGTACC-ATTCC-AGAGACACTTTCCAATATCTCA-GTTCTTCAACAGCTT-GATAT-T 915
Query 910 CA-TCTAATTACCTGT-CTGGTA-GTATCCCTTTGAGCTTTGG-AAAGTT-ACGTAATCT 964
| ||||| | || | |||| | | || || ||||| ||||| ||| || | | ||| |
Sbjct 916 CCGTCTAACCATCT-TACTGGAAAG-ATACCATTGAGTTTTGGGAAACTTCA-G-AATTT 971
Query 965 GTGGTGGTTAGGGATTCGTAATAACTCTCTTGGAAA-TAACTCGTCCAGTGGTCTTGAAT 1023
| | |||| || |||||||||||| ||||| || ||| || ||| |||||| |
Sbjct 972 ATTACAGCTAGGCCTTAATAATAACTCTCTGGGAAACTA-CTCTTCTGGTGATCTTGATT 1030
Query 1024 TTATTGGGGCTGTGGCGAACTGCACTCAATTAG-AGTACTT-AGATGTTGG-TTACAATA 1080
|| |||| | || | ||||||| ||| || | ||||||| || | |||| || ||| |
Sbjct 1031 TTCTTGGTACACTGACTAACTGCAGTCAGTT-GCAGTACTTGAGTT-TTGGCTT-CAACA 1087
Query 1081 GACTTGGAGGTGAGCTT-CCTG-CTTCTATAGCCAATCTGTCCACTACA-TTGACT-AGT 1136
|||||| ||| || || |||| ||| |||||||||||| ||||| || || ||| ||
Sbjct 1088 AACTTGGCGGTCAG-TTACCTGTCTT-TATAGCCAATCTCTCCACC-CAATTAACTGAG- 1143
Query 1137 CTGTTCCTTGGACAAAATCTTATCTCTGGAACCATTCCTCATGACATCGGGAATCTTGTA 1196
|| | |||||| |||||| |||||||||| |||||||||| ||| |||||||| |||
Sbjct 1144 CTCTCCCTTGGTGGAAATCTCATCTCTGGAAGTATTCCTCATGGCATAGGGAATCTCGTA 1203
Query 1197 AGCCTGCAAGA-ACTCAG-CTTAGAA-ACAAATATGTTGAGTGG-AGAACTTCC-CGTCT 1251
||||||||| | | | || ||| | | |||| |||||| || | ||||||| | ||
Sbjct 1204 AGCCTGCAA-ACATT-AGACTTGGGCGA-AAATCTGTTGACAGGCA-AACTTCCTCC-CT 1258
Query 1252 CTTTCGG-GAAGCTTT-TGAACTT-GCAG-GT-TGTGGATCTGTATTCAAATGCAATATC 1306
| || || ||| |||| |||||| | | || | || ||| ||||||||| | | ||
Sbjct 1259 CATTGGGAGAA-CTTTCTGAACTGAGAAAAGTCT-TGC-TCT--ATTCAAATGGACTGTC 1313
Query 1307 GGGGGAAATACCATCTTATTTTGGCAACATGACTCGGTTG-CAGAAGCTCCATTTGAATA 1365
|| || |||||||||| || || || || | | || | || | || ||||| ||
Sbjct 1314 TGGAGAGATACCATCTTCCTTGGGGAATATCAGTGGGCTAACATAC-CTGTATTTGCTTA 1372
Query 1366 GCAATAGTTTCCACGGAAGAATCCCT-CAGAGTCTTGGACGTTGTC-GATAC-TTGCTAG 1422
||| ||||| | ||||| |||||| || ||||||||| |||| | | ||| || ||||
Sbjct 1373 ACAACAGTTTTGAAGGAAGCATCCCTTCA-AGTCTTGGAAGTTG-CAGCTACCTT-CTAG 1429
Query 1423 ACCTGTGGA--T-GGATACAAATAGGTTGAATGGGA-CTATACCTCAGGAAAT-ACTGCA 1477
|| | || | | || ||| |||| ||||||||| | | ||||| || || | | || |
Sbjct 1430 AC-T-TGAACCTCGG-TACTAATAAGTTGAATGGCAGC-ATACCCCATGAGCTTA-TGGA 1484
Query 1478 AATTCCATCCCTCG-CTTACATAGAT-TTGTCAAACAATTTCTTGACAGGCCATTTTCCA 1535
| ||||||| || | | | | || || || ||| ||||| ||| |||| ||| |
Sbjct 1485 ACTTCCATCTCTTGTCGT-CTTAAATGTT-TCATTTAATTTGTTGGTTGGCCCTTTGAGA 1542
Query 1536 GAAGAAGTTGGAAAG-TTAGAACTTCTTGTTGGA-CTAGGTGCTTCGTACAACAAATTAT 1593
