BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G20500.1 Length=645 Score E Sequences producing significant alignments: (Bits) Value Ahg941600 jgi|Araly1|941600|scaffold_602144.1 628 1e-179 > Ahg941600 jgi|Araly1|941600|scaffold_602144.1 Length=447 Score = 628 bits (340), Expect = 1e-179 Identities = 422/459 (92%), Gaps = 15/459 (3%) Strand=Plus/Plus Query 29 agaagaagaagaagaagaaagGAGCCATGACAATGTTTAGATCTATCTCCATGGTAATGC 88 ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| Sbjct 1 AGAAGAAGAAGAAGAAGAAAGGAGCCATGACAATGCTTAGATCTATCTCGATGGTAATGT 60 Query 89 TGCTCGTCGCACTAGTTACATTCATTTCTATGGTTTCTTCTGCTGCTTCGTCCCCAGAAG 148 ||||||| | |||||||||||||||||||||||| ||||||| |||||||||| Sbjct 61 TGCTCGT----C-----ACATTCATTTCTATGGTTTCTTCTTCTGCTTCTTCCCCAGAAG 111 Query 149 CCGACTTTGTTAAGAAGACTATCTCTTCCCATAAGATCGTCATTTTCTCCAAATCCTACT 208 ||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||| Sbjct 112 CCGACTTTGTTAAGAAGACCATCTCTTCCCACAAGATCGTCATCTTCTCCAAATCCTACT 171 Query 209 GCCCCTACTGCAAGAAAGCTAAATCAGTGTTCAGAGAGCTGGATCAAGTTCCTTATGTTG 268 ||||||| |||| |||||||||||| || ||||||||||| ||||||||||||||||||| Sbjct 172 GCCCCTATTGCAGGAAAGCTAAATCCGTTTTCAGAGAGCTAGATCAAGTTCCTTATGTTG 231 Query 269 TCGAGCTTGATGAAAGAGAAGATGGTTGGAGCATCCAGACTGCACTTGGAGAGATTGTTG 328 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 232 TCGAGCTTGATGAAAGAGAAGATGGGTGGAGCATCCAGACTGCACTTGGAGAGATTGTTG 291 Query 329 GAAGGCGAACAGTACCGCAAGTCTTCATTAACGGAAAACATC-TCGGAGGATCAGATGAT 387 | ||||||||||||||||||||||||||| |||||||||| | | ||||||||||| ||| Sbjct 292 GGAGGCGAACAGTACCGCAAGTCTTCATTGACGGAAAACA-CATTGGAGGATCAGACGAT 350 Query 388 ACCGTAGATGCGTATGAGAGCGGTGAACTCGCCAAGCTTCTTGGTGTTTCCGGGAACAAA 447 |||||||||||| | |||||||||||||| ||||||||||||||||||||||| |||||| Sbjct 351 ACCGTAGATGCGAACGAGAGCGGTGAACTGGCCAAGCTTCTTGGTGTTTCCGGAAACAAA 410 Query 448 GAA-GCTGAACTCTAGGTT-ATATATAGTTGGAAGAATT 484 || ||||||||||||||| | ||||||||||||||||| Sbjct 411 -AATGCTGAACTCTAGGTTGA-ATATAGTTGGAAGAATT 447 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23636208540 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5