BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G20635.1
Length=1025
Score E
Sequences producing significant alignments: (Bits) Value
Ahg893998 jgi|Araly1|893998|Al_scaffold_0006_1994 1181 0.0
> Ahg893998 jgi|Araly1|893998|Al_scaffold_0006_1994
Length=750
Score = 1181 bits (639), Expect = 0.0
Identities = 721/759 (95%), Gaps = 12/759 (2%)
Strand=Plus/Plus
Query 169 ATGTCTGCTCCTTCTGGCGGTGGCGAAGGAGGAGGAAAAGAATCAGCTGCTGGTGGAGTG 228
|||||||||||||||||||||| || ||||||||| |||||||||||| |||||||
Sbjct 1 ATGTCTGCTCCTTCTGGCGGTGACGGAGGAGGAGG---AGAATCAGCTGC---TGGAGTG 54
Query 229 AGTTCATCGTCTCTTGCTCCGTCGTCTCTACCACCGCCTCGTCCTAAGTCTCCACCAGAG 288
||||| |||||||||||||||||||||||||| |||||||||||||||||||| || |||
Sbjct 55 AGTTCGTCGTCTCTTGCTCCGTCGTCTCTACCGCCGCCTCGTCCTAAGTCTCCGCCGGAG 114
Query 289 TATCCAGATTTGTACGGGAAACGCAGAGAGGCGGCGAGAGTTCAGATGCTCGAGAGAGAG 348
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 115 TATCCAGATTTGTACGGGAAACGCAGAGAGGCGGCGAGAGTTCAGATGCTCTCGAGAGAG 174
Query 349 ATTGGTTTTCTCGAGGGCGAAATTAAATTCATC-GAAGGCGTACAACCGGCATCTAGATG 407
||||||||||||||||| ||||||||||||| | ||||||||||||||||| ||||||||
Sbjct 175 ATTGGTTTTCTCGAGGGGGAAATTAAATTCA-CTGAAGGCGTACAACCGGCTTCTAGATG 233
Query 408 CAT-CAAAGAAGTCTCTGATTTTGTTGTTGCAAATTCTGACCCATTGATCCCTGCACAAC 466
| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 C-TGCAAAGAGGTCTCTGATTTTGTTGTTGCAAATTCTGACCCATTGATCCCTGCACAAC 292
Query 467 GAAAAAGTCGAAGATCCTT-CCGGTTCTGGAAGTGGCTCTGTGGCCCATGTTTGAGCCTG 525
|||| |||||||||| ||| |||||| ||||||||||| |||||||||||||||||||||
Sbjct 293 GAAAGAGTCGAAGAT-CTTGCCGGTTTTGGAAGTGGCTTTGTGGCCCATGTTTGAGCCTG 351
Query 526 GTGAGTTTCTGCTGTTGCTGCCAATCCAAATGTTCGTGCCATCTGAGGAAACCCAAGTGC 585
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 352 GTGAGTTTCTGCTGTTGCTGCCAATCCAAATGTTCGTGCCATCTGAAGAAACCCAAGTGC 411
Query 586 TGCAACTGTACATCTTGCAGCTGTATAGGGTCCAAATGCTGTGACGGGTCATGCTGCTCA 645
|||||||||||||||||||||||||| |||||||||||||| ||| |||| |||||||||
Sbjct 412 TGCAACTGTACATCTTGCAGCTGTATTGGGTCCAAATGCTGCGACAGGTCGTGCTGCTCA 471
Query 646 AACATTTGTTGTTGCCCGAGACTAAGCTGCCCGAGCTGTTCATGCTTCCGAGGTTGCTGG 705
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 472 AACATTTGTTGTTGCCCGAGACCAAGCTGCCCGAGCTGTTCATGCTTCCGAGGTTGCTGC 531
Query 706 TGTTCTTGTCCGGACATGTCTTGCTGCATTCCCAGCTGTTTCCGCAGTTGCAGTTGCACT 765
||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 532 TGTTCATGTCCGGACATGTCTTGCTGCATTCCCAGCTGTTTCCGCAACTGCAGTTGCACT 591
Query 766 CGACCGTCGTGTCTGAATAAAAAGAAGAGCTCATGCTGCAGCTGCAACTGCAAGATCAGA 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 CGACCGTCGTGTCTGAATAAAAAGAAGAGCTCATGCTGCAGCTGCAACTGCAAGATCAGA 651
Query 826 TGGTCATCTTGTTTTAGTTGTCCCAAGGTACGACTTTGTTCTTGTTGTTTTTGCAATTGT 885
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 TGGTCATCTTGTTTTAGATGTCCCAAGGTACGACTTTGTTCTTGTTGTTTTTGCAATTGT 711
Query 886 AAAAATCTATGTTCTAATCCTTGTTGTTTAGCTTTCTAA 924
|||||||||||||||||||||||||||||||| ||||||
Sbjct 712 AAAAATCTATGTTCTAATCCTTGTTGTTTAGCATTCTAA 750
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38122917000
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5