BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G20600.1
Length=1856
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941614 jgi|Araly1|941614|scaffold_602158.1 2477 0.0
> Ahg941614 jgi|Araly1|941614|scaffold_602158.1
Length=1649
Score = 2477 bits (1341), Expect = 0.0
Identities = 1552/1653 (94%), Gaps = 17/1653 (1%)
Strand=Plus/Plus
Query 71 TCCTCAAAAATTCGATAACAATGGTGAAACGGAATCGAGTTCCGCCGGCAGAACAAGCAT 130
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 TCCTCAAAAATTCGATAACAATGGTGAAACGGAATCGAGTTTCGCCGGCAGAACAAGCAT 60
Query 131 TACCCATCGAAGAAGATTGCAAATCGTTGATAAAAAAGCTTGCTTCGTGTAAGCAATCAA 190
||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 61 TACCCATTGAAGAAGATTGCAAATCGTTGATAAAGAAGCTTGCTTCGTGCAAGCAATCAA 120
Query 191 TCCGCGACAGATCCTTGCGAACTGTTCTTCGTACTTGGCTCCCAGAACAAACTGAAATCT 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCCGCGACAGATCCTTGCGAACTGTTCTTCGTACTTGGCTCCCAGAACAAACTGAAATCT 180
Query 251 CCGATGAAGATATGAAGAAGCTATGGCAAGGAATCTTCTATTGTGTCTGGCACGCTGATA 310
||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 181 CCGATGAAGATATGAAGAAGCTATGGCAAGGAATCTTCTATTGCATCTGGCACGCCGATA 240
Query 311 AGTCTCTTTACCAATCAGAACTTATTGATCGTCTCTCTTCTGCTCTTCAATCACTTCCTC 370
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 241 AGTCTCTTTACCAATCAGAACTCATTGATCGTCTCTCTTCTGCTATTCAATCACTTCCTC 300
Query 371 TTCCTTTGTCTATCCATTACTTCACCGTCTTCTTGTTCACCATGCGTCGTGAGTGGTCTC 430
|| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 301 TTTCTTTGTCTCTCCATTACTTCACTGTCTTCTTGTTCACCATGCGTCGTGAGTGGTCTC 360
Query 431 GTATTGATCGGCTCAGGTTAGATAAGTTCTACCTATTGATTCGTAGGTTCTTGCACGGTT 490
|||||||||||||||||||||||||||| ||||| |||||||| ||||| ||||||||||
Sbjct 361 GTATTGATCGGCTCAGGTTAGATAAGTTTTACCTCTTGATTCGAAGGTTTTTGCACGGTT 420
Query 491 TCTTCTCACTTATTGATAGCAATTCATGGGATTTGGAATTCACTCGTCGTTTGATGGGTA 550
||||||| ||| ||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 421 TCTTCTCTCTTCTTGATAGTAATTCGTGGGATTTGGAATTCACTCGTCGTTTGATGGGTG 480
Query 551 TTTTGTTCGACGGGACTTTACTTGCTGATGATAAGTTTCAAGGGAATGGTGTTAACTATC 610
|||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 481 TTTTGTTCGATGGGACTTTCCTTGCTGGTGATAAGTTTCAAGGGAATGGTGTTAACTATC 540
Query 611 ATATAACTTCTGCTTTTGTTGAAGAGCTTAGGCCGTTTCTTCCATTAAGGAAGGAGGTTT 670
||||| |||||| |||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 541 ATATAGCTTCTGTTTTTGTTGAAGAGCTTAGGCCGTTTCTTCCTTTAAGGAAAGAGGTTT 600
Query 671 TGGAACTTCTTTTTGCTCCTTTTGTGAAGATTATGGGTGTTGTTAATGATAAGATTTTGG 730
||||||||||||||||||| ||||||| ||| |||||||||||| |||||||| |||||
Sbjct 601 TGGAACTTCTTTTTGCTCCCTTTGTGACCATTTTGGGTGTTGTTACTGATAAGACTTTGG 660
Query 731 TGGGGAAGATTAAGAGTAATTTGTTTGATGAGTTACTGAAGATGGGGAAGAAGCTACTGA 790
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 661 TGGGGAAGATTAAGAGTAATTTGTTTGAGGAGTTACTGAAGATGGGGAAGAAGCTGCTGA 720
Query 791 TAATTAA-ACAATCTGGGGATGATGCAGTGCCTGAGGATGATGATGTTGTGGTTTTGGGA 849
||||||| | || ||||| |||||| ||||||||||||||||||||| |||||||||||
Sbjct 721 TAATTAAGAAAA-CTGGGAATGATGTAGTGCCTGAGGATGATGATGTAGTGGTTTTGGGT 779
Query 850 TCTATTGCTTTGTCTATGGAGTTTGCAAAGAGGTTTTATGAGTTGGGTTCTTCTCCGGAG 909