||||| ||||||||| ||| || |||| || | |||| | ||| ||||| ||| |||
Sbjct 1543 GAAGATGTTGGAAAGCTTA-AATTTCTA-TTAGCTCTAGACGTTTCATACAATAAACTAT 1600
Query 1594 CAGGAAAGATGCCACA-AGCTATAGGGGG-TTGTCTTTCGA-TGGAATTTCTCTTTA-TG 1649
||||| |||| |||| | || | || | |||||| || | | ||||| || ||| ||
Sbjct 1601 CAGGACAGATTCCACGGACCT-T-GGCGAATTGTCTCTC-ACTAGAATTCCT-TTTGCTG 1656
Query 1650 CAAGGAAATTCGTTTGACGGAG-CCATTCCAGATATAAGCCGGTTGG-TAAGCCTAAAGA 1707
||||| ||||| ||| || | |||||||||||||||| ||||| | |||| | |
Sbjct 1657 CAAGGGAATTCATTTTTTGG-GTCCATTCCAGATATAAGAGGGTTGACTG-GCCTCAGGT 1714
Query 1708 ATGTT-GA-CTTCTCCAACAACAATCTCTCTGGC-CGGATACCTCGA-TATCTGGCCAG- 1762
| | || || || || |||||||||||||| | |||||| || ||| |||| |
Sbjct 1715 -TCCTAGATCTG-TCGAAGAACAATCTCTCTGGTACA-ATACCT-GAATATATGGCGAAC 1770
Query 1763 TCTTCCTTCGCTGC-GAAATCTGAATCTTTCTATGAACAAGTTTGAGGGAAGG-GTGCCA 1820
| |||| |||| ||| |||||||| ||| ||||||| || || ||| | ||||||
Sbjct 1771 TTTTCCAAA-CTGCAGAAC-CTGAATCTCTCTGTGAACAACTTCGAAGGA-GCTGTGCCA 1827
Query 1821 ACA-ACAGGAGTGTTTCGAAATGCTACAGCAGTT-TCTGTTTTTGGTAACACAAATATTT 1878
|| | ||| || ||||| ||| | | || | | || || ||||||||| |||| | |
Sbjct 1828 ACGGA-AGGGGTATTTCGTAATACCAGTGC-GATATCGGTCATTGGTAACATAAATCTCT 1885
Query 1879 GCGGAGGCGTCC 1890
| |||||| |||
Sbjct 1886 GTGGAGGCATCC 1897
> Ahg937453 jgi|Araly1|937453|scaffold_501644.1
Length=3025
Score = 424 bits (229), Expect = 3e-117
Identities = 621/804 (77%), Gaps = 52/804 (6%)
Strand=Plus/Plus
Query 2078 ATCTGA-TTCTACTACTTTGGGGATGTTCCAT-GAGAAGGTAAGTTATGAAGAGCTTC-A 2134
|||| | |||| | ||||||||| |||||| || ||| ||||||| | ||| |||| |
Sbjct 2002 ATCTAACTTCTTCCACTTTGGGGGCCTTCCATGGA-AAGATAAGTTACGGAGATCTTCGA 2060
Query 2135 TAGTGCAACAAG-TCGCTTCTCTTCAACCAATTTGATTGGTTCAGGCAATTTCGGTAATG 2193
| ||| || || | |||||||||||| |||||||||||| ||||||| ||| |||| ||
Sbjct 2061 -AATGCGAC-AGATGGCTTCTCTTCAAGCAATTTGATTGGGTCAGGCAGTTTTGGTACTG 2118
Query 2194 TGTTTAAAGG-ATTGCTTGGCCCTG--AGAATA-AA-CTCGTCGCGGTTAAAGTTTTGAA 2248
||||| |||| ||||| | ||| | |||| | || | || || || |||||| | ||
Sbjct 2119 TGTTT-AAGGCATTGC-T--CCC-GACAGAAAACAAGATTGTTGCAGTGAAAGTTCTAAA 2173
Query 2249 CCTCCTAAAG-CATGGAGCGACGAAAAGCTTTATGGCGGAATGTGAAACCTTCAAGGGTA 2307
| | | | || | |||||||| ||| ||||||||||| ||||||||| |||| |||| ||
Sbjct 2174 CATGC-AGAGACGTGGAGCGATGAAGAGCTTTATGGCAGAATGTGAATCCTTGAAGGATA 2232
Query 2308 TACGACATCGTAACCTTGTAAAACTGA-TAACGGTTTGTTCAAGCCTTGA-TTCCGAGGG 2365
|| | |||||||| ||||| ||||| | | || | ||| | || |||| |||| | ||
Sbjct 2233 TAAGGCATCGTAATCTTGTGAAACT-ATTGACAGCTTGCGCTAGTATTGATTTCC-AAGG 2290
