BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G20570.2
Length=764
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488960 jgi|Araly1|488960|fgenesh2_kg.6__2094__AT5G20570.1 484 3e-136
> Ahg488960 jgi|Araly1|488960|fgenesh2_kg.6__2094__AT5G20570.1
Length=661
Score = 484 bits (262), Expect = 3e-136
Identities = 313/338 (93%), Gaps = 2/338 (1%)
Strand=Plus/Plus
Query 1 TCTCTCTACAACAAAATC-AGCGACAGCTCAAACGTTGATATTTTTCTCCGGCTTTTCTA 59
|||||| ||||| ||| | ||||| ||||||||| |||| |||||||| |||||||||||
Sbjct 1 TCTCTCCACAAC-AAACCAAGCGAGAGCTCAAACTTTGAGATTTTTCTTCGGCTTTTCTA 59
Query 60 GGGTTTAAATTTTCTTTCCGATCAGAGATTAATGGCGACTCTAGACTCCGACGTTACCAT 119
|||||| ||||||| ||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 60 GGGTTTTAATTTTCCTTCCGATCAGAGATTAATGGCGAATCTGGACTCCGACGTTACCAT 119
Query 120 GATTCCTGCCGGAGAAGCCTCCAGCAGCGTAGCCGCGTCGTCTTCCAACAAGAAAGCTAA 179
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 120 GATTCCTGCCGGAGAAGCCTCCAGCAGCGTAGCCGCTTCGTCTTCCAACAAGAAAGCTAA 179
Query 180 GCGATTCGAAATTAAGAAGTGGAGCGCCGTTGCTCTCTGGGCTTGGGATATCGTTGTTGA 239
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GCGATTCGAGATTAAAAAGTGGAGCGCCGTTGCTCTCTGGGCTTGGGATATCGTTGTTGA 239
Query 240 CAACTGTGCGATCTGCAGAAACCACATCATGGATCTTTGTATCGAGTGTCAGGCTAATCA 299
|||||||||||||||||||||||||||||||||||| || || || ||||| ||||||||
Sbjct 240 CAACTGTGCGATCTGCAGAAACCACATCATGGATCTGTGCATTGAATGTCAAGCTAATCA 299
Query 300 GGCCAGTGCCACAAGTGAAGAGTGCACTGTAGCTTGGG 337
|||||| || |||||||| || |||||||| |||||||
Sbjct 300 GGCCAGCGCTACAAGTGAGGAATGCACTGTTGCTTGGG 337
Score = 396 bits (214), Expect = 1e-109
Identities = 295/331 (89%), Gaps = 17/331 (5%)
Strand=Plus/Plus
Query 408 GGGGGTTTGCAATCACGCCTTCCACTTTCACTGCATCAGCAGATGGCTAAAGACTCGTCA 467
||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 336 GGGGGTTTGTAATCACGCCTTCCACTTTCACTGCATCAGCAGATGGTTAAAGACTCGTCA 395
Query 468 AGTTTGTCCATTGGATAACAGTGAGTGGGAGTTTCAGAAATATGGTCACTAAATCAACAA 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 396 AGTTTGTCCATTGGATAACAGTGAGTGGGAGTTTCAGAAATATGGTCACTAAATCAACAA 455
Query 528 ATGGTTCCAGCAAGCATGTGTCTAATCGTGAAGACATCAGGTTCATTTGGTTACCACCGC 587
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 456 ATGGTTCCAGCAAACATGTGTCTAATCGTGAAGATATCAGGTTCATTTGGTTACCACCGC 515
Query 588 ATATGATAACTAAAGATTGTTCAAGTTTTTGCC-CtttttttG-------GTACTGTATT 639
||||||||||||||||||||||||||||| || |||||||| ||||||||||
Sbjct 516 ATATGATAACTAAAGATTGTTCAAGTTTT-GCTTCTTTTTTTTTTTTTTTGTACTGTATT 574
Query 640 T-TACAATTTGTGGAAACAGAGATTTACTGTTCAGTGTTCACTAA-ACCTATTATGGTTG 697
| | ||| |||||| ||| ||| ||||||||||| || | ||| | | || || ||
Sbjct 575 TCT-CAAATTGTGGGAACGGAGGTTTACTGTTCACTGAAC-CTATTATCG-TTGTGCTT- 630
Query 698 TG-C-TTTGGGTGACGTCTTTGATTTCAAAA 726
|| | ||||||||||||||||||||| ||||
Sbjct 631 TGGCCTTTGGGTGACGTCTTTGATTTTAAAA 661
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28172835663
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5