BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G20740.1
Length=847
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488983 jgi|Araly1|488983|fgenesh2_kg.6__2117__AT5G20740.1 1053 0.0
> Ahg488983 jgi|Araly1|488983|fgenesh2_kg.6__2117__AT5G20740.1
Length=773
Score = 1053 bits (570), Expect = 0.0
Identities = 690/747 (92%), Gaps = 11/747 (1%)
Strand=Plus/Plus
Query 8 ACATAACCCTAATTTGGTCTCTTACTCTAACCCGAGAGATAATGGCTCCTAC-ACAAAAT 66
|||||||||||||||||||||| ||||||| |||| ||| |||||||||| | ||| ||
Sbjct 1 ACATAACCCTAATTTGGTCTCTCACTCTAAGCCGATAGAGAATGGCTCCT-CGACACAAG 59
Query 67 CTCTTCCTTGTCGCTATTGCCTTCGCCGTCATTTTCACCGCCTCCACCGTACATGGTCGT 126
|||||||| ||||||||| ||||||| ||||| |||||||| |||||||||| ||||||
Sbjct 60 CTCTTCCTCCTCGCTATTGTCTTCGCCATCATTGTCACCGCCACCACCGTACACGGTCGT 119
Query 127 CATAATGGTGCAGAAGATATCGTGCATTCCTCCTGCGAACACGCGAGCTATCCATCACTA 186
|||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 120 CATAATGGTGCAAAAGATATCGTTCATTCCTCCTGCGAACACGCGAGCTACCCATCACTA 179
Query 187 TGCGTCCGTACTCTTTCGTCATACTCCGGTCCAACCATCACCAACCGCCGCGATCTAGCT 246
||||||||||||||||| || ||||||||||||||||||||||||||||| || ||||||
Sbjct 180 TGCGTCCGTACTCTTTCATCTTACTCCGGTCCAACCATCACCAACCGCCGTGACCTAGCT 239
Query 247 CAAGCCGCCATAAAAATCAGCCTCTCCCACGCTCAAAGCGCCGCGAAGAAACTCGCGGTG 306
|||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 240 CAAGCCGCGGTCAAAATCAGCCTCTCCCACGCTCAAAGCGCCGCGAAGAAACTCACGGTG 299
Query 307 GTGCGAGACTCGGTGGGGAAGAAGAAGCAAGAGAAAGCGGCGCTTGTGGACTGTGTGGAG 366
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 300 GTGCGAGACTCGGTGGGGAAGAAGAGGCAAGAGAAAGCGGCGCTTGTGGACTGTGTGGAG 359
Query 367 ATGATTGGAGACTCTGTGGACGAGCTAAGCCGTACGCTCGGCGTTTTGAAGCACCTCCGT 426
|||||||||||||| |||||||| ||||||| || ||||||||||||||||||||||||
Sbjct 360 ATGATTGGAGACTCGGTGGACGATTTAAGCCGCACCCTCGGCGTTTTGAAGCACCTCCGT 419
Query 427 GTCTCTGGCGGTTCAG-CTAAAGAGTTCCGGTGGCAGATGAGCAATGCACAGACGTGGGC 485
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 ATCTCTGGCGGTTC-GCCTAAAGAGTTCCGGTGGCAGATGAGCAATGCACAGACGTGGGC 478
Query 486 TAGCGCGGCACTTACGGATGACGACACGTGTCTCGATGGGTTTCAAGGGATGGACGACGG 545
||||||||| ||||| ||||||||||||||||||||||||||| ||| ||| ||||||
Sbjct 479 TAGCGCGGCGCTTACCGATGACGACACGTGTCTCGATGGGTTTGAAGAGAT---CGACGG 535
Query 546 TGAAATCAAAACGGAGGTGAAGCAGTGGATGACGAAAGTGGCCAGGGTTACGAGCAACGC 605
||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 536 TGATATCAAAACGGAGGTGAAACAGTGGATGACGAAGGTGGCCAGGGTTACGAGCAACGC 595
Query 606 GCTTTACATGGTCAACCAGCTAGATGAGACACGTGGCAAACCCCACGACGTACATCTTTG 665
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 GCTTTACATGATCAACCAGCTAGATGAGACACGTGGCAAACCCCACGACGTACATCTTTG 655
Query 666 ATGTTAATGCACTAGATCGTTTTAATGGACGGTCTTTATTGTGTGTGTTGGTTTTTCG-T 724
|||||||||||||||||||||| ||||||||||| | |||||||| | ||||||| |
Sbjct 656 ATGTTAATGCACTAGATCGTTT-AATGGACGGTCGTGGTTGTGTGT-T-GGTTTTTTTAT 712
Query 725 TCATGTGTTTTAAGTGTGAGATTATCT 751
|| |||||||||| |||||||||||||
Sbjct 713 TCGTGTGTTTTAATTGTGAGATTATCT 739
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31337037774
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5