BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G20820.1
Length=646
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488987 jgi|Araly1|488987|fgenesh2_kg.6__2121__AT5G20820.1 785 0.0
> Ahg488987 jgi|Araly1|488987|fgenesh2_kg.6__2121__AT5G20820.1
Length=560
Score = 785 bits (425), Expect = 0.0
Identities = 527/574 (92%), Gaps = 15/574 (3%)
Strand=Plus/Plus
Query 30 ctctctctctctcACCGGAAAACTCACTCGGACTTACATTTCCGACGTCAAACTT-CTCC 88
|||||||||||||||||||||||| |||||||||| ||| |||||||||||| || || |
Sbjct 1 CTCTCTCTCTCTCACCGGAAAACTTACTCGGACTTGCATCTCCGACGTCAAAATTCCT-C 59
Query 89 AAACCGAATCGGTAATGGCGAAAGGAGGAAACAAACTGATGAAGCTGAAATCAGTTTTGA 148
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 AAACGGAATCGGAAATGGCGAAAGGAGGAAACAAACTGATGAAGCTGAAATCAGTTTTGA 119
Query 149 AGAAACTCAATTCATTCAACACCAAGCCTAACCAGCCACCAGCTCAAACCAATCACAGCC 208
|||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||
Sbjct 120 AGAAACTCAATTCATTCAACACCAAGCCTAACCAACCACAAGCTCAAACCAATCACGGCC 179
Query 209 GATCCTCCGCCGTGAGTGCGTTCCCCTCTGAAGACCTTCAAACTGTCTACGTAGGCCGAA 268
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 180 GATCCTCCGCCGTGAGTGCATTTCCCTCTGAAGACCTTCAAACTGTCTACGTAGGCCGAA 239
Query 269 CACGGAGGACATACCACGTGAGCTCCGATGTCGTGAGCCACCCGCTCTTCCAGCAGCTAG 328
|||||||| | |||||||||||||| || || ||||||||||||||||||||||||||||
Sbjct 240 CACGGAGGCCGTACCACGTGAGCTCTGACGTTGTGAGCCACCCGCTCTTCCAGCAGCTAG 299
Query 329 CGGCGGTGGATGGTGGATGCGGCAGCGAGGACGGTTCCATCTCTGTGTCGTGCGAAGTTG 388
||||||||||||||||||| ||||||||||||||||||||||| ||||| || |||||||
Sbjct 300 CGGCGGTGGATGGTGGATGTGGCAGCGAGGACGGTTCCATCTCCGTGTCATGTGAAGTTG 359
Query 389 TCTTGTTTGAGCATTTGCTTTGGATGTTGGAGAACGCCGACGCCGATGAGTCACGCCCCG 448
|||||||||||||||||||||||||| |||||||||| ||||| || ||||||||||| |
Sbjct 360 TCTTGTTTGAGCATTTGCTTTGGATGCTGGAGAACGCGGACGCTGACGAGTCACGCCCTG 419
Query 449 AGTCGGTCTACGAACTTGTCGAGTTCTACGCTTGTTAACTCTTTATGATTAATTTAGGTT 508
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AGTCGGTCCACGAACTTGTCGAGTTCTACGCTTGTTAACTCTTTATGATTAATTTAGGTT 479
Query 509 CAAAATATATTTATGATTAAATGTTACATGTTTGTATATTCTACACTTTGTATACTTTAC 568
|||||||||| | || | | | | |||||||||||||||| ||||| | || | ||
Sbjct 480 CAAAATATATACA--ATGA--T-T-A-ATGTTTGTATATTCTATACTTT-TGTA-T--AC 528
Query 569 ACTTTACATAGTATTTCGTGAAATAATCTATTTT 602
|||||||||| |||||||||||||||||||||
Sbjct 529 --TTTACATAGTCTTTCGTGAAATAATCTATTTT 560
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23674331457
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5