BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G20540.1
Length=1533
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488958 jgi|Araly1|488958|fgenesh2_kg.6__2092__AT5G20540.1 2276 0.0
> Ahg488958 jgi|Araly1|488958|fgenesh2_kg.6__2092__AT5G20540.1
Length=1477
Score = 2276 bits (1232), Expect = 0.0
Identities = 1408/1490 (94%), Gaps = 23/1490 (2%)
Strand=Plus/Plus
Query 1 AAAGTAGAAGAAACTGACACCAtctctgtctctctctctcCGTATCCaaaaagagaaaga 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
Sbjct 1 AAAGTAGAAGAAACTGACAACATCTCTGTCTCTCTCTCTCCGTATCCAAAAAGAG-AA-A 58
Query 61 aaaaaaaTCTCAAATCAAAGACCAAGCCAGTCACCGGAAAATGCTGACGTGTATAGCTCG 120
||| ||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 59 AAACAAA--TCAAATCAAAGACCAAGCCAGTCGCCGGAAAATGCTGACGTGTATACCTCG 116
Query 121 TTCGAAGCGAGCAGGCGATGAATCCTCCGGTCAACCAGACGATCCAGATTCTAAAAACGC 180
||| || ||||| | ||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 117 TTCAAAACGAGCCGACGATGAATCCTCCGGTCAACCCGACGATCCAGATTCTAAACACGC 176
Query 181 CAAATCTCTAACATCTCAGCTCAAAGATATGGCTCTGAAAGCATCAGGAGCTTACCGGCA 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 177 CAAATCTCTAACATCTCAGCTCAAAGATATGGCTCTTAAAGCATCAGGAGCTTACCGGCA 236
Query 241 TTGTACGCCGTGTACGGCGGCACAAGGTCAGGGACAAGGACAAGGTCCGATCAAGAACAA 300
|||||||||||| |||||||| |||||||||||||||||||| ||||||||||||| |||
Sbjct 237 TTGTACGCCGTGCACGGCGGCGCAAGGTCAGGGACAAGGACAGGGTCCGATCAAGACCAA 296
Query 301 TCCGTCGTCGTCGTCGGTAAAGTCGGATTTCGAATCGGATCAACGGTTTAAAATGCTTTA 360
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 297 TCCGTCAACGTCGTCGGTAAAGTCGGATTTCGAATCGGATCAACGGTTTAAAATGCTGTA 356
Query 361 CGGAAGATCAAACAGTTCGATTACAGCTACGGCGGCGGTGGCGGCGACGCA-ACAACAAC 419
||||||||||||||||||||||||| |||||||||||| | ||||| || | || ||||
Sbjct 357 CGGAAGATCAAACAGTTCGATTACATCTACGGCGGCGGCGACGGCGGCG-ACGCAGCAAC 415
Query 420 AGCCTAGGGTTTGGGGAAAGGAGATGGAAGCGAGACTAAAAGGGATTTCGAGCGGCGAAG 479
|||||||||||||||| ||||||||||||||||| || |||||||| |||||||||||||
Sbjct 416 AGCCTAGGGTTTGGGGGAAGGAGATGGAAGCGAGGCTTAAAGGGATATCGAGCGGCGAAG 475
Query 480 CGACTCCGAAATCGGCGAGTGGGAGAAACCGGGTCGACCCGATTGTGTTTGTGGAGGAGA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 CGACTCCGAAATCGGCGAGTGGGAGAAACCGGGTCGACCCGATTGTGTTTGTGGAGGAGA 535
Query 540 AAGAGCCTAAAGAATGGGTTGCTCAGGTTGAGCCCGGAGTTCTCATAACCTTCGTTTCTC 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 AAGAGCCTAAAGAATGGGTTGCTCAGGTTGAGCCCGGAGTTCTCATAACCTTCGTTTCTC 595
Query 600 TTCCCGGCGGTGGTAATGATCTCAAGCGGATACGTTTCAGCCGAGACATGTTCAACAAGT 659
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 TTCCCGGCGGTGGTAACGATCTCAAGCGGATACGTTTCAGCCGAGACATGTTCAACAAGT 655
Query 660 TACAAGCTCAACGATGGTGGGCAGATAACTATGACAAAGTAATGGAACTTTACAATGTTC 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 TACAAGCTCAACGATGGTGGGCAGATAACTATGACAAAGTAATGGAACTTTACAATGTTC 715
