BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G20560.1
Length=1014
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488959 jgi|Araly1|488959|fgenesh2_kg.6__2093__AT5G20560.1 691 0.0
> Ahg488959 jgi|Araly1|488959|fgenesh2_kg.6__2093__AT5G20560.1
Length=963
Score = 691 bits (374), Expect = 0.0
Identities = 404/419 (96%), Gaps = 0/419 (0%)
Strand=Plus/Plus
Query 590 CAAGTACACCGATCTTCGTCAATATCTATCCTTACTACTTCCATGCCTCCGACCCAAAGA 649
||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 512 CAAGTACACCGATATTCGTCAATATCTATCCTTACTACTTCTATGCGTCCGACCCAAAGA 571
Query 650 ACGTCCCTCTCGAGTACGCCAATTTCAATAACGACCAGATCGTGGTCAAAGACGGTGCAC 709
||||||||||||||||| | |||||||||| |||||||||||||||||| ||||||||||
Sbjct 572 ACGTCCCTCTCGAGTACACTAATTTCAATACCGACCAGATCGTGGTCAAGGACGGTGCAC 631
Query 710 TAAAATATTCCAACTTGTTTGATGCAATTTTCGACGCTTTTCTGTGGGCAATGGAGAAAG 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 632 TAAAATATTCCAACTTGTTTGATGCAATTTTCGACGCTTTTCTGTGGGCAATGGAGAAAG 691
Query 770 AGGGAGTGAAAGGTTTACCTTTGGTGGTGTCGGAGACCGGGTGGCCCTCTGCCGGGAATG 829
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 692 AGGGAGTGAAAGGTTTACCTTTGGTGGTGTCAGAGACTGGGTGGCCCTCTGCCGGGAATG 751
Query 830 GAGGCATGACGACACCGGCTCTTCAATATACGTACATTGGTAACTTTGTGAAGCATGTTG 889
|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 752 GAGGTATGACGACGCCGGCTCTTCAATATACGTACATTGGTAACTTTGTGAAGCATGTGG 811
Query 890 CAAGTGGTAAAGGAACGCCTAAGAGGCCAAATAGTAGAATTGATGCGTATATATTTGAGA 949
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 812 CAAGCGGTAAAGGAACGCCTAAGAGGCCAAATAGTAGAATTGATGGGTATATATTTGAGA 871
Query 950 CGTACAATGAGAACCAGAAGCCAGTTGGAATCTATCAGCATTTTGGGTTATACGATCCT 1008
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 872 CATACAATGAGAACCAGAAGCCAGTTGGAATCTATCAGCATTTTGGGTTATACGATCCT 930
Score = 623 bits (337), Expect = 8e-178
Identities = 393/421 (93%), Gaps = 0/421 (0%)
Strand=Plus/Plus
Query 6 GGACTATTCTAAGAACTTGTTCCTATTACTTTTCTCATGCACAGCGTTGATTATCAGCTA 65
||||||||||||||| ||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct 3 GGACTATTCTAAGAAGTTGTTCCTAGTACTTCTCTCATGCGTAGCGTTGATTATCAGCTA 62
Query 66 CTACAACGTTGATTCTTTAAGTACTGCATCAGTCGTCGGATTGAATTACGGACTCCTCGG 125
| |||| |||||||| ||||| || ||||||||||||||||||| ||||| ||||||||
Sbjct 63 CAACAAAGTTGATTCCTTAAGCACAACATCAGTCGTCGGATTGAACTACGGCCTCCTCGG 122
Query 126 AGACAACCTCCCATCTCCGTCCAATGTTATCAAGTTCTACAAATCTCAAAACGTTGCGAA 185
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 123 AGACAACCTCCCATCTCCGTCCAATGTTATCAAGTTCTACAAATCTCAAAATGTTGCGAA 182
Query 186 AATCAGGATATTCGAGCCAAACAAAGACGTCCTAAACGCTTTGCGTGGAAACCGAGATAT 245
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||
Sbjct 183 AATCAGGATATTCGAGCCAAACAAGGACGTCCTAAACGCCTTGCGTGGAAACCGAGAGAT 242
Query 246 TGGAGTCACCGTAGGCATCAAGAACGAAGACTTGGAGGCACTTGCAGCCAACAAAGACGC 305
|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 243 CGGAGTCACCGTAGGCATCAAGAACGAAGACTTGGCGGCTCTTGCAGCCAACAAAGACGC 302
Query 306 AGTTAAATCCTGGTTCTCCACTAACATTGATCCTTACATAGCCGACGTGAACATAACATT 365
| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 303 AATTAAATCCTGGTTCGCCACTAACATTGATCCTTACATAGCCGACGTCAACATAACATT 362
Query 366 CATTACCGTCGGAAACCAAGCCATCCCGGGCGACAAACATGGCCCTCACGTGCTTCCTGT 425
|||||||||||||||||||| ||||||||||||| | ||||||| ||||||||||||||
Sbjct 363 TATTACCGTCGGAAACCAAGCGATCCCGGGCGACATATATGGCCCCCACGTGCTTCCTGT 422
Query 426 C 426
|
Sbjct 423 C 423
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37703564913
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5