BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G20720.1
Length=975
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488978 jgi|Araly1|488978|fgenesh2_kg.6__2112__AT5G20720.2 1483 0.0
> Ahg488978 jgi|Araly1|488978|fgenesh2_kg.6__2112__AT5G20720.2
Length=924
Score = 1483 bits (803), Expect = 0.0
Identities = 899/942 (95%), Gaps = 19/942 (2%)
Strand=Plus/Plus
Query 7 TCTAACTCTCTCTCTACTGCAATTTTTAGGGTTTTATCCTCCGAAAGTCTCAACCTTTTT 66
|||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 2 TCTATCTCTCTCTCTACTGCAGTTTTTAGGGTTTTATCCTCCGAAAG------------- 48
Query 67 CTTATCCTCAACAAGGAGAAATGGCGGCGACTCAACTTACAGCGTCACCAGTGACTATGT 126
|||||||| | | ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 49 --TATCCTCAGC-A--AGAAATGGCGGCGACTCAACTTACAGCATCACCAGTGACTATGT 103
Query 127 CAGCAAGGAGCTTAGCCTCGCTGGATGGTCTCAGAGCTTCGAGTGTCAAGTTTTCATCTT 186
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 104 CAGCAAGGAGCTTAGCCTCGCTGGATGGTCTAAGAGCTTCAAGTGTCAAGTTTTCATCTT 163
Query 187 TGAAACCAGGGACCCTTAGACAGAGCCAGTTCCGTCGTTTGGTTGTCAAAGCTGCTTCTG 246
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 164 TGAAACCAGGGACCCTTAGGCAGAGCCAGTTCCGTCGTTTGGTTGTCAAAGCTGCTTCTG 223
Query 247 TTGTTGCCCCTAAGTATACTTCAATTAAGCCATTGGGAGATCGAGTTTTGGTGAAGATCA 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 224 TTGTTGCCCCTAAGTATACTTCAATTAAGCCATTGGGAGATCGAGTTTTGGTGAAGATCA 283
Query 307 AGGAGGCAGAGGAGAAGACTTTAGGTGGTATCTTACTTCCATCCACTGCTCAATCAAAAC 366
||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 284 AGGAGGCAGAGGAAAAGACTTTAGGAGGTATCTTACTACCATCCACTGCTCAATCAAAAC 343
Query 367 CTCAAGGAGGTGAAGTCGTTGCCGTGGGTGAAGGAAGAACTATTGGGAAGAACAAAATTG 426
|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct 344 CTCAAGGAGGTGAAGTCGTTGCTGTGGGTGAAGGAAGAACAATTGGGAAGAACAAAATCG 403
Query 427 ATATCACTGTCCCTACTGGAGCACAAATTATCTACTCCAAATACGCAGGAACTGAGGTGG 486
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 404 ATATCACTGTCCCTACTGGAGCACAAATTATTTACTCCAAATACGCAGGAACTGAGGTGG 463
Query 487 AGTTCAATGATGTGAAGCATCTTATCCTCAAGGAAGATGATATTGTTGGCATTCTTGAGA 546
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 464 AGTTCAATGATGTGAAGCATCTCATTCTCAAGGAAGATGATATTGTTGGCATTCTTGAGA 523
Query 547 CAGAGGACATCAAAGATCTCAAACCTTTGAATGACCGAGTCTTTATTAAGGTTGCTGAGG 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 524 CAGAGGACATCAAAGATCTCAAACCTTTGAATGACCGAGTCTTTATTAAGGTTGCTGAGG 583
Query 607 CGGAGGAGAAAACAGCTGGAGGGTTGTTGTTAACCGAGACTACCAAAGAGAAGCCTTCTA 666
| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 584 CAGAGGAGAAAACAGCTGGAGGGTTGTTGTTAACCGAGACTACTAAAGAAAAGCCTTCTA 643
Query 667 TTGGCACGGTGATAGCAGTTGGACCGGGTTCCCTAGACGAGGAAGGTAAAATTACGCCTC 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 644 TTGGCACGGTGATAGCAGTTGGACCGGGTTCCCTAGACGAGGAAGGTAAAATTACTCCTC 703
Query 727 TACCAGTATCAACCGGAAGCACAGTACTTTACTCCAAGTATGCTGGTAACGACTTCAAGG 786
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 704 TACCAGTATCGACCGGAAGCACAGTTCTTTACTCCAAGTATGCTGGTAACGACTTCAAGG 763
Query 787 GCAAAGATGGTTCCAACTACATTGCCCTCAGAGCTTCAGATGTGATGGCTATACTTTCTT 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 764 GCAAAGATGGTTCCAACTACATTGCCCTCAGAGCTTCAGATGTGATGGCTATACTTTCTT 823
Query 847 AGTTATGTTATATCTTTGTAATCTGCAACTTGTATCCCAATTGTGGAAATTTTTTCCGTA 906
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 824 AGTTATGTCATATCTTTGTAATCTGCAACTTGTATCCCAATTGTGGAAATTTTTTC-GTA 882
Query 907 AACGGCCTGAGCATAATCTGGAATAAAGACTTGAGTTTGAAA 948
||||||||||||||||||||||||||||||||||||| ||||
Sbjct 883 AACGGCCTGAGCATAATCTGGAATAAAGACTTGAGTTGGAAA 924
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36216771150
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5