BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G20670.1
Length=760
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488972 jgi|Araly1|488972|fgenesh2_kg.6__2106__AT5G20670.1 896 0.0
> Ahg488972 jgi|Araly1|488972|fgenesh2_kg.6__2106__AT5G20670.1
Length=613
Score = 896 bits (485), Expect = 0.0
Identities = 588/634 (93%), Gaps = 22/634 (3%)
Strand=Plus/Plus
Query 10 AACCTTAAAGCCAGAGACTCGTAACAGAAAATTTTATTAGTCTCTCAATCTCATTTTCCA 69
||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 1 AACCTTAAAGCCAGAGA--CGTAACAGAGAATTTTATTAGTCTCTCAATCTCATTTTCCA 58
Query 70 CAAAACAAatcatgtcatcatcatcatcatcGTCAGCCACCGATACTAACACAAAGCCAT 129
||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||| |
Sbjct 59 CAAAACAAATCATGTCATCATCATCATCATCATCAGCCACCGATATTAACGCAAAGCCGT 118
Query 130 CGTCTTCGTTGCCGGCGGTGGAGTCTGTCACGTGCGACACGTGCGGTTTCGCTGAAGAGT 189
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 CGTCGTCGTTGCCGGCGGTGGAGTCTGTCACGTGCGACACGTGCGGTTTCGCTGAAGAGT 178
Query 190 GTACGCCAGCTTACATCAACCGTGTCAAAGAACGGCATAAGGGACACTGGCTTTGTGGGC 249
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 179 GTACGCCGGCTTACATCAACCGTGTCAAAGAACGGCACAAGGGACACTGGCTTTGTGGGC 238
Query 250 TTTGTGCGGAAGCGGTAAAAGACGAGGTGGTTCGATCTTCCACTCGTATCTCCGTCGAGG 309
|||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 239 TTTGCGCGGAGGCGGTAAAAGACGAGGTGGTTCGATCTTCGACTCGTATCTCCGTCGAGG 298
Query 310 AGGCTCTCCGCCGTCACACGACGTTTTGCCACCGTTTCCGTTCTTGGAGTCCC-GATGAA 368
| |||||||| |||||||||||||||||||||||||||||||||||||| ||| || ||
Sbjct 299 AAGCTCTCCGTCGTCACACGACGTTTTGCCACCGTTTCCGTTCTTGGAG-CCCTGACGAG 357
Query 369 GAGGAAGATCCGATATCCGTCATTGGTAGGATTCTACGGCGGAGTCTTGATGGCTCTCCA 428
|||||||||||||||||||||||||||||||||||||||||||| || || |||||||||
Sbjct 358 GAGGAAGATCCGATATCCGTCATTGGTAGGATTCTACGGCGGAGCCTCGACGGCTCTCCA 417
Query 429 CGGAGAACCAATACGAGGACAAGCTCGAGTGGAGCTTTGCCGGGGATCGACGGCGTAGAG 488
|||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 418 CGGAGAACCACTACGAGGACAAGCTCGAGCGGAGCTTTGCCGGGGATCGACGGTGTAGAG 477
Query 489 TCACGACGGTCGCTTCTCCGATCTGGGAGTTGTTTCCCGTCTCTCTCTGCTTGATCAATA 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 478 TCACGACGGTCGCTTCTCCGATCTGGGAGTTGTTTCCCGTCTCTCTCTGCTTGAT---T- 533
Query 549 ATCTTGTTAGtttttgtaaatttgttttttacttttttggtttaagattatttgcatcat 608
| | || | || |||||||| || ||||||| ||||||||||||||||||||
Sbjct 534 -T-T-GT-A--------AA-TTTGTTTTATATTTTTTTG-TTTAAGATTATTTGCATCAT 579
Query 609 tttaGAAGGTGAAGAAAGAGTTGGAATCCGAGGA 642
||||||||| ||||||||||||||||||||||||
Sbjct 580 TTTAGAAGGAGAAGAAAGAGTTGGAATCCGAGGA 613
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28020343995
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5