BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G20630.1
Length=890
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941617 jgi|Araly1|941617|scaffold_602161.1 1029 0.0
> Ahg941617 jgi|Araly1|941617|scaffold_602161.1
Length=676
Score = 1029 bits (557), Expect = 0.0
Identities = 635/674 (94%), Gaps = 0/674 (0%)
Strand=Plus/Plus
Query 24 ATAAAACATTCTAAAGAAAAATGAAGATGATAATCCAAATTTTCTTCATCATCTCCCTCA 83
|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATAAAACATTTTAAAGAAAAATGAAGATGATAATCCATATTTTCTTCATCATCTCCCTCG 60
Query 84 TTTCAACCATCTCTTTTGCCTCTGTTCAAGACTTTTGTGTAGCTGACCCAAAGGGTCCTC 143
||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 61 TTTCATCCATCTCTTTTGCCTCTGTTCAAGACTTTTGTGTAGCTGATCCAAATGGTCCTC 120
Query 144 AAAGCCCATCAGGTTACTCTTGCAAGAACCCTGACCAAGTCACCGAAAATGACTTTGCAT 203
|||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 121 AAAGTCCATCAGGGTACTCTTGCAAGAACCCTGACCAGGTCACCGAAAATGACTTTGCAT 180
Query 204 TTACCGGCCTCGGCACAGCTGGAAACACTTCCAACATCATTAAAGCCGCAGTGACTCCAG 263
|| |||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 181 TTTCCGGACTCGGCAAAGCTGGAAACACTTCGAACATCATTAAAGCCGCAGTGACTCCAG 240
Query 264 CCTTTGCTCCTGCTTACGCAGGCATCAATGGCCTTGGCGTATCTCTGGCTCGTCTTGACT 323
||||||| ||||||| || |||| ||||||||||||||| |||||||||||||||||||
Sbjct 241 CCTTTGCGCCTGCTTTTGCGGGCACCAATGGCCTTGGCGTCTCTCTGGCTCGTCTTGACT 300
Query 324 TAGCCGGTGGTGGTGTCATCCCTCTCCACACTCATCCTGGTGCTTCTGAGGTCCTTGTAG 383
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 301 TAGCCGGTGGTGGTGTCATCCCTCTTCACACTCATCCTGGTGCTTCTGAGGCCCTTGTAG 360
Query 384 TCATTCAAGGCACCATTTGCGCCGGATTTATCTCCTCCGCCAACAAAGTTTACTTGAAGA 443
|||| ||||||||||||||||||||||| |||||||| || |||||||| ||||||||||
Sbjct 361 TCATACAAGGCACCATTTGCGCCGGATTCATCTCCTCTGCTAACAAAGTCTACTTGAAGA 420
Query 444 CTCTCAACAGAGGAGATTCTATGGTGTTTCCTCAAGGACTTCTTCATTTTCAGCTAAACT 503
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 421 CTCTCAACAGAGGCGATTCTATGGTGTTTCCTCAAGGGCTTCTTCATTTTCAGCTTAACT 480
Query 504 CTGGGAAAGGCCCTGCCTTGGCCTTTGTCGCATTCGGAAGCTCCTCCCCAGGGCTCCAAA 563
||||||||||||||||||| ||||| ||||| ||||||||||||||||| |||||||| |
Sbjct 481 CTGGGAAAGGCCCTGCCTTAGCCTTCGTCGCCTTCGGAAGCTCCTCCCCGGGGCTCCAGA 540
Query 564 TTCTACCATTTGCTCTGTTTGCAAACGATTTGCCTTCAGAACTTGTTGAAGCCACAACGT 623
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 541 TTCTACCATTTGCTCTGTTTGCAAACGATTTGCCTTCAGAACTCGTTGAAGCCACGACGT 600
Query 624 TCCTTAGCGATGCAGAAGTTAAGAAGCTTAAGGGTGTGCTTGGGGGAACTAATTAAGCTT 683
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 601 TCCTTAGCGATGCAGAAGTTAAGAAGCTTAAGGGTGTGCTTGGAGGAACTAATTAAGCGT 660
Query 684 CTCTTAGTTTCATT 697
|||||| |||||||
Sbjct 661 CTCTTAATTTCATT 674
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32976323205
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5