BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G20640.1
Length=947
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488969 jgi|Araly1|488969|fgenesh2_kg.6__2103__AT5G20640.1 1077 0.0
> Ahg488969 jgi|Araly1|488969|fgenesh2_kg.6__2103__AT5G20640.1
Length=810
Score = 1077 bits (583), Expect = 0.0
Identities = 753/830 (91%), Gaps = 31/830 (4%)
Strand=Plus/Plus
Query 95 TATATATAAGGATTAAGAG---GTCAGGCACGAGTGTGTATAGACGTCATGGGTGCGAGA 151
||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||
Sbjct 1 TATATATAAGGATTAAGAGCTCGTCAGGCACGAGTGTGTATAGATGTGATGGGTGCGAGA 60
Query 152 AGCAGCCAGACTGTGGATCCAGTGTTGAGCC-GGAGATACTCATCGGAATCAGAGACAGT 210
|||||||||||||||||||| | | |||||| || |||||||||||||||||||||| ||
Sbjct 61 AGCAGCCAGACTGTGGATCCGGGGGTGAGCCAGG-GATACTCATCGGAATCAGAGACGGT 119
Query 211 ACTAGTGGTGCGACGACGACCGCCTATGGTGAACGGAGGAGGATTCGTAGTGAGCAATAG 270
|| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 120 GCTGGTGGTGCGGCGACGACCGCATATGGTGAACGGAGGAGGATTCGTAGTGAGCAATAG 179
Query 271 CAAACAAGTAGTAGTATTTAGAGTTGATGGGTGTGGAGTTCTTGGAA-CTAAAGGCAAAC 329
||||||| || ||| ||||||||| |||| |||||||||||||||| | |||||||| |
Sbjct 180 CAAACAACAAGAAGTGTTTAGAGTTCATGGATGTGGAGTTCTTGGAAGC-AAAGGCAAGC 238
Query 330 TTCTCTTGAGAAATGGTGATGGTAATGATTTGCTTCTCATCCGCAAAATGGGAGGAATAG 389
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 TTCTATTGAGAAATGGTGATGGTAATGATTTGCTTCTCATCCGCAAAATGGGAGGAATAG 298
Query 390 TGCAGGCACTGAACATGGTACACAACAAATGGGAAGGTTTTGGCTATGACAATGAAGGAA 449
||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 299 TGCAGGCACTGAACATGGTACACAAGAAATGGGAAGGTTTTGGATATGACAATGAAGGAG 358
Query 450 CAGAGAGGTTAGTTTTCACCTTGAAAGATCCAAAAGATTCATGTCTTGTTCAAAACAGTT 509
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 359 CAGAGAGGTTAGTTTTCACCTTGAAAGATCCGAAAGATTCATGTCTGGTTCAAAACAGTT 418
Query 510 CAATCAAAATCTTAGTTCACGGTAAACCCCCGAAGATATCATCAACTCGCAACAACTACG 569
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
Sbjct 419 CAATCAAAATCTTAGTTCACGGTAAACCGCTGAAGATATCATCAACTCGCAACAACTATG 478
Query 570 TAGAGATCAAAGGCTCTTTTGCAGAGAGAGCTTGTAACATCATGGATTCAGATGGCA-AA 628
||||||||| ||||||||| ||||||||||||||||||||||| ||||||| |||| ||
Sbjct 479 TAGAGATCACAGGCTCTTTCGCAGAGAGAGCTTGTAACATCATAAATTCAGAAGGCAGAA 538
Query 629 GCCATAGCTAAGGTGAGAATAGAGAAAGAGATGGAGGAAATGGTGGGGAATAAGAAGGAT 688
||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 539 -CCATAGCTAAGGTGAGAATAGAGAAAGAGATAGAGGAAATGGTGGGGAACAAGAAGGAT 597
Query 689 CTGTATCATGTAATTGTCAAACCAAATGTGGACCAATCTTTCATCGTCGGTCTCATTGCT 748
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 598 TTGTATCATGTAATTGTCAAACCAAATGTGGACCAAGCTTTCATCGTCGGTCTCATCGCT 657
Query 749 ATACTCGACTATATTCATGGCGAATCTACCATCTGCTAGATCTACTTATC--TCTATCTA 806
|| ||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 658 ATTCTCGACTATATTCATGGCGAATCTACCATCTGCTAAATCTATTTATCACTCTATCTA 717
Query 807 TGTCACTGAATGTGATAACATTAAACCATACCATGTAACAATGGACATTGCAAGTGTTGA 866
|||||| | | | | ||| || | || |||||||||||| |||||||||||||
Sbjct 718 TGTCAC--A--G--A-A-CAT-AA-C-AT-----GTAACAATGGACCTTGCAAGTGTTGA 761
Query 867 AATTTTTGCTTGTAGCTGAAGAATTC-T--GGCTAAATCATAAGAATTCA 913
||||||||||||| ||| ||||| | |||| ||||||||||| |||
Sbjct 762 G-TTTTTGCTTGTAGATGAGGAATTTATATGGCTCAATCATAAGAACTCA 810
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35149329474
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5