BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G20580.1
Length=1421
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488961 jgi|Araly1|488961|fgenesh2_kg.6__2095__AT5G20580.2 2141 0.0
> Ahg488961 jgi|Araly1|488961|fgenesh2_kg.6__2095__AT5G20580.2
Length=1430
Score = 2141 bits (1159), Expect = 0.0
Identities = 1314/1388 (95%), Gaps = 14/1388 (1%)
Strand=Plus/Plus
Query 30 TTGATTGATTGATTTCACAGTGAAGATTTCTAATTCTTACGCTTGCTCTTCACATCTCTC 89
||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1 TTGATTGATTGATTTGACAGTGAAGATTTCT-ATTCTTACGCTTGCTCTTCACATCTCCC 59
Query 90 AAATCTCCAGATTGGAGCAACGAATCTGATTCAACCCTAATTTCAAGCAAAA-ACCC-C- 146
||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
Sbjct 60 AAATCTCCAGATTGGAGCAACGAATATGATTCAACCCTAATTTCAAGCAAAAGCCCCTCT 119
Query 147 --TTACCAAGCCTCTGAGATTACATACAGTCGTCACTCCAACATACGAGAGAAGATACCC 204
||| |||| ||| |||||||||||||||| ||||||||||| || | |||||| ||||
Sbjct 120 TTTTA-CAAGTCTCGGAGATTACATACAGTCTTCACTCCAACAAACCAAAGAAGAAACCC 178
Query 205 AAACCAAAATGGCCAACGATCGACGCGCTTCTTCTGTCAATCCGTCGACGGAGCAAGACA 264
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 179 AAACCAAAATGGCTAACGATCGACGCGCTTCTTCTGTCAATCCGACGACGGAGCAAGACA 238
Query 265 ATGCTATGTTTCTTGATATATTGCATGAAGCTCCTCTCTTTGGTCATCGTGAATCGAGAA 324
|||||||||||||||||||| |||||||||||||||| || |||||||| ||||||||||
Sbjct 239 ATGCTATGTTTCTTGATATACTGCATGAAGCTCCTCTATTCGGTCATCGAGAATCGAGAA 298
Query 325 GTCTTGTTGGAAGCTGCATTTATCTTATCATATTGGCATGTTATGCTATTTTAGCAGCAG 384
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 299 GTCTCGTTGGAAGCTGCATTTATCTTATCATATTGGCAGGTTATGCTATTTTAGCAGCAG 358
Query 385 GGGCACCGTGGATACTTCAGTCTGTAGACTATCTTATCCCATCGCTGCTTTGCAGCTGTA 444
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 359 GGGCACCGTGGATACTTCAGTCTGTAGAGTATCTTATCCCATCGCTGCTTTGCAGCTGCA 418
Query 445 ATGTTGCTTTATTGATGTTAACAGGTATGTTTCAGCAATATTTTGTCAATCAGGTCCAGA 504
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 ATGTTGCTCTCTTGATGTTAACAGGTATGTTTCAGCAATATTTTGTCAATCAGGTCCAGA 478
Query 505 AAATACGCTTGCAGGGTTATTACAGTTTCAGTCAGAAACTGAAACATGTAGTTCGTCTGC 564
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 479 AAATACGCTTGCAGGGTTATTACAGTTTCAGTCAGAAATTGAAACATGTAGTTCGTCTGC 538
Query 565 CATTTGCAATCATGGCCTATGGGACTGCATCTATGCTACTTTTCATGGAGTGGAGACCAT 624
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 539 CATTTGCAATCATGGCCTATGGGACTGCATCTATGCTACTTTTCATGGTGTGGAGACCAT 598
Query 625 ATGTCAGTGTTCTACCCATTTTTACTGTGCAAAGGTTCATCATGTCTGTTGAAGCAATTT 684
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 ATGTCAGTGTTCTTCCCATTTTTACTGTGCAAAGGTTCATCATGTCTGTTGAAGCAATTT 658