Query 720 AAAAACTAAGCCGCCAAGCTTTCCCGCTTCCC-AC-CCCGCCTAGATCCGAAGACGAGAA 777
||||||||||||| |||||||||||||| ||| || ||| |||||||| |||||||||||
Sbjct 716 AAAAACTAAGCCGACAAGCTTTCCCGCT-CCCTACGCCC-CCTAGATCGGAAGACGAGAA 773
Query 778 TGCAAAAGTGGAGTACCATCCAGAAGACACTCCTGCAACACCGCCTCTAAACAAAGAACG 837
||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 774 AGCAAAAGTGGAGTACCATCTAGAGGACACTCCTGCAACACCGCCTCTAAACAAAGAACG 833
Query 838 GTTGCCTCGTACTATCCATCGTCCACCTGGATTGGCTGCTTACTCATCCTCAGATTCACT 897
||||||||||| ||||||||||||| |||||||||| |||||||||||||| ||||||||
Sbjct 834 GTTGCCTCGTAATATCCATCGTCCAGCTGGATTGGCGGCTTACTCATCCTCGGATTCACT 893
Query 898 CGACCATAATTCAATGCAGAGCCAGCAGTTCTATGACTCTGGTCTACTCAACTCAACTCC 957
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 894 CGACCATAATTCAATGCAAAGCCAGCAGTTTTATGACTCTGGTCTACTCAACTCAACTCC 953
Query 958 TAAAGTTTCAAGCATCAGTGTAGCCAAGACAGAAACTTCTTCCATAGATGCTTCCATAAG 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 TAAAGTTTCAAGCATCAGTGTAGCCAAGACAGAAACTTCTTCCATAGATGCTTCCATAAG 1013
Query 1018 AAGCAGCTCGTCGAGAGATGCAGACCGGTCAGAGGAAATGTCGGTAAGCAATGCGAGTGA 1077
|||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 1014 AAGCAGCTCGTCAAGAGATGCAGACAGGTCAGAGGAAATGTCGGTGAGCAATGCGAGTGA 1073
Query 1078 TGTTGACAACGAATGGGTGGAGCAAGATGAGCCTGGCGTTTATATCACCATTAAAGTTTT 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 TGTTGACAACGAATGGGTGGAGCAAGATGAGCCTGGCGTTTATATCACCATTAAAGTTTT 1133
Query 1138 ACCAGGTGGGAAAAGAGAGCTTCGAAGAGTCAGATTCAGCCGAGAGAGATTCGGGGAGAT 1197
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1134 ACCAGGTGGGAAAAGAGAGCTTAGAAGAGTCAGATTCAGCCGAGAGAGATTCGGGGAGAT 1193
Query 1198 GCACGCGAGATTATGGTGGGAAGAGAACAGGGCAAGGATACATGAACAATACTTGTGA-T 1256
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 1194 GCACGCGAGATTATGGTGGGAAGAGAACAGAGCAAGGATACATGAACAATACTTGTGAAT 1253
Query 1257 CATAAATCTAAGAGTTTTGTTT-TTTCCTCATTCTCTCGGTATACAGTCttttttt-CCA 1314
| | || ||| | ||||||| ||||||||||||||||||||||||| ||||||| |||
Sbjct 1254 TGTGA-TC-AAGGGCTTTGTTTCTTTCCTCATTCTCTCGGTATACAGTTTTTTTTTTCCA 1311
Query 1315 GCTCAAGTAAATT-CTTCCACAGGTACTCATTGTGCCTCCCAGAAATCTCAAAATATCAA 1373
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1312 GCTCAAGTAAATTTCTTCCACAGGTACTCATTGTGCCTCCCAAAAATCTCAAAATATCAA 1371
Query 1374 TTGTGGGATATGTTTTAAGGAGGTTTCTTATTTTCTTCCTTCaaaaaa-aTTTG-AGAAA 1431
|||||| |||| ||||||||||||||||||| |||||||| |||||| ||| | | |||
Sbjct 1372 TTGTGGAATATTTTTTAAGGAGGTTTCTTATGCTCTTCCTT-AAAAAAGATT-GCA-AAA 1428
Query 1432 GCTTGGAAAAGATA-AGATGTTGTCTCCTTTGCTCAATATGTGTATCCTT 1480
|||||||||| ||| | ||||||||| |||||||| ||||||||||||||
Sbjct 1429 GCTTGGAAAATATATA-ATGTTGTCTTCTTTGCTCCATATGTGTATCCTT 1477
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57401999215
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5