Query 2366 AAATGATTTCAGAGCTCTGGTCTATGAGTTCATGCCAAAAGGAAGTC-TGGATATGTGGC 2424
|| || ||||||||||| | |||||||||||||| || ||||| | ||||||||||||
Sbjct 2291 TAACGAATTCAGAGCTCTCATATATGAGTTCATGCCGAATGGAAG-CTTGGATATGTGGC 2349
Query 2425 TGCAGCTAGAAGATCTGGAA-AGGGT-AAACGATCACTCGAGATCTTTAACACCCGCAGA 2482
|||| | ||| || | ||| || | | | | | ||| ||| | || || | |
Sbjct 2350 TGCACCCAGAGGAAATCGAAGAGATTCATA-G-GCCCTCAAGAACCTTGAC-TCTTC-TT 2405
Query 2483 GAAA--CTCAACATAGCAATAGATGTGGCTTCAGCTTTGGAGTATCTGCACGTTCATTGT 2540
|||| |||||||| || ||||| |||||||| | |||||| ||||| || |||||||||
Sbjct 2406 GAAAGGCTCAACATTGCTATAGACGTGGCTTCTGTTTTGGACTATCTTCATGTTCATTGT 2465
Query 2541 CATGACCCTGTAGCTCACTGTGATATTAAGCCAAGCAACATTCTTCTAGACGATGATCTG 2600
||||| ||| ||||||| || ||| |||||||||||||| | ||||| |||||||||||
Sbjct 2466 CATGAGCCTATAGCTCATTGCGATCTTAAGCCAAGCAACGTACTTCTCGACGATGATCTA 2525
Query 2601 ACTGCTCATGTTAGTGACTTTGGTTTGGCTCAGCTCCTC-TAT-AAATACGATCGA-GAA 2657
||||| |||||||| ||||||||| |||||| | || || | | |||| |||| | ||
Sbjct 2526 ACTGCCCATGTTAGCGACTTTGGTCTGGCTC-G-TCTTCTTCTCAAATTTGATC-AGGAG 2582
Query 2658 TCCTTTCTAAACCAGTTTAGTTCTGCTGGTGTCAGAGGCACCATTGGCTATGCCGCGCCA 2717
|||||| | ||||| | || || |||||||| ||||| |||||||| ||||| || |||
Sbjct 2583 TCCTTTTTCAACCAACTAAGCTCAGCTGGTGTTAGAGGAACCATTGGGTATGCTGCACCA 2642
Query 2718 GAGTATGGAATGGGAGGCCAACCATCAATACAAGGAGATGTGTACAGCTTCGGAATTCTA 2777
|| ||||||||||||||||||||||||||||| || ||||| |||||||| || ||||
Sbjct 2643 GAATATGGAATGGGAGGCCAACCATCAATACACGGTGATGTATACAGCTTTGGGGTTCTT 2702
Query 2778 CTTTTGGAGATGTT-TAGTGGAAAGAA-ACCAAC-AGATGAA-TCATTTGCAGGCGA--T 2831
||||||| ||||| | |||||| | |||||| | |||| | ||||| ||| || |
Sbjct 2703 GTTTTGGAAATGTTCTC-TGGAAA-ACGACCAACCA-ATGAGCT-ATTTG-AGGGGAACT 2757
Query 2832 TATAACCTCCACAGCTACAC-AAA 2854
| || ||| |||||||||| |||
Sbjct 2758 T-TACCCTATACAGCTACACCAAA 2780
> Ahg937452 jgi|Araly1|937452|scaffold_501643.1
Length=3025
Score = 411 bits (222), Expect = 2e-113
Identities = 622/808 (77%), Gaps = 55/808 (7%)
Strand=Plus/Plus
Query 2078 ATCTGA-TTCTACTACTTTGGGGATGTTCCAT-GAGAAGGTAAGTTATGAAGAGCTTC-A 2134
|||| | |||| | ||||||||| |||||| || ||| ||||||| | ||| |||| |
Sbjct 2002 ATCTAACTTCTTCCACTTTGGGGGCCTTCCATGGA-AAGATAAGTTACGGAGATCTTCGA 2060
Query 2135 TAGTGCAACAAG-TCGCTTCTCTTCAACCAATTTGATTGGTTCAGGCAATTTCGGTAATG 2193
| ||| || || | |||||||||||| |||||||||||| ||||||| ||| |||| ||
Sbjct 2061 -AATGCGAC-AGATGGCTTCTCTTCAAGCAATTTGATTGGGTCAGGCAGTTTTGGTACTG 2118
Query 2194 TGTTTAAAGG-ATTGCTTGGCCCTG--AGAATA-AA-CTCGTCGCGGTTAAAGTTTTGAA 2248
