BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G20590.1
Length=1757
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488963 jgi|Araly1|488963|fgenesh2_kg.6__2097__AT5G20590.1 2505 0.0
> Ahg488963 jgi|Araly1|488963|fgenesh2_kg.6__2097__AT5G20590.1
Length=1619
Score = 2505 bits (1356), Expect = 0.0
Identities = 1545/1635 (94%), Gaps = 17/1635 (1%)
Strand=Plus/Plus
Query 14 TGACCAAAGTCGCATCTCACGGTGAGATGAGTTCTTCGTAGCTCCAATGGTGGTGGTGGC 73
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1 TGACCAAAGTCGCATCTCACGGTGAGATGAGTTCTGCGTAGCTCCAA---TGGTGGTGGC 57
Query 74 TTCACAATGTCGACTTCTTCTTCTTTCCCTCGAACCATCGTCTCCTACACTGTGACAACT 133
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 58 TTCACAATGTCGACTTCTTCTTCTTTCCCTCGCACCATCGTCTCCTACACTGTGACAACT 117
Query 134 TCGCTCTTCATCGTTATCTTCCTATGCAGCGTCTTCTTCTTCACTAGACGCACTCTCGAA 193
||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 118 TCGCTCTTCGTCGTTATCTTCCTATGCAGCGTCTTCTTCTTCACGAGACGCTCTCTCGAA 177
Query 194 CCTTCTCTCTCTCCTTACCACACCGCCGACATCCCTCTCCCCGCCGTCGATCTACCACCT 253
|||||||||||||||||| || ||||||||||||||||| |||||||||||||||| |||
Sbjct 178 CCTTCTCTCTCTCCTTACTACGCCGCCGACATCCCTCTCTCCGCCGTCGATCTACCCCCT 237
Query 254 CCTACGCCTCTCCTCCCTCAAATCGAGCCTCACGATGGTGACGTCACCGTGGAAACGAAT 313
|||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 238 CCTACGCCTCTCCTCCCTCAAATCGAACCTCACGATGGTAACGTCACCGTGGAAACGAAA 297
Query 314 CCTAAGGAGGTAGAAGATTCGCGCCGCGGAGGCGATGACGTCGCGGTAGAGACTGAGCTG 373
| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 298 CAAAAGGAGGTAGGAGATTCGCGCCGCGGCGGCGATGACGTCGCGGTAGAGACTGAGCTG 357
Query 374 AAACTGAAAGATGTGGAAGATTCGCACACGGAGAAAACCGAGGAGGAGGAAGAAGGTAGA 433
||||| |||||||| |||||||||| |||||||||||| || | ||| |||||||| ||
Sbjct 358 AAACTAAAAGATGTAGAAGATTCGCGCACGGAGAAAACTGAAGTGGAAGAAGAAGGCGGA 417
Query 434 GGAGAATCGCCCGGTGAAGTTTCCGTAGAATCTGTGGAACATGCGGTGATTGAGAAGATG 493
| || |||| | | | || ||||||||||| ||||||||| | |||||||||
Sbjct 418 GAAGGATCG--C------G---CGGT-GAATCTGTGGACCATGCGGTGGTCGAGAAGATG 465
Query 494 AGAGGCTGTGATTTGTACAAGGGATCGTGGGTTAAGGGCGATGATGAGTATCCATTGTAT 553
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 466 AGAGGCTGTGATTTGTACAGGGGATCGTGGGTTAAGGACGATGATGAGTATCCATTGTAT 525
Query 554 CAGCCTGGATCGTGTCCTTATGTGGACGATGCTTTTGATTGCCAGAGGAATGGGAGGCGT 613
|||||||||| ||||||||||||||| || |||||||||||||||||||| |||||||||
Sbjct 526 CAGCCTGGATTGTGTCCTTATGTGGATGAAGCTTTTGATTGCCAGAGGAACGGGAGGCGT 585
Query 614 GATTCTGACTATCTTAATTGGAGATGGAAGCCTGACGGTTGTGATCTTCCACGGTTTAAT 673
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 586 GATTCCGACTATCTTAATTGGAGATGGAAGCCTGACGGTTGTGACCTTCCACGGTTTAAT 645
Query 674 GCTACAGACTTCTTGGTGAAGCTACGAGGTAAAAGTTTGATGTTGGTTGGAGATTCAATG 733
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 646 GCTACAGACTTCTTGGTGAAGCTACGAGGTAAAAGTTTGATGTTAGTTGGAGATTCAATG 705
Query 734 AATCGTAACCAGTTTGAATCAATGCTTTGCGTTCTACGAGAAGGTTTATCGGATAAGAGT 793
||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||
Sbjct 706 AATCGTAACCAGTTTGAATCAATGCTTTGCGTTCTTCGAGAAGGCTTATCTGATAAGAGT 765
