BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G20680.1
Length=2385
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941624 jgi|Araly1|941624|scaffold_602168.1 2691 0.0
> Ahg941624 jgi|Araly1|941624|scaffold_602168.1
Length=1708
Score = 2691 bits (1457), Expect = 0.0
Identities = 1623/1703 (95%), Gaps = 12/1703 (1%)
Strand=Plus/Plus
Query 396 GACATATGCCTTGATCTAGTATGAACGAAACTTTCTCTGCAACGCCAAGAAGCATGACCA 455
|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1 GACATATGCCTTGATCTAGTATGAACGAAAGTTTCTCTGGAACGCCAAGAAGCATGACCC 60
Query 456 TCCATAGATATAGGATGAAAAGAGGAGCCCTTAGACGAAGGGCTAGGGATATCTCTGTTA 515
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCCATAGAAATAGGATGAAAAGAGGAGCCCTTAGACGAAGGGCTAGGGATATCTCTGTTA 120
Query 516 TGCTTGTTGTACTTGTTTGTGCAACTGTAGTCATATGGACATGGGATAGAACTCCAACCT 575
|||||||||| |||||||||||||| || ||||||||||||||||||| |||||||||||
Sbjct 121 TGCTTGTTGTGCTTGTTTGTGCAACCGTCGTCATATGGACATGGGATAAAACTCCAACCT 180
Query 576 CGGCCTTTCTTCCACCTGAAAGTCACTATCTAAAGCTGCAATCAGAAGAAAAGGTTGAGA 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CGGCCTTTCTTCCACCTGAAAGTCACTATCTAAAGCTGCAATCAGAAGAAAAGGTTGAGA 240
Query 636 AATTACCTACTGCGCTGAATACTGAAACTAAAGACAGCTACTCATCAGCTATTCCATTTG 695
| |||||||||| |||||||||||||||||||||| ||| |||| ||||| ||||||||
Sbjct 241 GACTACCTACTGCACTGAATACTGAAACTAAAGACATCTATTCATTAGCTACTCCATTTG 300
Query 696 TAAACAAAGAGGAAAGCAAAGAGGATTCATCCGATAATAAAGATACAGAAGAAGAAGAGG 755
|||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 301 TAAACAAAGAGGGAAGCAAAGAGGATTCACCCGATAATAAAGATACAGAAGAAGAAGAAG 360
Query 756 AGAAACAAGTGGAAGAAGTTACTGTAAGTAATACGAATCGAGGGAAGATACCAACGATT- 814
|||||||||||||||||| |||||||||| ||| ||||| ||| |||| |||||| |||
Sbjct 361 AGAAACAAGTGGAAGAAGCTACTGTAAGTGATATGAATCAAGGAAAGACACCAACTATTG 420
Query 815 GA-AGaaaaaa--aG-----GGGGAACATGAAGTTATTGCAAGTGAGCCAAAATATCGGA 866
|| |||||||| || | ||||||||||||||||||||||||||||||||||| ||
Sbjct 421 GAGAGAAAAAAGTAGAACAAGTGGAACATGAAGTTATTGCAAGTGAGCCAAAATATCAGA 480
Query 867 AGACGCCAACTAGAGAAGATTTTAAATTAGAAAAGGTGAAACATGAGGTTGCTGTTGGTG 926
|||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||
Sbjct 481 AGACGCCAACTAGAGAGGAAATTAAATTAGAAAAGGTGAAACATGAGGTTGCTATTGGTG 540
Query 927 AGGGCGAAGCTACGGAGACAACACATATTAAAGAGACTAATTCAGATCCAAAGAGTAATA 986
| |||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 541 ATGGCGAAGCTAAGAAGACAACACATATTAAAGAGACTAATTCAGATCCAGAGAGTAATA 600
Query 987 TTCTTGCAACAGACGAAGAGAGGACTGAT-G--GTACTTCAACAGCTCGCATCACGAATC 1043
||||||||||||| ||||||||||||||| | ||||||| |||||||||||||||||||
Sbjct 601 TTCTTGCAACAGATGAAGAGAGGACTGATGGTAGTACTTCCACAGCTCGCATCACGAATC 660
Query 1044 AAGCTTGCAATTATGCGAAAGGGAAATGGGTTGTGGACAATCACCGTCCTTTGTATTCAG 1103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AAGCTTGCAATTATGCGAAAGGGAAATGGGTTGTGGACAATCACCGTCCTTTGTATTCAG 720
Query 1104 GATCTCAATGCAAACAGTGGCTTGCTTCAATGTGGGCATGCAGGTTGATGCAACGTACAG 1163
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 721 GATCTCAATGCAAACAGTGGCTTGCTTCAATGTGGGCGTGCAGGTTGATGCAACGTACAG 780
Query 1164 ACTTTGCCTTTGAAAGTTTAAGATGGCAACCTAAAGATTGCTCTATGGAAGAATTTGAGG 1223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 ACTTTGCCTTTGAAAGTTTAAGATGGCAACCTAAAGATTGCTCTATGGAAGAATTTGAGG 840
