BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G20520.1
Length=1448
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941602 jgi|Araly1|941602|scaffold_602146.1 1580 0.0
> Ahg941602 jgi|Araly1|941602|scaffold_602146.1
Length=969
Score = 1580 bits (855), Expect = 0.0
Identities = 933/971 (96%), Gaps = 4/971 (0%)
Strand=Plus/Plus
Query 120 CTTTAGCAGAACCAGAGGAAATGGTGACGTACGTGAGCGCGTTGTTCTACGGATTCGGAG 179
||||||||||| |||||||||||||||| || ||||||||||||||||||||| | ||||
Sbjct 1 CTTTAGCAGAAACAGAGGAAATGGTGACCTATGTGAGCGCGTTGTTCTACGGAGTAGGAG 60
Query 180 GGATAGTCGTCGCCGGAGTGGCGCTGCTCGTGGCTTTCCAGGAGAAGCTTGTGTACGTCC 239
| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
Sbjct 61 GTATAGTCGTCGCCGGAGTTGCGCTGCTCGTGGCTTTCCAGGAGAAGCTTGTCTACGTAC 120
Query 240 CAGTGCTTCCGGGTTTAAGCAAGTCTTATCCGATCACTCCCGCTAGGCTCAATCTCATCT 299
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CAGTGCTTCCCGGTTTAAGCAAGTCTTATCCGATCACTCCCGCTAGGCTCAATCTCATCT 180
Query 300 ACGAAGATATTTGGCTTCAATCATCCGATGGTGTACGTCTCCACGCTTGGTTCATCAAGA 359
||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 181 ACGAAGACGTTTGGCTTCAATCATCCGATGGTGTTCGCCTCCACGCTTGGTTCATCAAGA 240
Query 360 TGTTCCCTGAATGTCGAGGTCCAACCATTTTATTTTTCCAGGAGAACGCTGGAAACATCG 419
||||||| |||||||||||||||||||||||||||||||||||||| || |||||||| |
Sbjct 241 TGTTCCCCGAATGTCGAGGTCCAACCATTTTATTTTTCCAGGAGAATGCCGGAAACATTG 300
Query 420 CTCATCGTCTGGAGATGGTTCGCATCATGATACAAAAATTGAAGTGCAATGTATTCATGC 479
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 301 CTCATCGTCTGGAGATGGTTCGCATCATGATTCAAAAATTGAAGTGCAATGTATTCATGC 360
Query 480 TTTCATATCGCGGCTATGGGGCAAGTGAAGGCTATCCTTCACAACAAGGTATCATAAAAG 539
|||||||||||||||| ||||||||||| || ||||||||||| ||||| ||||||| ||
Sbjct 361 TTTCATATCGCGGCTACGGGGCAAGTGATGGTTATCCTTCACAGCAAGGAATCATAAGAG 420
Query 540 ATGCTCAGGCTGCATTGGATCACCTTTCTGGAAGGACTGACATTGATACATCTAGAATAG 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ATGCTCAGGCTGCATTGGATCACCTTTCTGGAAGGACTGACATTGATACATCTAGAATAG 480
Query 600 TTGTATTTGGAAGGTCCCTTGGGGGAGCTGTTGGAGCTGTGCTTACCAAAAACAATCCAG 659
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TTGTGTTTGGAAGGTCCCTTGGGGGAGCTGTTGGAGCTGTGCTTACCAAAAACAATCCAG 540
Query 660 ATAAGGTATCTGCATTGATTCTGGAAAATACTTTCACATCCATTCTTGATATGGCTGGCG 719
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 541 ATAAGGTATCTGCATTGATTCTAGAAAATACTTTCACATCCATTCTTGATATGGCTGGCG 600
Query 720 TTTTGCTGCCGTTCTTGAAGTGGTTTATTGGAGGAAGTGGTACGAAAAGCCTGAAGCTTC 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTTTGCTGCCGTTCTTGAAGTGGTTTATTGGAGGAAGTGGTACGAAAAGCCTGAAGCTTC 660
Query 780 TTAATTTTGTTGTACGTTCTCCCTGGAAAACAATTGATGCTATTGCTGAGATCAAACAAC 839
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 661 TTAATTTTGTTGTACGTTCCCCCTGGAAAACAATTGATGCTATTGCTGAGGTCAAACAAC 720
Query 840 CAGTGCTTTTCCTCTCTGGACTGCAAGATGAGATGGTCCCTCCATTTCACATGAAAATGC 899
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CGGTGCTTTTCCTCTCTGGACTGCAAGATGAGATGGTCCCTCCATTTCACATGAAAATGC 780
Query 900 TGTATGCGAAAGCGGCTGCCCGTAACCCTCAGTGCACATTTGTGGAGTTTCCAAGTGGGA 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TGTATGCGAAAGCGGCTGCCCGTAACCCTCAGTGCACATTTGTGGAGTTTCCAAGTGGGA 840
Query 960 TGCATATGGATACATGGCTGTCTGGTGGTGAAGTTTACTGGAAAACAAACTTGCAATTTC 1019
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 841 TGCATATGGATACATGGCTGTCTGGTGGTGAAGTTTACTGGAAAACAAACATGCAGTTTC 900
Query 1020 TCGAAAAGTATGCGCCTGAGAAAAGGAAAGA-AGATACAGGAAGGTAACGA-TCAACGAT 1077
| ||||||||||||||||||||||||||||| | ||||||||||||||||| | | ||||
Sbjct 901 TTGAAAAGTATGCGCCTGAGAAAAGGAAAGACA-ATACAGGAAGGTAACGAGTGA-CGAT 958
Query 1078 GCTGTGTTTAG 1088
|||||||||||
Sbjct 959 GCTGTGTTTAG 969
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54164328390
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5