BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G20690.1
Length=1980
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488975 jgi|Araly1|488975|fgenesh2_kg.6__2109__AT5G20690.1 2833 0.0
Ahg347421 jgi|Araly1|347421|fgenesh1_pg.C_scaffold_5000813 344 1e-93
> Ahg488975 jgi|Araly1|488975|fgenesh2_kg.6__2109__AT5G20690.1
Length=1959
Score = 2833 bits (1534), Expect = 0.0
Identities = 1824/1962 (93%), Gaps = 28/1962 (1%)
Strand=Plus/Plus
Query 21 TCCCGGTTTCTTTCTCCTCATCCTCCTCTTATCTTTCTCAATCTCCCCTTCTTTGCAGTA 80
|||||||||||| ||||||||||||||||| | ||| ||||||||||||||||||||| |
Sbjct 12 TCCCGGTTTCTTCCTCCTCATCCTCCTCTTCTGTTTTTCAATCTCCCCTTCTTTGCAGCA 71
Query 81 TGTGAGCGAGTCCGAACCGCTTGTGCGGTTCAAAAACTCGGTGAAGATAACCAAAGGGGA 140
|||||||||||||||||||||||||| ||||| | ||||||||| ||||||||||||||
Sbjct 72 CGTGAGCGAGTCCGAACCGCTTGTGCGCTTCAAGAGCTCGGTGAATATAACCAAAGGGGA 131
Query 141 CCTAAATTCATGGAGAGAAGGGACAGATCCTTGCAGTGGGAAATGGTTTGGGATCTATTG 200
|||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||
Sbjct 132 CCTAAATTCATGGAGATTAGGAACAGATCCTTGCAGTGGGAAATGGTTCGGGATCTATTG 191
Query 201 CCAAAAGGGTCTAACAGTCTCAGGCATTCACGTCACACGTCTAGGTCTCTCAGGAACCAT 260
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 192 CCAAAAGGGTCTAACAGTCTCAGGCATTCACGTCACACGGCTTGGTCTCTCAGGAACCAT 251
Query 261 CACCGTGGATGATTTAAAGGATCTCCCAAATCTAAAGACGATCAGGCTTGACAACAACCT 320
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 252 CACCGTCGATGATTTAAAGGATCTCCCAAATCTTAAGACGATCAGGCTTGACAACAATCT 311
Query 321 CCTCTCCGGTCCTCTCCCGCATTTCTTTAAACTCCGTGGCCTAAAATCTCTCATGCTCTC 380
|||||| |||||||||||||||||||| |||||||| |||||||| ||||||||||||||
Sbjct 312 CCTCTCTGGTCCTCTCCCGCATTTCTTCAAACTCCGAGGCCTAAAGTCTCTCATGCTCTC 371
Query 381 TAACAACAGCTTCTCCGGAGAGATCCGTGACGATTTTTTCAAGGACATGTCAAAGCTCAA 440
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 372 TAACAACAGCTTCTCCGGCGAGATCCGTGACGATTTTTTCAAGGACATGTCAAAGCTCAA 431
Query 441 GCGACTATTTCTTGATCATAACAAGTTCGAGGGAAGTATCCCTTCCTCCATTACGCAGCT 500
|||||||||||||||||||||||| ||| |||||| |||||||||||||||||| |||||
Sbjct 432 GCGACTATTTCTTGATCATAACAAATTCCAGGGAAATATCCCTTCCTCCATTACACAGCT 491
Query 501 CCCTCAACTCGAGGAGCTTCACATGCAAAGTAATAACCTCACCGGAGAGATACCTCCAGA 560
|||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||
Sbjct 492 CCCTCAACTCGAGGAGCTTCACCTTCAAAGTAATAACTTCACCGGAGAGATACCTCCAGA 551
