BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G20510.1
Length=1023
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941601 jgi|Araly1|941601|scaffold_602145.1 1284 0.0
Ahg484769 jgi|Araly1|484769|fgenesh2_kg.5__761__AT3G42790.1 520 1e-146
> Ahg941601 jgi|Araly1|941601|scaffold_602145.1
Length=825
Score = 1284 bits (695), Expect = 0.0
Identities = 778/818 (95%), Gaps = 6/818 (1%)
Strand=Plus/Plus
Query 52 GAGAGACGGACATGGAAGGAGGAACTG-CGCACTACAGCCCTCGAACTGTCGAAGAAGTC 110
||||||||||||||||||||||| | | ||||||||| ||||||||||||||||||||||
Sbjct 11 GAGAGACGGACATGGAAGGAGGAGC-GTCGCACTACAACCCTCGAACTGTCGAAGAAGTC 69
Query 111 TTTCGAGATTTTAAGGGCCGTCGAGCTGGCATCATCCAAGCTCTCACCACTGATGTGGAA 170
|| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 70 TTCCGAGATTTCAAGGGCCGTCGAGATGGCATCATCCAAGCTCTCACCACTGATGTGGAA 129
Query 171 GATTTTTTCCAGCAATGCGACCCTGAGAAGCAGAATCTCTGCTTGTATGGATTCCCAAAT 230
|||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 130 GATTTTTTAAAGCAATGCGACCCTGAGAAGGAGAATCTTTGCTTGTATGGATTCCCAAAT 189
Query 231 GAAGTGTGGGAAGTTAACTTACCAGCTGAAGAAGTGCCTCCTGAGCTTCCCGAACCTGCA 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 190 GAAGTGTGGGAAGTTAACTTACCAGCTGAAGAAGTGCCTCCTGAGCTTCCCGAACCTGCA 249
Query 291 CTCGGCATTAACTTTGCCAGAGATGGGATGCAGGAAAGAA-ACTGGCTTTCTCTCGTTGC 349
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 250 CTCGGCATTAACTTTGCCAGAGATGGGATGCAGGAAA-AAGACTGGCTTTCTCTCGTTGC 308
Query 350 TGTCCACAGTGATGCGTGGTTACTTTCTGTGTCTTTTTACTTTGGTTCAAGATTTGGTTT 409
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 309 TGTCCACAGTGATGCGTGGTTACTTTCTGTGTCCTTTTACTTTGGTTCAAGAATTGGTTT 368
Query 410 CGATAGAGCTGACAGGAAGCGCTTGTTTAGTATGATAAATGAGGTTCCTACTGTATATGA 469
|||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||
Sbjct 369 TGATAGAGCTGACAGGAAGCGCTTGTTCAACATGATAAATGAGGTTCCTACTGTATTTGA 428
Query 470 AGTTGTAACTGGAAATGCAGA-GAAGCAAACAAAGGAAATGCCCTCTTCAGCAAATCAAA 528
||||||||||||||||| ||| ||| ||||||||||||| ||||||||||||||||||||
Sbjct 429 AGTTGTAACTGGAAATG-AGAAGAAACAAACAAAGGAAAAGCCCTCTTCAGCAAATCAAA 487
Query 529 ATGGCAACAGATCCAAGTCAAATTCAAAAATGAGAGGTTTAGAAAGTAAAAGTTCAAAGA 588
||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||
Sbjct 488 ATGGCAACAGATCCAAGTCAAATTCAAAAGTGAGAGGTTTAGAAGGTAACAGTTCAAAGA 547
Query 589 CGATACATGCCaaggatgaggaagaaggattagagttagaagaaggggaagaggaagagg 648
||||||| || ||||| |||||||||||||||||| |||| |||||||||||||||||||
Sbjct 548 CGATACAGGCTAAGGACGAGGAAGAAGGATTAGAGATAGAGGAAGGGGAAGAGGAAGAGG 607
Query 649 atgaggatgaagaCGAACACGGTGAAACCCTATGTGGAGCATGTGGAGATAACTATGCTT 708
| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 608 AAGAGGATGAAGATGAACACGGTGAAACCCTATGTGGAGCTTGTGGAGATAACTATGCTT 667
Query 709 CTGATGAATTCTGGATTTGCTGTGACATGTGCGAGAAATGGTTCCACGGGGAGTGTGTGA 768
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 668 CTGATGAATTCTGGATTTGCTGTGACATGTGCGAGAAATGGTTCCACGGGAAGTGTGTGA 727
Query 769 AGATCACTCCAGCTAGAGCGGAGCATATCAAGCATTACAAGTGCCCTACTTGCAGCAACA 828
||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||
Sbjct 728 AGATCACTCCAGCTAGAGCTGAGCATATCAAGCATTATAAGTGCCCTTCTTGCAGCAACA 787
Query 829 AAAGAGCACGACCCTAGATGTTTTATTTCCACTAATCT 866
|||||||||||||||||||||||||||||||||| |||