Query 1224 GTTCCAAGTTCTTGAGAAGGATGAAGAACAAAACCCTAGCCTTTGTTGGAGACTCGTTGG 1283
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GTTCCAAGTTCCTGAGAAGGATGAAGAACAAAACCCTAGCCTTTGTTGGAGACTCGTTGG 900
Query 1284 GAAGACAACAGTTTCAGTCTATGATGTGTATGATCTCGGGAGGCAAAGAGAGACTCGATG 1343
|||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||
Sbjct 901 GAAGACAACAGTTTCAATCTATGATGTGTATGATCACGGGAGGCAAAGAGAGGCTCGATG 960
Query 1344 TCCTTGATGTGGGACCAGAATTTGGGTTCATAACTCCCGAAGGTGGAGCTCGTCCTGGTG 1403
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 961 TCCTTGATGTGGGACCAGAATTTGGGTTCATAACTTCCGAAGGTGGAGCTCGTCCTGGTG 1020
Query 1404 GTTGGGCTTACAGATTCCCAGAAACTAACACAACGGTCCTATACCACTGGTCATCTACAC 1463
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 GCTGGGCTTACAGGTTCCCAGAAACTAACACAACGGTCCTATACCACTGGTCATCTACAC 1080
Query 1464 TGTGCGACATAGAACCGCTCAACATCACTGACCCCGCAACTGAACACGCTATGCATCTTG 1523
| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
Sbjct 1081 TCTGCGACATAGAACCGCTCAACATCACTGACCCCGCAACTGAAAATGCTATGCATCTCG 1140
Query 1524 ATCGCCCACCAGCGTTTTTACGCCAATACCTTCAAAAGATCGACGTATTGGTAATGAACA 1583
|||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||
Sbjct 1141 ATCGCCCACCAGCGTTTTTACGCCAATACCTTCATAAGATCAACGTCTTGGTAATGAACA 1200
Query 1584 CAGGTCACCATTGGAACCGCGGGAAGCTCAACGGGAACAAATGGGTGATGCATGTTAATG 1643
||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||
Sbjct 1201 CAGGTCACCATTGGAACCGAGGGAAGCTCAACGGTAACAGATGGGTGATGCATGTTAATG 1260
Query 1644 GCGTTCCCAACACTAACAGGAAGTTAGCTGCTCTTGGGAACGCCAAGAATTTCACAATCC 1703
|||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||
Sbjct 1261 GCGTTCCCAACACTAACAAGAAGCTAGCCGCTCTTGGGAACGCCAAGAATTTCACAATCC 1320
Query 1704 ACAGCACAGTTAGTTGGGTTAACTCACAACTCCCTCTCCATCCCGGTCTCAAGGCATTCT 1763
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1321 ACAGCACAGTTAGTTGGGTTAACTCGCAACTCCCTCTCCATCCCGGTCTCAAGGCATTCT 1380
Query 1764 ACAGAAGCCTTTCACCGAGACATTTCGTGGGTGGGGAATGGAACACCGGAGGGAGCTGCA 1823
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1381 ACAGAAGCCTTTCACCGAGACATTTCGTGGGCGGGGAATGGAACACCGGAGGGAGCTGCA 1440
Query 1824 ATAACACAACCCCAATGTCTATCGGGAAAGAAGTTTTGCAAGAGGAGTCAAGCGACTACA 1883
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1441 ATAACACAACCCCAATGTCTATCGGGAAAGAAGTTTTGCAAGAGGAGTCAAGCGATTACA 1500
Query 1884 GCGCGGGTCGTGCAGTGAAAGGTACAGGGGTTAAGCTTTTAGACATAACAGCCTTATCTC 1943
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1501 GTGCGGGTCGTGCAGTGAAAGGTACAGGGGTTAAGCTTTTGGACATAACAGCCTTATCTC 1560
Query 1944 ATATTAGAGACGAAGGTCACATATCACGGTTCAGTATCTCGGCTTCACGGGGAGTTCAGG 2003
|||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||
Sbjct 1561 ATATTAGAGACGAAGGTCACATATCACGGTTCAGTATCTCGGCTGCTCCGGGAGTTCAGG 1620
Query 2004 ATTGCCTCCATTGGTGCTTGCCCGGTGTTCCTGATACGTGGAATGAAATCCTTTTTGCAA 2063
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1621 ATTGCCTCCATTGGTGCTTGCCCGGTGTTCCTGATACATGGAACGAAATCCTTTTTGCAA 1680
Query 2064 TGATCTAAGTTTTCAAGTTACAG 2086
|||||||||||||||||||||||
Sbjct 1681 TGATCTAAGTTTTCAAGTTACAG 1703
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89854887955
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5