Query 561 GTTTGGCAGCATGAAGAACCTTAAAGTCCTCGACCTCTCAACCAA-CAGCCTCGATGGAA 619
| | |||| ||| |||||||||||||||||||||||||||||||| || ||||| ||||
Sbjct 552 GATCGGCAACATTAAGAACCTTAAAGTCCTCGACCTCTCAACCAACCA-ACTCGAAGGAA 610
Query 620 TCGTCCCGCAAAGCATTGCGGATAAGAAAAATCTCGCTGTTAATTTGACAGAGAACGAAT 679
||||||| ||||||| || |||| ||||||||||| || ||||||||||| |||||||
Sbjct 611 CCGTCCCGGAAAGCATCGCCGATAGGAAAAATCTCGTTGCGAATTTGACAGAAAACGAAT 670
Query 680 ACTTGTGCGGGCCGGTGGTGGACGTTGGATGTGAGAATATTGAGCTAAACGATCCGCAAG 739
||||||||||| || || | ||||||| ||||||| ||||| | |||| ||| | |
Sbjct 671 ACTTGTGCGGGGCGTTGATAGACGTTGAATGTGAGGATATTAACCTAAGCGA--AG-GGG 727
Query 740 AAGGACAACCCCCGTCGAAACCATCC-TCCTCGGTACCAGAAACCTCGAACAAGGCCGCA 798
|||||| | ||| |||| || || ||||||||||| |||||||||||| |||| |
Sbjct 728 AAGGAC-ATAACCG--GAAAGCA-CCAACCTCGGTACCACAAACCTCGAACACGGCCACG 783
Query 799 ATAAACGCAATCATGGTGTCGATATCGCTTCTTCTCCTGTTCTTTATTATTGTTGGCGTT 858
|| |||||||| |||||||||| |||||||||||| |||||||||||||||| || ||
Sbjct 784 GTACACGCAATCTTGGTGTCGATCTCGCTTCTTCTCATGTTCTTTATTATTGTGGGAATT 843
Query 859 ATAAAGAGGCGAAATAAGAAGAAGAACCCTGACTTTAGAATGCTCGCCAA-CAACCGTGA 917
|||| || |||||||||||||||||||||||||||| ||||||||| ||| ||| || |
Sbjct 844 ATAAGGAAGCGAAATAAGAAGAAGAACCCTGACTTTCGAATGCTCGACAACCAA-CG-CA 901
Query 918 A-AACGATGTTGTGGAAGTCAGGATATCCGAGTCTTCATCCACGACCGCCAAAAGGTCTA 976
| ||||||| ||||||||||||||||||||| ||||||||||||||||| ||||| ||||
Sbjct 902 ACAACGATGCTGTGGAAGTCAGGATATCCGAATCTTCATCCACGACCGCGAAAAGATCTA 961
Query 977 CAGATTCAAGCAGGAAGCGCGGTGGGCACT-CGGATGACGGTTCCACCAAGAAAGG-TGT 1034
|||||||||||||||||||||||||||| | |||||| ||||||| |||||||||| | |
Sbjct 962 CAGATTCAAGCAGGAAGCGCGGTGGGCA-TGCGGATGGCGGTTCCTCCAAGAAAGGCT-T 1019
Query 1035 GTCGAATATTGGTAAAGGTGGTAACGGAGGAGGAGGAGGAGCTCTAGGCGGTGGTATGGG 1094
||||||||||||||||||||||||| |||||||||||||||||||| || |||||
Sbjct 1020 GTCGAATATTGGTAAAGGTGGTAAC------GGAGGAGGAGCTCTAGGCGGCGGGATGGG 1073
Query 1095 TGACATTATTATGGTGAATACCGACAAA-GGTTCCTTCGGTTTACCCGATCTGATGAAGG 1153
||||||||| ||||||||||| || ||| |||||||| ||||||||||||||||||||||
Sbjct 1074 TGACATTATAATGGTGAATACGGA-AAAGGGTTCCTTTGGTTTACCCGATCTGATGAAGG 1132
Query 1154 CTGCAGCCGAGGTGCTTGGCAACGGTAGCCTTGGATCAGCTTACAAGGCGGTGATGACCA 1213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1133 CTGCAGCCGAGGTGCTTGGCAACGGTAGCCTTGGATCAGCTTACAAGGCGGTGATGACCA 1192
Query 1214 CTGGATTATCCGTTGTGGTGAAAAGGATTAGGGATATGAATCAACTTGCACGTGAACCTT 1273
