BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G20810.2
Length=1271
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488986 jgi|Araly1|488986|fgenesh2_kg.6__2120__AT5G20810.1 926 0.0
> Ahg488986 jgi|Araly1|488986|fgenesh2_kg.6__2120__AT5G20810.1
Length=938
Score = 926 bits (501), Expect = 0.0
Identities = 611/664 (92%), Gaps = 8/664 (1%)
Strand=Plus/Plus
Query 156 TCCGAGAACAGAATTATCCTTaaaaaaaaGATCGAAGCGAATCATAA-CAAACAAATTTT 214
||||||||||||| | || |||||||||||||||||||||||| || |||| |||| ||
Sbjct 95 TCCGAGAACAGAAAAAACC-TAAAAAAAAGATCGAAGCGAATCAAAATCAAAGAAATCTT 153
Query 215 CGGGGGCT-AtttttttttGCATGGTGTTATTCATCGTGTCCATAGCTAAAGCAAGCTTC 273
|||| ||| ||||||||| | | || || || || ||| | || |||||||
Sbjct 154 CGGGAGCTCCTTTTTTTTT-TTTTTTTTTTTTTTTCATG-ATATA-CCGTAGAAAGCTTC 210
Query 274 AA-TTCGTTTTCCTCTTCAGCTACAAAGGGAAGAAGAAGATCATATGTGACATTTGATCT 332
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 211 AATTTCGTTTTCCTCTTCAGTTACAAAGGGAAGAAGAAGATCATATGTGACATTTGATCT 270
Query 333 TTCG-TTATACTAGCCAGATGGATGAAAACAACGCGGCCAAGTTAACCGGTATCAGGCAG 391
|||| || || ||| ||||||||||||||||| ||||| ||||||||||| |||||||||
Sbjct 271 TTCGTTTTTATTAGGCAGATGGATGAAAACAATGCGGCAAAGTTAACCGGCATCAGGCAG 330
Query 392 ATTGTCAGGCTTAAGGAGATTTTGCAGAAATGGCAAACCGTCACCATAGGCCCCAAGTCA 451
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 331 ATTGTGAGGCTTAAGGAGATTTTGCAGAAATGGCAAACCGTCACCATAGGGCCCAAGTCA 390
Query 452 GAAGTTCCTCCATTGGCAGCTGGAAAGCAAGCAGTGGCGATGATTTCGCCCGCCATCAAC 511
|| ||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||
Sbjct 391 GATGTTCCTCCATTGGCAGCTGGAAAGCAAGCGGTGGCCATGATTTCGCCCGCGATCAAC 450
Query 512 AAGAGGCTATTAGATGTCAAGAACGGTGACTCGGATGAGGAAACCTGTCAAAGTCCTGAG 571
|||||||||||||||||||||||||||||||| |||||||||| ||| ||||| ||||||
Sbjct 451 AAGAGGCTATTAGATGTCAAGAACGGTGACTCCGATGAGGAAAACTGCCAAAGCCCTGAG 510
Query 572 CCGCCTCATGATGTTCCTAAAGGGAATCTTGCTGTTTATGTTGGACCGGAGCTAAGGAGG 631
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 511 CCGCCTCATGATGTTCCTAAAGGGTATCTTGCGGTTTATGTTGGACCGGAGCTAAGGAGG 570
Query 632 TTTATCATACCGACAAGCTATCTTAGCCACTCTCTGTTCAAGGTTTTGCTCGAGAAAGCA 691
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 571 TTTATCATACCGACAAGCTATCTTAGCCACTCTCTGTTCAAGGTTTTGCTTGAGAAAGCA 630
Query 692 GAGGAAGAGTTTGGGTTTGATCAGAGCGGTGCGCTCACCATCCCTTGCGAGGTCGAGACT 751
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 631 GAGGAAGAGTTTGGGTTTGATCAGAGCGGCGCCCTCACCATCCCTTGCGAGGTCGAGACT 690
Query 752 TTCAAGTACTTGCTTAAGTGCATGGAGAACAATCTTAAAGATCTTCATCCTGATGACAAC 811
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 691 TTCAAGTACTTGCTTAAGTGCATGGAGAACAATCTTAAAGATCTTCATCCTGATGACAAC 750
Query 812 TCTG 815
||||
Sbjct 751 TCTG 754
Score = 274 bits (148), Expect = 1e-72
Identities = 175/187 (94%), Gaps = 5/187 (3%)
Strand=Plus/Plus
Query 1082 GATGGGGAGGCAGTAGCAGCAAAGGAAGAGTAAATACAAGTCAAGTGATAAAAAATCTTA 1141
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 754 GATGGGGATGCAGTAGCAGCAAAGGAAGAGTAAATACAAGTCAAGTGATAAAAACTCTTA 813
Query 1142 AAACATTTATTTTGTT---TTGATTCTCTTGTTATCCTTTAATCATATACTGATGGAAAT 1198
|||||||| ||||||| ||| | ||||||||||||||||||||||||||||||||||
Sbjct 814 AAACATTTCTTTTGTTACAATGA-T-TCTTGTTATCCTTTAATCATATACTGATGGAAAT 871
Query 1199 TGTTAATTAGGGATGATTACTTTGGGGTGTAATTGTAAAATCAGATTATCTTTGTGTTTT 1258
||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 872 TGTCAATTAGGGATGTTTACCTTGGGGTGTAATTGTAAAATCAGATTATCTTTGTGTTTT 931
Query 1259 CCTGGTT 1265
|||||||
Sbjct 932 CCTGGTT 938
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47501154582
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5