Query 685 CTGCTGCTTCTTTTATGATTGTATTTGTTGGTTATGTTCGCCAGTATAACTCAGTGAATT 744
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 659 CTGCGGCTTCTTTTATGATTGTATTTGTTGGTTATGTTCGCCAGTATAACTCAGTGAACT 718
Query 745 CTCAGCCCGATGTCTTAAATTCATTATATTCTCCTCTTCAACCAGCTGCTTTGGAAGGAT 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 CTCAGCCCGATGTCTTAAATTCATTATATTCTCCTCTTCAACCAGCTGCTTTGGAAGGAT 778
Query 805 TGAGATACCATGAAGCCGGTCGCCTTTCTGATCAACAAATGGCTCTACTGCAATATCAAC 864
|||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||| |
Sbjct 779 TGAGATACCATGAAGCTGGTCGCCTCTCTGATCAGCAAATGGCTCTACTGCAATATCAGC 838
Query 865 GCGAGAATCTCCATTATCTCAGTGAAGAGATTCTGCGTTTGCAGGAGTCCTTAAGTAAAT 924
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 839 GTGAGAATCTCCATTATCTCAGTGAAGAGATTCTGCGTTTGCAGGAGTCCTTAAGCAAAT 898
Query 925 ATGAAACGAATGGTAGTAGCACGCCTCAGGTTGATCTGGCGCATCTTGTGGCAACTCGAG 984
||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||| |
Sbjct 899 ATGAAACGAGTGGTAGTAGCACGCCTCAGGTTGATTTGGCGCATCTTGTGGCCACTCGTG 958
Query 985 ATCAGGAATTACGAACACTATCTGCTGAGGTGGATCAACTCCATTCAGAGCTTAATCTCG 1044
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 959 ATCAGGAATTGCGAACACTTTCTGCTGAGGTGGATCAACTCCATTCAGAGCTTAATCTCG 1018
Query 1045 CTCGATCTCTGATCTCTGAGAGAGATAGAGAGATACAACACGTCCGGAATACCAATAATC 1104
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1019 CTCGATCTCTGATCTCTGAGAGAGATAGAGAGATACAGCACGTCCGGAATACCAATAATC 1078
Query 1105 AGTATGTAGCAGAAAATGAAAGGTTAAGAGCTATTCTTGGAGAATGGAGTATGCGAGCTG 1164
||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1079 AGTATGTTGCAGAAAATGAAAGGTTAAGAGCTATCCTTGGAGAATGGAGTATGCGCGCTG 1138
Query 1165 CAAAGCTTGAACGAGCTCTGGAGGTGGAGAGAATATCAAATATTGAACTGCGGAAGAAAG 1224
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1139 CAAAGCTTGAACGAGCTCTGGAGGTGGAGAGAATATCAAATCTTGAACTGCGGAAGAAAG 1198
Query 1225 TTTCAGCTCTCAGAGACCAGAGGCAGGTGGCATGAAGCATATACAT-CATCTAAC--TAT 1281
|||| |||||||||||||||||||| ||||||||||||||| |||| |||||||| |||
Sbjct 1199 TTTCGGCTCTCAGAGACCAGAGGCAAGTGGCATGAAGCATAAACATTCATCTAACAATAT 1258
Query 1282 ATGCAACTCTTATGGCTTGTAGAAAAATATCTTGACACTATTTTCTAACATCTTGATGCA 1341
||| ||||| |||||||||||||||| ||||||||||||||||| ||||||||| || |
Sbjct 1259 ATGTAACTCATATGGCTTGTAGAAAACTATCTTGACACTATTTTGTAACATCTTCATATA 1318
Query 1342 TT-GAATACGCTAAGCTTTTATGATGTAATGATTTTCCAGTTAATTTGAACTAA-GCGTA 1399
|| || || | |||||||||||||||||||||||||||| |||||||||||| || ||
Sbjct 1319 TTTGATTA-GATAAGCTTTTATGATGTAATGATTTTCCAATTAATTTGAACTCTTGC-TA 1376
Query 1400 TGTAATGA 1407
||||||||
Sbjct 1377 TGTAATGA 1384
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53135891775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5