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1193 CTGGATTATCCGTTGTGGTGAAGAGGATTAGGGATATGAATCAACTTGCACGCGAACCTT 1252
Query 1274 TCGATGTCGAGATGAGACGATTCGGGAAACTCCGCCACCCTAACATT-TTGACCCCTTTA 1332
||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||
Sbjct 1253 TCGATGTCGAGATGAGACGATTCGGGAAACTCCACCACCCTAACATTCTT-ACCCCTTTA 1311
Query 1333 GCCTATCACTACCGCCGCGAAGAGAAGCTTGTAGTCTCCGAATACATGCCTAAAAGCAGC 1392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1312 GCCTATCACTACCGCCGCGAAGAGAAGCTTGTAGTCTCCGAATACATGCCTAAAAGCAGC 1371
Query 1393 TTGCTTTACGTTTTACATGGAGATCGTGGGATATACCATTCCGAGCTAACTTGGGCAACA 1452
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1372 TTGCTTTACGTTTTACATGGTGATCGTGGGATATATCATTCCGAGCTAACTTGGGCAACA 1431
Query 1453 AGATTGAAGATCATCCAAGGAGTGGCTCACGGAATGAAGTTCTTGCACGAGGAGTTTGCG 1512
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1432 AGATTGAAGATCATCCAAGGAGTGGCTCACGGAATGAAGTTCTTGCACGGGGAGTTTGCG 1491
Query 1513 TCTTATGATCTACCACACGGTAACCTCAAATCCAGCAATGTTCTCCTCAGCGAGACCTAC 1572
|| || ||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1492 TCCTACGATCTCCCACACGGTAACCTCAAATCCAGCAACGTTCTCCTCAGCGAGACCTAT 1551
Query 1573 GAGCCTTTGATCAGTGATTACGCATTCTTACCGCTTCTCCAACCAAGCAACGCATCGCAA 1632
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1552 GAGCCTTTGATCAGCGATTACGCGTTCTTACCGCTTCTCCAACCAAGCAACGCATCGCAA 1611
Query 1633 GCATTGTTTGCTTTCAAGACTCCCGAGTTCGCGCAGACACAACAGGTCTCGCATAAATCA 1692
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1612 GCATTGTTTGCTTTCAAGACGCCCGAGTTCGCGCAGACACAACAGGTCTCTCATAAATCA 1671
Query 1693 GACGTCTACTGCCTCGGAATTATAATTCTAGAGATCTTGACGGGGAAATTCCCTTCTCAA 1752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1672 GACGTCTACTGCCTCGGAATTATAATTCTAGAGATCTTGACGGGGAAATTCCCTTCTCAA 1731
Query 1753 TACTTAAACAACGGTAAAGGCGGGACGGATATAGTACAATGGGTACAATCTTCGGTTGCG 1812
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||
Sbjct 1732 TACTTAAACAACGGTAAAGGCGGGACTGATATAGTTCAATGGGTACAATCTTCGGTTTCG 1791
Query 1813 GAGCAAAAAGAAGAAGAACTTATCGATCCGGAGATAGTAAACAATACTGAATCAATGCGA 1872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1792 GAGCAAAAAGAAGAAGAACTTATCGATCCGGAGATAGTAAACAATACTGAATCAATGCGA 1851
Query 1873 CAGATGGTGGAATTGTTGCGGGTTGGGGCTGCTTGTATCGCAAGTAATCCAGATGAGAGA 1932