Sbjct 788 AAAGAGCACGACCCTAGATGTTTTATTTCCACTAGTCT 825
> Ahg484769 jgi|Araly1|484769|fgenesh2_kg.5__761__AT3G42790.1
Length=1017
Score = 520 bits (281), Expect = 1e-146
Identities = 635/801 (79%), Gaps = 44/801 (5%)
Strand=Plus/Plus
Query 62 CATGGAAGGAGGAACTGCGCACTACAGCCCTCGAACTGTCGAAGAAGTCTTTCGA-GATT 120
||||||||| ||| |||| | |||| |||||||||||||||||||| |||| | ||||
Sbjct 118 CATGGAAGGTGGAGCTGCTCTTTACAATCCTCGAACTGTCGAAGAAGT-TTTCAAGGATT 176
Query 121 TTAAGGGCCGTCGAGCTGGCATCATCCAAGCTCTCACCACTGATGTGGAAGATTTTTTCC 180
| || || ||||| |||| ||| || ||||||||||||| ||||| |||| |||| ||
Sbjct 177 TCAAAGGTCGTCGTGCTGCCATTGTCAAAGCTCTCACCACCGATGTTCAAGAGTTTTACC 236
Query 181 AGCAATGCGACCCTGAGAAGCAGAATCTCTGCTTGTATGGATTCCCAAATGAAGTGTGGG 240
| ||||| |||||||| ||| ||||||| || |||||||| || || ||||||| ||||
Sbjct 237 AACAATGTGACCCTGAAAAGGAGAATCTTTGTTTGTATGGGTTACCGAATGAAGAATGGG 296
Query 241 AAGTTAACTTACCAGCTGAAGAAGTGCCTCCTGAGCTTCCCGAACCTGCACTCGGCATTA 300
|||| || ||||||||||||||||||||||||||||| || || || || || ||||| |
Sbjct 297 AAGTGAATTTACCAGCTGAAGAAGTGCCTCCTGAGCTACCAGAGCCAGCTCTTGGCATCA 356
Query 301 ACTTTGCCAGAGATGGGATG-CAGGAAA-GAAACTGGCTTTCTCTCGTTGCTGTCCACAG 358
||||||| ||||||||| | | | ||| ||| ||||||||||| |||||| | |||||
Sbjct 357 ACTTTGCTAGAGATGGGCTCTCTGAAAAAGAA--TGGCTTTCTCTTGTTGCTATTCACAG 414
Query 359 TGATGCGTGGTTACTTTCTGTGTCTTTTTACTTTGGTTCAAGATTTGGTTTCGATAGAGC 418
|||||| |||||||| ||||| || ||||||||||| ||||| ||| |||| | | ||
Sbjct 415 TGATGCTTGGTTACTCTCTGTCTCGTTTTACTTTGGCTCAAGGTTTTCTTTCCACA-AGG 473
Query 419 TG-ACAGGAAGCGCTTGTTTAGTATGATAAATGAGGTTCCTACTGTATATGAAGTTGTAA 477
| | |||||||||||||| | ||||| ||||| ||||||||| ||| |||||| || |
Sbjct 474 AGGAAAGGAAGCGCTTGTTCAACATGATCAATGATGTTCCTACTATATTTGAAGTAGTGA 533
Query 478 CTGGAAATG-CAGAGAAGCAAACAAAGGA-AATGCCCTCTTCAGCAAATCAAAATGGCAA 535
|||||| || | | |||| || ||| || | | ||| | || |||||||| || ||
Sbjct 534 CTGGAA-TGGCC-A-AAGCGAA----GGACAA-GTCATCTGCTGCCAATCAAAACGGAAA 585
Query 536 CAGATCCAAGTCAAATTCAAAAATGAGAGGTTTAGAAAGTAAAAGTTCAAAGACGATACA 595
|| ||||||||| || |||||| | ||| || |||| | ||||| |||||||| || ||
Sbjct 586 CAAATCCAAGTCGAACTCAAAAGTTAGAACTTCAGAAGGCAAAAGCTCAAAGACCATGCA 645
Query 596 TGCCaaggatgaggaagaaggattagagttagaagaaggggaagaggaagaggatgagga 655
||||| | ||||| | | | || || ||| | || ||||| ||||||||
Sbjct 646 -GCCAAA-A-GAGGA-G--G-AC--GA---AG--GAAT---A-GATGAAGATGATGAGGA 687
Query 656 tgaagaCGAACACGGTGAAACCCTATGTGGAGCATGTGGAGATAACT-ATGCTTCTGATG 714
||| | ||||| |||||||| |||||||| |||||||| | | ||| | ||||||
Sbjct 688 TGA---C---CACGGCGAAACCCTTTGTGGAGCCTGTGGAGACAG-TGATGGTGCTGATG 740
Query 715 AATTCTGGATTTGCTGTGACATGTGCGAGAAATGGTTCCACGGGGAGTGTGTGAAGATCA 774
|||||||||| ||||||||| | || ||||| |||||||| || |||||||||||||||
Sbjct 741 AATTCTGGATCTGCTGTGACCTTTGTGAGAAGTGGTTCCATGGCAAGTGTGTGAAGATCA 800
Query 775 CTCCAGCTAGAGCGGAGCATATCAAGCATTACAAGTGCCCTACTTGCAGCAACAAAAGAG 834
||||||||||||| ||||||||||| || |||||||||||| | ||||||||||||||||
Sbjct 801 CTCCAGCTAGAGCTGAGCATATCAAACAATACAAGTGCCCTTCATGCAGCAACAAAAGAG 860
Query 835 CACGACCCTAGATGTTTTATT 855
||||| | || ||||| ||||
Sbjct 861 CACGAGCTTAAATGTTCTATT 881
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38046671166
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5