BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G20500.1

Length=645
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg941600 jgi|Araly1|941600|scaffold_602144.1                        628    1e-179


> Ahg941600 jgi|Araly1|941600|scaffold_602144.1
Length=447

 Score =  628 bits (340),  Expect = 1e-179
 Identities = 422/459 (92%), Gaps = 15/459 (3%)
 Strand=Plus/Plus

Query  29   agaagaagaagaagaagaaagGAGCCATGACAATGTTTAGATCTATCTCCATGGTAATGC  88
            ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| 
Sbjct  1    AGAAGAAGAAGAAGAAGAAAGGAGCCATGACAATGCTTAGATCTATCTCGATGGTAATGT  60

Query  89   TGCTCGTCGCACTAGTTACATTCATTTCTATGGTTTCTTCTGCTGCTTCGTCCCCAGAAG  148
            |||||||    |     |||||||||||||||||||||||| ||||||| ||||||||||
Sbjct  61   TGCTCGT----C-----ACATTCATTTCTATGGTTTCTTCTTCTGCTTCTTCCCCAGAAG  111

Query  149  CCGACTTTGTTAAGAAGACTATCTCTTCCCATAAGATCGTCATTTTCTCCAAATCCTACT  208
            ||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||
Sbjct  112  CCGACTTTGTTAAGAAGACCATCTCTTCCCACAAGATCGTCATCTTCTCCAAATCCTACT  171

Query  209  GCCCCTACTGCAAGAAAGCTAAATCAGTGTTCAGAGAGCTGGATCAAGTTCCTTATGTTG  268
            ||||||| |||| |||||||||||| || ||||||||||| |||||||||||||||||||
Sbjct  172  GCCCCTATTGCAGGAAAGCTAAATCCGTTTTCAGAGAGCTAGATCAAGTTCCTTATGTTG  231

Query  269  TCGAGCTTGATGAAAGAGAAGATGGTTGGAGCATCCAGACTGCACTTGGAGAGATTGTTG  328
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  232  TCGAGCTTGATGAAAGAGAAGATGGGTGGAGCATCCAGACTGCACTTGGAGAGATTGTTG  291

Query  329  GAAGGCGAACAGTACCGCAAGTCTTCATTAACGGAAAACATC-TCGGAGGATCAGATGAT  387
            | ||||||||||||||||||||||||||| |||||||||| | | ||||||||||| |||
Sbjct  292  GGAGGCGAACAGTACCGCAAGTCTTCATTGACGGAAAACA-CATTGGAGGATCAGACGAT  350

Query  388  ACCGTAGATGCGTATGAGAGCGGTGAACTCGCCAAGCTTCTTGGTGTTTCCGGGAACAAA  447
            |||||||||||| | |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct  351  ACCGTAGATGCGAACGAGAGCGGTGAACTGGCCAAGCTTCTTGGTGTTTCCGGAAACAAA  410

Query  448  GAA-GCTGAACTCTAGGTT-ATATATAGTTGGAAGAATT  484
             || ||||||||||||||| | |||||||||||||||||
Sbjct  411  -AATGCTGAACTCTAGGTTGA-ATATAGTTGGAAGAATT  447



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23636208540


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5