||||| |||| ||||| | ||| | |||| | || | || || || |||||| | ||
Sbjct 2119 TGTTT-AAGGCATTGC-T--CCC-GACAGAAAACAAGATTGTTGCAGTGAAAGTTCTAAA 2173
Query 2249 CCTCCTAAAG-CATGGAGCGACGAAAAGCTTTATGGCGGAATGTGAAACCTTCAAGGGTA 2307
| | | | || | |||||||| ||| ||||||||||| ||||||||| |||| |||| ||
Sbjct 2174 CATGC-AGAGACGTGGAGCGATGAAGAGCTTTATGGCAGAATGTGAATCCTTGAAGGATA 2232
Query 2308 TACGACATCGTAACCTTGTAAAACTGA-TAACGGTTTGTTCAAGCCTTGA-TTCCGAGGG 2365
|| | |||||||| ||||| ||||| | | || | |||| | || |||| |||| | ||
Sbjct 2233 TAAGGCATCGTAATCTTGTGAAACT-ATTGACAGCTTGTGCTAGTATTGATTTCC-AAGG 2290
Query 2366 AAATGATTTCAGAGCTCTGGTCTATGAGTTCATGCCAAAAGGAAGTC-TGGATATGTGGC 2424
||| || |||||| |||| | |||||||||||||| | ||||| | |||||| |||||
Sbjct 2291 AAACGAATTCAGATCTCTCATATATGAGTTCATGCCGATTGGAAG-CTTGGATAGGTGGC 2349
Query 2425 TGCAGCTAGAAGATCTGGAAAGGGTAAACG-A-TCACTCGAGATCTTTAACACCCGCAGA 2482
|||| | ||| || ||| ||| | | || | | ||| ||| | || ||| | | |
Sbjct 2350 TGCATCCAGAGGAAGTGG-AAGAG-ATTCGTAGGCCCTCAAGAACCTTGACA-CTTCTTA 2406
Query 2483 GAAA--CTCAACATAG-CAATAGATGTGGCTTCAGCTTTGGAGTATCTGCACGTTCATTG 2539
||| || ||||| | | ||||| |||||||| | |||||| ||||| || ||| ||||
Sbjct 2407 -AAAGGCTTAACATTGTC-ATAGACGTGGCTTCTGTTTTGGATTATCTTCATGTTTATTG 2464
Query 2540 TCATGACCCTGTAGCTCACTGTGATATTAAGCCAAGCAACATTCTTCTAGACGATGATCT 2599
|||||| ||| ||||||| ||||||||||||||||||||| | ||||| |||||| ||||
Sbjct 2465 TCATGAGCCTATAGCTCATTGTGATATTAAGCCAAGCAACGTCCTTCTCGACGATAATCT 2524
Query 2600 GACTGCTCATGTTAGTGACTTTGGTTTGGCTCAGCTCCTCT-AT-AAATACGATCGA-GA 2656
|| || |||||||| ||||||||| |||||| | || ||| | |||| ||| | | ||
Sbjct 2525 AACCGCCCATGTTAGCGACTTTGGTCTGGCTC-G-TCTTCTCCTCAAATTCGA-CCAGGA 2581
Query 2657 ATCCTTTC-TAAACCAGTTTAGTTCTGCTGGTGTCAGAGGCACCATTGGCTATGCCGCGC 2715
||| ||| | ||||| | || || |||||||| ||||| ||||| || ||||| || |
Sbjct 2582 GTCC-TTCTTTAACCAACTAAGCTCAGCTGGTGTTAGAGGAACCATCGGGTATGCTGCAC 2640
Query 2716 CAGAGTATGGAATGGGAGGCCAACCATCAATACAAGGAGATGTGTACAGCTTCGGAATTC 2775
|||| ||||||||||||||||||||||||||||| || ||||| |||||||| || |||
Sbjct 2641 CAGAATATGGAATGGGAGGCCAACCATCAATACACGGTGATGTATACAGCTTTGGGGTTC 2700
Query 2776 TAC-TTTTGGAGATGTTTAGTGGAAAGAA-ACCAAC-AGATGAA-TCATTTGCAGGCGA- 2830
| | ||||||| ||||| | |||||| | ||| || | |||| | ||||| ||| ||
Sbjct 2701 T-CGTTTTGGAAATGTTCACTGGAAA-ACGACCTACCA-ATGAGCT-ATTTG-AGGGGAG 2755
Query 2831 -TTATAACCTCCACAGCTACACAAAGTC 2857
|| || ||| ||||||||||| |||||
Sbjct 2756 CTT-TACCCTACACAGCTACACCAAGTC 2782
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 125361645462
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5