Query 794 AGAATGTATGAGGTTCATGGCCATAATATAACAAAAGGGAGAGGCTACTTTGTATTCAAG 853
|||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 766 AGAATGTACGAGGTTCATGGTCACAATATAACAAAAGGGAGAGGCTACTTTGTATTCAAG 825
Query 854 TTTGAAGATTATAATTGCACAGTAGAGTTTGTGA-GGTCACATTTTCTTGTGAGGGAAGG 912
|||| |||||| || ||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 826 TTTGTAGATTACAACTGCACAGTAGAGTTTGT-ACGGTCACATTTTCTTGTGAGGGAAGG 884
Query 913 AGTTAGAGCAAATGCTCAAGGAAATACTAATCCGACCCTTTCCATTGATCGCATTGACAA 972
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 885 AGTTAGAGCAAATGCTCAAGGAAATACTAATCCCACCCTTTCGATTGATCGCATTGACAA 944
Query 973 GTCACATGCTAAATGGAAGCGAGCTGACATTCTTGTCTTTAACACTGGACATTGGTGGGT 1032
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 945 GTCACATGCTAAATGGAAGCGAGCTGACATTCTTGTCTTTAACACTGGACATTGGTGGGT 1004
Query 1033 TCATGGAAAGACCGCCAGAGGGAAAAACTACTACAAAGAAGGTGACTACATCTACCCGAA 1092
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1005 TCATGGAAAGACCGCCAGAGGGAAAAACTACTACAAAGAAGGTGACTACATCTATCCAAA 1064
Query 1093 ATTTGATGCTACTGAAGCATACAGAAGGTCGTTGAAGACTTGGGCAAAATGGATCGATCA 1152
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1065 ATTTGATGCTACTGAAGCATACAGAAGGTCGTTGAAGACTTGGGCAAAATGGATCGATGA 1124
Query 1153 GAATGTGAATCCCAAAAAGCAGCTTGTATTTTATCGCGGATACTCCTCTGCCCATTTTCG 1212
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1125 AAATGTGAATCCCAAAAAGCAGCTTATATTTTATCGCGGATACTCCTCTGCCCATTTTCG 1184
Query 1213 GGGAGGTGAGTGGGACTCGGGAGGGTCATGCAACGGGGAGGTAGAACCTGTGAAGAAGGG 1272
|||||||||||||||||| ||||||||||||||||| ||||||||||| || ||||| ||
Sbjct 1185 GGGAGGTGAGTGGGACTCTGGAGGGTCATGCAACGGAGAGGTAGAACCGGTAAAGAAAGG 1244
Query 1273 TTCAATCATCGATTCCTATCCTTTGAAAATGAAGATAGTCCAGGAAGCCATAAAGGAGAT 1332
||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 1245 TTCAATCATTGATTCCTATCCTTTGAAAATGAAGATAGTCGAGGAAGCCATCAAGGAGAT 1304
Query 1333 GCAAGTTCCTGTGATTCTTCTAAACGTGACAAAGCTGACTAATTTCCGCAAAGACGGACA 1392
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1305 GCAAGTTCATGTGATTCTTCTAAACGTGACAAAGCTGACTAATTTCCGCAAAGACGGGCA 1364
Query 1393 TCCATCAATCTACGGTAAGACCAACACGGATGGTAAGAAAGTGTCGACAAGGCGACAGGA 1452
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1365 TCCATCAATCTACGGTAAGACCAATACGGATGGTAAAAAAGTGTCGACAAGGCGACAGGA 1424
Query 1453 TTGCAGCCACTGGTGCCTGCCGGGAGTTCCCGATGTTTGGAACCATCTTATCTACGCATC 1512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1425 TTGCAGCCACTGGTGCCTGCCGGGAGTTCCCGATGTTTGGAACCATCTTATCTACGCATC 1484
Query 1513 TTTGCTCCTTCAACCACATTCTTAAAGTTGAGCTCATACATCAACAAAATTAGATAGAAA 1572
||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||| ||
Sbjct 1485 TTTGCTCCTTCAACCACATTCCTAAATTTGAGCACATACATCAACAAAATTAGATAGTAA 1544
Query 1573 GAGAAGAGCAGAAACAAATGACCAGTCCAGTCTTCACTGTTGTAGTAGTGATGTCAAATT 1632
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1545 GAGAAGAGCAGAAACAAATGACCAATCCAGTCTTCACTGTTGTAGTAGTGATGTCAAATT 1604
Query 1633 TTGTGTAATTTATTG 1647
|||||||||||||||
Sbjct 1605 TTGTGTAATTTATTG 1619
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65934214095
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5