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1852 CAGATGGTGGAATTGTTGCGGGTTGGGGCTGCTTGTATCGCAAGTAATCCAGATGAGAGA 1911
Query 1933 TTAGACATGAGGGAAGCTGTTAGAAGGATAGAACAAGTAAAA 1974
||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1912 TTAGACATGAGGGAAACTGTTAGAAGGATAGAACAAGTAAAA 1953
> Ahg347421 jgi|Araly1|347421|fgenesh1_pg.C_scaffold_5000813
Length=1902
Score = 344 bits (186), Expect = 1e-93
Identities = 402/506 (79%), Gaps = 16/506 (3%)
Strand=Plus/Plus
Query 31 TTTCTCCT-CATCCTCCTCTTATCTTTCTCAATCTCCCCTTCTTTGCAGTATGTGAGCGA 89
||||| || | |||| ||| | | |||||| || ||||||||||||| | || || ||
Sbjct 16 TTTCT-CTGCTTCCTTCTCCTCTGTTTCTCCTTCACCCCTTCTTTGCAAAACGTCAGTGA 74
Query 90 GTCCGAACCGCTTGTGCGGTTCAAAAACTCGGTGAAGATAACCAAAGGGGACCTAAATTC 149
||||||||||| ||||||||||| | ||||||||| ||||| ||||| || | |||||
Sbjct 75 ATCCGAACCGCTCGTGCGGTTCAAGAGCTCGGTGAATATAACTAAAGGAGATTTGAATTC 134
Query 150 ATGGAGAGA-AGGGACAGATCCTTGCAGTGGGAAATGGTTTGGGATCTATTGCCAAAAGG 208
||||||| | ||| || |||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 135 ATGGAGA-ACAGGAACCGATCCTTGCAATGGAAAATGGTTTGGGATCTATTGCCAAAAGG 193
Query 209 GTCTAACAGTCTCAGGCATTCACGTCACACGTCTAGGTCTCTCAGGAACCATCACCGTGG 268
| | ||||||||| |||||||||||||| || || |||||||| || ||||||| | | |
Sbjct 194 GCCAAACAGTCTCGGGCATTCACGTCACCCGGCTTGGTCTCTCCGGGACCATCAACATCG 253
Query 269 ATGATTTAAAGGATCTCCCAAATCTAAAGACGATCAGGCTTGACAACAACCTCCTCTCCG 328
| |||||||||||||| |||||||||| ||||||||||||||||||||| || ||||| |
Sbjct 254 AGGATTTAAAGGATCTTCCAAATCTAAGGACGATCAGGCTTGACAACAATCTTCTCTCAG 313
Query 329 GTCCTCTCCCGCATTTCTTTA-AA-CT-CCGTGGCCTAAAATCTCTCATGCTCTCTAACA 385
| || ||||| | ||| || | || || || ||| | |||||||| ||||||| ||||
Sbjct 314 GCCCACTCCCTCCTTT-TT-ACAAGCTTCCA-GGCTTGAAATCTCTTTTGCTCTCAAACA 370
Query 386 ACAGCTTCTCCGGAGAGATC-CGTGACGATTTTTTCAAGGACATGTCA-AAGCTCAAGCG 443
| ||||| ||||| ||||| | ||| ||||| |||||||| | | || || ||||||||
Sbjct 371 ATAGCTTTTCCGGCGAGATTGC-TGATGATTTCTTCAAGGAAACGCCACAA-CTCAAGCG 428
Query 444 ACTATTTCTTGATCATAACAAGTTCGAGGGAAGTATCCCTTCCTCCATT-ACGCAGCTCC 502
| ||||| ||| | ||| ||| |||| ||||| | || || | ||| |||
Sbjct 429 GGTTTTTCTCGATAACAACCGGTTATCCGGAAAAATCCCCGCTTCT-TTGATGCAACTCG 487
Query 503 CTCAACTCGAGGAGCTTCACATGCAA 528
| |||||||||||||||||||||
Sbjct 488 CAGGTCTCGAGGAGCTTCACATGCAA 513
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74428338730
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5