BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G20640.1 Length=947 Score E Sequences producing significant alignments: (Bits) Value Ahg488969 jgi|Araly1|488969|fgenesh2_kg.6__2103__AT5G20640.1 1077 0.0 > Ahg488969 jgi|Araly1|488969|fgenesh2_kg.6__2103__AT5G20640.1 Length=810 Score = 1077 bits (583), Expect = 0.0 Identities = 753/830 (91%), Gaps = 31/830 (4%) Strand=Plus/Plus Query 95 TATATATAAGGATTAAGAG---GTCAGGCACGAGTGTGTATAGACGTCATGGGTGCGAGA 151 ||||||||||||||||||| |||||||||||||||||||||| || |||||||||||| Sbjct 1 TATATATAAGGATTAAGAGCTCGTCAGGCACGAGTGTGTATAGATGTGATGGGTGCGAGA 60 Query 152 AGCAGCCAGACTGTGGATCCAGTGTTGAGCC-GGAGATACTCATCGGAATCAGAGACAGT 210 |||||||||||||||||||| | | |||||| || |||||||||||||||||||||| || Sbjct 61 AGCAGCCAGACTGTGGATCCGGGGGTGAGCCAGG-GATACTCATCGGAATCAGAGACGGT 119 Query 211 ACTAGTGGTGCGACGACGACCGCCTATGGTGAACGGAGGAGGATTCGTAGTGAGCAATAG 270 || |||||||| |||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 120 GCTGGTGGTGCGGCGACGACCGCATATGGTGAACGGAGGAGGATTCGTAGTGAGCAATAG 179 Query 271 CAAACAAGTAGTAGTATTTAGAGTTGATGGGTGTGGAGTTCTTGGAA-CTAAAGGCAAAC 329 ||||||| || ||| ||||||||| |||| |||||||||||||||| | |||||||| | Sbjct 180 CAAACAACAAGAAGTGTTTAGAGTTCATGGATGTGGAGTTCTTGGAAGC-AAAGGCAAGC 238 Query 330 TTCTCTTGAGAAATGGTGATGGTAATGATTTGCTTCTCATCCGCAAAATGGGAGGAATAG 389 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 239 TTCTATTGAGAAATGGTGATGGTAATGATTTGCTTCTCATCCGCAAAATGGGAGGAATAG 298 Query 390 TGCAGGCACTGAACATGGTACACAACAAATGGGAAGGTTTTGGCTATGACAATGAAGGAA 449 ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct 299 TGCAGGCACTGAACATGGTACACAAGAAATGGGAAGGTTTTGGATATGACAATGAAGGAG 358 Query 450 CAGAGAGGTTAGTTTTCACCTTGAAAGATCCAAAAGATTCATGTCTTGTTCAAAACAGTT 509 ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| Sbjct 359 CAGAGAGGTTAGTTTTCACCTTGAAAGATCCGAAAGATTCATGTCTGGTTCAAAACAGTT 418 Query 510 CAATCAAAATCTTAGTTCACGGTAAACCCCCGAAGATATCATCAACTCGCAACAACTACG 569 |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| | Sbjct 419 CAATCAAAATCTTAGTTCACGGTAAACCGCTGAAGATATCATCAACTCGCAACAACTATG 478 Query 570 TAGAGATCAAAGGCTCTTTTGCAGAGAGAGCTTGTAACATCATGGATTCAGATGGCA-AA 628 ||||||||| ||||||||| ||||||||||||||||||||||| ||||||| |||| || Sbjct 479 TAGAGATCACAGGCTCTTTCGCAGAGAGAGCTTGTAACATCATAAATTCAGAAGGCAGAA 538 Query 629 GCCATAGCTAAGGTGAGAATAGAGAAAGAGATGGAGGAAATGGTGGGGAATAAGAAGGAT 688 ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct 539 -CCATAGCTAAGGTGAGAATAGAGAAAGAGATAGAGGAAATGGTGGGGAACAAGAAGGAT 597 Query 689 CTGTATCATGTAATTGTCAAACCAAATGTGGACCAATCTTTCATCGTCGGTCTCATTGCT 748 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| Sbjct 598 TTGTATCATGTAATTGTCAAACCAAATGTGGACCAAGCTTTCATCGTCGGTCTCATCGCT 657 Query 749 ATACTCGACTATATTCATGGCGAATCTACCATCTGCTAGATCTACTTATC--TCTATCTA 806 || ||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||| Sbjct 658 ATTCTCGACTATATTCATGGCGAATCTACCATCTGCTAAATCTATTTATCACTCTATCTA 717 Query 807 TGTCACTGAATGTGATAACATTAAACCATACCATGTAACAATGGACATTGCAAGTGTTGA 866 |||||| | | | | ||| || | || |||||||||||| ||||||||||||| Sbjct 718 TGTCAC--A--G--A-A-CAT-AA-C-AT-----GTAACAATGGACCTTGCAAGTGTTGA 761 Query 867 AATTTTTGCTTGTAGCTGAAGAATTC-T--GGCTAAATCATAAGAATTCA 913 ||||||||||||| ||| ||||| | |||| ||||||||||| ||| Sbjct 762 G-TTTTTGCTTGTAGATGAGGAATTTATATGGCTCAATCATAAGAACTCA 810 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35149329474 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5