BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G20790.1
Length=744
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488984 jgi|Araly1|488984|fgenesh2_kg.6__2118__AT5G20790.1 761 0.0
Ahg936924 jgi|Araly1|936924|scaffold_501115.1 135 3e-31
> Ahg488984 jgi|Araly1|488984|fgenesh2_kg.6__2118__AT5G20790.1
Length=684
Score = 761 bits (412), Expect = 0.0
Identities = 632/728 (87%), Gaps = 55/728 (8%)
Strand=Plus/Plus
Query 8 ACACTTCAATAAAGAGATCGATGTCGACTTTGGAATCTCCATTAGAGGCGTTGGCGTTTG 67
||| ||||| |||||||||||||||||| |||||||||||||| ||||||||||| ||||
Sbjct 1 ACATTTCAAGAAAGAGATCGATGTCGACATTGGAATCTCCATTGGAGGCGTTGGCTTTTG 60
Query 68 AATACGCTAGCTTAGGTGTTTTCGCCGTCGTCAACAACGTCTGGACATGGATCGCCGTCG 127
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AATACGCTAGCTTCGGTGTTTTCGCCGTCGTCAACAACGTCTGGACATGGATCGCCGTCG 120
Query 128 TGACTGCCGCTGTCAGCTTCTGGAGGATCAGAGTCACAACCAT-AGGAGTCGGAGACGGC 186
|||| ||||| |||||||||||||||||||||||||| ||||| || ||| |||||||||
Sbjct 121 TGACCGCCGCCGTCAGCTTCTGGAGGATCAGAGTCACCACCATCAG-AGTTGGAGACGGC 179
Query 187 CATGCATGTGTCTTGATAGAAGAATTAACCGGTTCTAAATCTGAAAACGAATCCGGTCGT 246
||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 180 CATGCATGTGTCTTGGTAGAGGAATTAACCGGTTCTAAATCGGAAAACGAATCCGGTCGT 239
Query 247 CTCGAACCGAAATCAATAACCGGTCCGGTCAAAGAAACGGTTGCACGAGTGAAGGAAACG 306
||||||||||||||||||||||||||||| |||||||||| | | | ||
Sbjct 240 CTCGAACCGAAATCAATAACCGGTCCGGTTAAAGAAACGG----A--A---A------CG 284
Query 307 GTTACGAAAACGGAGCCGTTAATATGCGATGACGGAGTGAC-AAAGGGGAAGCTGACGAT 365
||||| ||||||||||||||||| | |||||||||||||| |||||| |||||||||||
Sbjct 285 GTTACAAAAACGGAGCCGTTAATGTATGATGACGGAGTGACCAAAGGG-AAGCTGACGAT 343
Query 366 GTGCTACGAGGTAGACGTTGACGTTGACGGTGGGAGGTGTGTT-A--------ACGGAGA 416
|| ||| ||||||||||||||||||||||||||||||||| || | |||||||
Sbjct 344 GTACTATGAGGTAGACGTTGACGTTGACGGTGGGAGGTGTATTGAGTCTGTTGACGGAGA 403
Query 417 TTTAACGGCAGTTAGCTACGGAGGAGGTTTGGGTAATTGTGGCGGGGATTGGTGGGAGAA 476
|||||||| ||||||| ||||||||||||||||||||||||||| || |||||||||||
Sbjct 404 GTTAACGGCCGTTAGCTGCGGAGGAGGTTTGGGTAATTGTGGCGGTGAGTGGTGGGAGAA 463
Query 477 ATGGGATGGAGTGGTGAGGATGAGAAATGGTGATGACAGTTGGTACCGTTACGTGGATTT 536
|||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 464 ATGGGAAAGAGTGGTGAGGATGAGAAATGGTGATGACGGTTGGTATCGTTACGTGGATTT 523
Query 537 AACGGTGATTAATGGAAATGTGGTAAGGTTATGGGATGACAACAAAACACTAGTAACGGC 596
|||||||||||| |||||||| || |||||||||||||||| | | | |||||||||||
Sbjct 524 AACGGTGATTAACGGAAATGTTGTGAGGTTATGGGATGACACCCAGAG-CTAGTAACGGC 582
Query 597 GGCATGTGTCTAAATTAGAGAAGTTTCATATTTCGGAAAGTTTTTAAATCTTGAGAAGCT 656
|||| ||||||||||||||| ||| | | || | |||||||| ||
Sbjct 583 GGCAGGTGTCTAAATTAGAG---TTT--T-T-----AA--T--------CTTGAGAAACT 621
Query 657 TTCTTGGTTTGAAGTGttttttttttGTTGGTTGATTAAGTTGTAATTTGTAAATAATTT 716
|||||||||| |||||| |||||| | | |||||||||||||||||||||||||||||
Sbjct 622 TTCTTGGTTTAAAGTGTATTTTTT--G--G-TTGATTAAGTTGTAATTTGTAAATAATTT 676
Query 717 TCACACAA 724
||||||||
Sbjct 677 TCACACAA 684
> Ahg936924 jgi|Araly1|936924|scaffold_501115.1
Length=610
Score = 135 bits (73), Expect = 3e-31
Identities = 99/111 (89%), Gaps = 4/111 (4%)
Strand=Plus/Plus
Query 466 TGGTGGGAGAAATGGGATG-GAGTGGTGAGGATGAGAAATGGTGATGACA-GTTGGTACC 523
|||||||||| |||||| | |||||||| |||||||||||| ||||| | |||||||||
Sbjct 423 TGGTGGGAGAGATGGGA-GACAGTGGTGAAGATGAGAAATGGAGATGA-AGGTTGGTACC 480
Query 524 GTTACGTGGATTTAACGGTGATTAATGGAAATGTGGTAAGGTTATGGGATG 574
||||||||||||||||||||||||| |||||||| || ||||| |||||||
Sbjct 481 GTTACGTGGATTTAACGGTGATTAACGGAAATGTTGTGAGGTTGTGGGATG 531
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27410377323
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5