BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G20650.1

Length=740
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg941620 jgi|Araly1|941620|scaffold_602164.1                        723    0.0  


> Ahg941620 jgi|Araly1|941620|scaffold_602164.1
Length=478

 Score =  723 bits (391),  Expect = 0.0
 Identities = 451/480 (94%), Gaps = 4/480 (1%)
 Strand=Plus/Plus

Query  97   CTCAAATCAAGCTCGCAAAGATGATGCACATGACCTTCTACTGGGGAATCAAAGCCACAA  156
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    CTCAAATCAAGCTCGCAAAGATGATGCACATGACCTTCTACTGGGGAATCAAAGCCACAA  60

Query  157  TTCTCTTCGATTTCTGGAAAACTGACTCATGGCTTAGTTACATCCTCACTTTAATCGCTT  216
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  61   TTCTCTTCGATTTCTGGAAAACTGACTCATGGCTCAGTTACATCCTCACTTTAATCGCTT  120

Query  217  GCTTCGTCTTCTCCGCTTTCTATCAATACCTCGAGAATCGCCGCATCCAATTCAAATCCC  276
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  GCTTCGTCTTCTCCGCTTTCTATCAATACCTCGAGAATCGCCGCATCCAATTCAAATCCC  180

Query  277  TTTCTTCCTCCCGTCGTGCTCCTCCACCGCCTCGCTCTTCCTCCGGCGTCTCCGCGCCTC  336
            |||| || ||||||||| | | |||||||||||||||||||||||||||||| || ||||
Sbjct  181  TTTCCTCTTCCCGTCGT-C-C-TCCACCGCCTCGCTCTTCCTCCGGCGTCTCTGCTCCTC  237

Query  337  TTATCCCTAAATCCGGTACCAGATCCGCCGCTAAAGCTGCTTCGGTTCTTCTTTTCGGCG  396
            ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct  238  TTATCCCCAAATCCGGTACCAGATCCGCCGCTAAAGCTGCTTCGGTGCTTCTTTTCGGTG  297

Query  397  TCAACGCAGCGATCGGTTACTTGCTGATGCTTGCAGCTATGTCTTTCAACGGAGGTGTTT  456
            ||||||| |||||||| ||||||||||||||||| |||||||| ||||||||||| ||||
Sbjct  298  TCAACGCTGCGATCGGGTACTTGCTGATGCTTGCTGCTATGTCCTTCAACGGAGGCGTTT  357

Query  457  TCATCGCGATTGTCGTCGGATTAACCGCCGGATACGCTGTTTTTAGATCTGATGACGGCG  516
            |||||||||||||||||||||| || || |||||||| ||||| ||||||||||||||||
Sbjct  358  TCATCGCGATTGTCGTCGGATTGACTGCTGGATACGCCGTTTTCAGATCTGATGACGGCG  417

Query  517  GTGCTGATACCGCCACGGATGATCCATGTCCATGTGCTTGA-TAATGATTGATAATaaaa  575
            ||||||||| ||| |||||||||||||| |||||||||||| |  |||||| | ||||||
Sbjct  418  GTGCTGATATCGCGACGGATGATCCATGCCCATGTGCTTGAATCTTGATTGGTGATAAAA  477



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27257885655


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5