||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 780 TCTATTGCTTTGTCTATGGAGTTTGCAAAGAGGTTCTATGAGATGGGTTCTTCTCCGGAT 839
Query 910 TGTCATCAGGGTAATAGGAAATTGATATTTGCTCTTCACAAGGAGTTTTTGCAGTTGGAG 969
|||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 840 TGTCATCAAGGTAATAGGAAATCGATATTTGCTCTTCACAAGGAGTTCTTGCAGTTGGAG 899
Query 970 AAGGATATGTCGAGTTCTAGTATCGAAGTATCTATCGTAGAAGCTTCTCGTCCTGGCAAC 1029
||||||||||||| |||| |||||| ||| ||||||| |||||||||||||||||||||
Sbjct 900 AAGGATATGTCGACTTCTGGTATCGCAGTTTCTATCGCAGAAGCTTCTCGTCCTGGCAAT 959
Query 1030 GATGAAGTTCCTGAA-TCGGTTCCTGTGTCTGAGTCT-AATACAAATGTTGTTTCTAAGT 1087
|||||||| |||||| | ||||||||||||||||||| ||| ||||| || ||||||||
Sbjct 960 GATGAAGTGCCTGAACT-GGTTCCTGTGTCTGAGTCTGAAT-CAAATACTGGTTCTAAGT 1017
Query 1088 CTAA---GAAGATTGTTGCTAATGGGTCTTCTTCAAAGAAGAAGGGTTTGAAGAAATGTT 1144
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 CTAATAAGAAGATTGTTGCGAATGGGTCTTCTTCAAAGAAGAAGGGTTTGAAGAAATGTT 1077
Query 1145 CAAAGACTAAAAAAGACAGTGTCAAGAAAGG-TGCTGTTATGGATAGTGTTGTCGATCTT 1203
||||||||||||||| |||||||||||| || |||||||||||||| |||| | ||||||
Sbjct 1078 CAAAGACTAAAAAAGGCAGTGTCAAGAA-GGATGCTGTTATGGATAATGTTATTGATCTT 1136
Query 1204 GGTAACAAAGATGAATCCTTTGATGAGACTATGATATCAGATCTTCGACAGGAGTTTGAG 1263
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 GGTAACAAAGATGAAGCTTTTGATGAGACTATGATATCAGATCTTCGACAGGAGTTTGAG 1196
Query 1264 AAGATTGCCTCTGAAATGAGTCCGTCAAAAAGTGAGGTTGCAAGTGTCTGTGACGTGGCA 1323
||| |||| |||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1197 AAGGTTGCATCTGAAATGAGTCCGTCAAAAAGTGAGGTTGCAAGTGTCTGTGAAGTAGCA 1256
Query 1324 GAGCCTGTGTCCGTATCTAAAAAGACCAAGAAGAGGAAAAGAGAGAACAAAGGGGAAGAG 1383
||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1257 GAGCCTGTGTCAATATCCAAAAAGAGCAAGAAGAGGAAAAGAGAGAACAAAGGGGAAGGG 1316
Query 1384 CAAGTTAGTACTGTTAACAGAGATGCAGCAGAGACAAGCTTAGCTGGCCCGAGCAGTGAG 1443
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1317 CAAGTTATTACTGTTAACAGAGATGTAGCAGAGACAAGCTTAGCTGGCCCGAGCAGTGAG 1376
Query 1444 AAGAGCTCAAAGAGAGTAAGATTCGCAATGAAGAACAATTTGGTGTGGAAGCCTCATTGC 1503
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 AAAAGCTCAAAGAGAGTAAGATTCGCAATGAAGAACAATTTGGTGTGGAAGCCTCATTGC 1436
Query 1504 CCTCTACCTCCACAAGATTTGAGGTGTCCTCCGTCTGCTACACCAAGAGGAAGTGCTCTG 1563
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1437 CCTCTACCTCCACAAGATTTGAGGTGTCCTCCGTCTGCTACGCCAAGAGGAAGTGCTCTG 1496
Query 1564 AAGCAAGGAATCCCGGCCGGTCCAGTGAGGGAGTTGGC-----A-AGTAGGAAGACGAAG 1617
|||||||||||||| ||||||||||||||||||||||| | |||||||||||||||
Sbjct 1497 AAGCAAGGAATCCCAGCCGGTCCAGTGAGGGAGTTGGCTTCCCAGAGTAGGAAGACGAAG 1556
Query 1618 AAGAAAGTGAAACCCGCTGCTCGTAGAGGAGTGAAGTCTATCAAGAATTTGAAGAAGAAA 1677
|||||||||||||| ||||| ||||||||||||||| | |||||||||||||||||||||
Sbjct 1557 AAGAAAGTGAAACCTGCTGCACGTAGAGGAGTGAAGACGATCAAGAATTTGAAGAAGAAA 1616
Query 1678 TTGTCGCCATGAAAATGGAGTGTCAAGTCGTTT 1710
|||||||||||||||||||||||| |||| |||
Sbjct 1617 TTGTCGCCATGAAAATGGAGTGTCGAGTCATTT 1649
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69705148350
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5