BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G20740.1 Length=847 Score E Sequences producing significant alignments: (Bits) Value Ahg488983 jgi|Araly1|488983|fgenesh2_kg.6__2117__AT5G20740.1 1053 0.0 > Ahg488983 jgi|Araly1|488983|fgenesh2_kg.6__2117__AT5G20740.1 Length=773 Score = 1053 bits (570), Expect = 0.0 Identities = 690/747 (92%), Gaps = 11/747 (1%) Strand=Plus/Plus Query 8 ACATAACCCTAATTTGGTCTCTTACTCTAACCCGAGAGATAATGGCTCCTAC-ACAAAAT 66 |||||||||||||||||||||| ||||||| |||| ||| |||||||||| | ||| || Sbjct 1 ACATAACCCTAATTTGGTCTCTCACTCTAAGCCGATAGAGAATGGCTCCT-CGACACAAG 59 Query 67 CTCTTCCTTGTCGCTATTGCCTTCGCCGTCATTTTCACCGCCTCCACCGTACATGGTCGT 126 |||||||| ||||||||| ||||||| ||||| |||||||| |||||||||| |||||| Sbjct 60 CTCTTCCTCCTCGCTATTGTCTTCGCCATCATTGTCACCGCCACCACCGTACACGGTCGT 119 Query 127 CATAATGGTGCAGAAGATATCGTGCATTCCTCCTGCGAACACGCGAGCTATCCATCACTA 186 |||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||| Sbjct 120 CATAATGGTGCAAAAGATATCGTTCATTCCTCCTGCGAACACGCGAGCTACCCATCACTA 179 Query 187 TGCGTCCGTACTCTTTCGTCATACTCCGGTCCAACCATCACCAACCGCCGCGATCTAGCT 246 ||||||||||||||||| || ||||||||||||||||||||||||||||| || |||||| Sbjct 180 TGCGTCCGTACTCTTTCATCTTACTCCGGTCCAACCATCACCAACCGCCGTGACCTAGCT 239 Query 247 CAAGCCGCCATAAAAATCAGCCTCTCCCACGCTCAAAGCGCCGCGAAGAAACTCGCGGTG 306 |||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 240 CAAGCCGCGGTCAAAATCAGCCTCTCCCACGCTCAAAGCGCCGCGAAGAAACTCACGGTG 299 Query 307 GTGCGAGACTCGGTGGGGAAGAAGAAGCAAGAGAAAGCGGCGCTTGTGGACTGTGTGGAG 366 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 300 GTGCGAGACTCGGTGGGGAAGAAGAGGCAAGAGAAAGCGGCGCTTGTGGACTGTGTGGAG 359 Query 367 ATGATTGGAGACTCTGTGGACGAGCTAAGCCGTACGCTCGGCGTTTTGAAGCACCTCCGT 426 |||||||||||||| |||||||| ||||||| || |||||||||||||||||||||||| Sbjct 360 ATGATTGGAGACTCGGTGGACGATTTAAGCCGCACCCTCGGCGTTTTGAAGCACCTCCGT 419 Query 427 GTCTCTGGCGGTTCAG-CTAAAGAGTTCCGGTGGCAGATGAGCAATGCACAGACGTGGGC 485 ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 ATCTCTGGCGGTTC-GCCTAAAGAGTTCCGGTGGCAGATGAGCAATGCACAGACGTGGGC 478 Query 486 TAGCGCGGCACTTACGGATGACGACACGTGTCTCGATGGGTTTCAAGGGATGGACGACGG 545 ||||||||| ||||| ||||||||||||||||||||||||||| ||| ||| |||||| Sbjct 479 TAGCGCGGCGCTTACCGATGACGACACGTGTCTCGATGGGTTTGAAGAGAT---CGACGG 535 Query 546 TGAAATCAAAACGGAGGTGAAGCAGTGGATGACGAAAGTGGCCAGGGTTACGAGCAACGC 605 ||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 536 TGATATCAAAACGGAGGTGAAACAGTGGATGACGAAGGTGGCCAGGGTTACGAGCAACGC 595 Query 606 GCTTTACATGGTCAACCAGCTAGATGAGACACGTGGCAAACCCCACGACGTACATCTTTG 665 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 596 GCTTTACATGATCAACCAGCTAGATGAGACACGTGGCAAACCCCACGACGTACATCTTTG 655 Query 666 ATGTTAATGCACTAGATCGTTTTAATGGACGGTCTTTATTGTGTGTGTTGGTTTTTCG-T 724 |||||||||||||||||||||| ||||||||||| | |||||||| | ||||||| | Sbjct 656 ATGTTAATGCACTAGATCGTTT-AATGGACGGTCGTGGTTGTGTGT-T-GGTTTTTTTAT 712 Query 725 TCATGTGTTTTAAGTGTGAGATTATCT 751 || |||||||||| ||||||||||||| Sbjct 713 TCGTGTGTTTTAATTGTGAGATTATCT 739 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31337037774 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5