BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G20840.1
Length=3678
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488990 jgi|Araly1|488990|fgenesh2_kg.6__2124__AT5G20840.1 4735 0.0
Ahg484790 jgi|Araly1|484790|fgenesh2_kg.5__782__AT3G43220.1 1971 0.0
> Ahg488990 jgi|Araly1|488990|fgenesh2_kg.6__2124__AT5G20840.1
Length=3386
Score = 4735 bits (2564), Expect = 0.0
Identities = 2902/3060 (95%), Gaps = 44/3060 (1%)
Strand=Plus/Plus
Query 541 TTTCGATTTT-GAATATTGGTGAATGCTCCGGCGAGAT-TATTCTCTCAGCCCATCGGCT 598
||| |||||| |||| |||||||||||||||||||||| |||||||||||||| || ||
Sbjct 350 TTTTGATTTTGGAAT-TTGGTGAATGCTCCGGCGAGATAAATTCTCTCAGCCCAGCGTCT 408
Query 599 TGGGCTTAGATCTGTAAATCAAAAGGAACCAATAAT-TGAGAAATCAGCTATGACCTCAT 657
|||||||||||||||||||| ||| | | || | | | |||||||||||||||||||
Sbjct 409 TGGGCTTAGATCTGTAAATC-AAA-G-TTC-AT--TGTCA-AAATCAGCTATGACCTCAT 461
Query 658 CGCCATCAGTGGAGAATGGCGGCTCAGGCTCCTCTGGATCATCTGCTCTTTTAGGCTGTA 717
|||||||| |||||||||| ||||| ||||||||||| || ||||||||| |||||||||
Sbjct 462 CGCCATCAATGGAGAATGGAGGCTCTGGCTCCTCTGGCTCCTCTGCTCTTCTAGGCTGTA 521
Query 718 TGCAACAATTCAAGCTCTTCGAGACTCAAGCGAATTTCTATATGATTGGTTGGAACGGTA 777
||||| ||||||| ||||||||||||||| |||||||||| |||||||||||||| | ||
Sbjct 522 TGCAAGAATTCAAACTCTTCGAGACTCAATCGAATTTCTACATGATTGGTTGGAATGCTA 581
Query 778 GTGGAGTATATAGAATACTTAAGATAGACCGGCTCGAAGCATCTGAGCTTAATCTCAGAG 837
||||||| ||||||||||| ||||||||||| ||||| || |||||||||||||||||||
Sbjct 582 GTGGAGTCTATAGAATACTAAAGATAGACCGCCTCGATGCGTCTGAGCTTAATCTCAGAG 641
Query 838 AGGATTCGACTGCGTATACCAAAAAAGAATGCTACGAGTTGCTTAAACGGATACACGAAG 897
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 642 AGGATTCGACTGCTTATACCAAAAAAGAATGCTACGAGTTGCTTAAACGGATACACGAAG 701
Query 898 GAAACAAGGCGACTGGTGGACTGAAACTTGTCACTGTTTGTTATGGAATCATTGGGTTCA 957
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 702 GAAACAAGGTGACTGGTGGACTCAAACTTGTCACTGTTTGTTATGGAATCATTGGGTTCA 761
Query 958 TTAAGTTTTTGGGACCATATTACATGCTGCTTATAACTGAAAGAAGAGAGATAGGTGAAA 1017
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 762 TTAAGTTTTTGGGACCATACTACATGCTGCTTATAACTGAAAGAAGAGAGATCGGTGAAA 821
Query 1018 TTTGTGGTCACATTGTTTACGAAGTGTCAAAGAGTGATATGATTGCATTGCAACATTCTA 1077
|||||||||||| |||||| |||||||||||||||||||| |||||||||||| ||||||
Sbjct 822 TTTGTGGTCACAGTGTTTATGAAGTGTCAAAGAGTGATATAATTGCATTGCAAAATTCTA 881
Query 1078 GCGTGCTTTGCAACACTGCAAATTTAAGAGACGAGAACAGGTACAAGAGACTCCTGTGTA 1137
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 882 GCGTGCTTTGCAACACTGCAAATTCAAGAGACGAAAACAGGTACAAGAGACTCCTGTGTA 941
Query 1138 TGGTGGACCTTACGAAAGACTTCTTTTTCAGCTATTCTTACAATATAATGCGAAGTTTCC 1197
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 942 TGGTGGACCTTACAAAAGACTTCTTTTTCAGCTATTCGTACAATATAATGCGAAGTTTCC 1001
Query 1198 AGAAGAATATATGCGACCATGAGAGTGGAGGTACTCTCTATAAGAAAATGTTTGTGTGGA 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1002 AGAAGAATATATGCGACCATGAGAGTGGAGGTACTCTCTATAAGAAAATGTTTGTGTGGA 1061
Query 1258 ACGAATTCTTGACTCGGGGAACTCGACATCACCTTCGGAATACCCTGTGGACTGTAGCAT 1317
| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1062 ATGAATTCCTGACTCGGGGAACTCGACATCACCTTCGGAATACCCTGTGGACTGTAGCAT 1121
Query 1318 TGGTGTATGGGTTTTTTAAGCAGACAATACTTTCCGAAGCTGGACGGAATTTCAAACTCA 1377
|||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 1122 TGGTGTATGGTTTTTTTAAGCAGACAACACTTTCTGAAGCTGGACGGAATTTCAAACTCA 1181
Query 1378 CTCTTATTGCTAGGCGTTCCCGCCATAATGCTGGAACCAGGTACTTGAAACGAGGAATAA 1437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1182 CTCTTATTGCTAGGCGTTCCCGCCATAATGCTGGAACCAGGTACTTGAAACGAGGAATAA 1241
Query 1438 ACGAAAGTGGCAATGTTGCTAATGATGTGGAAACAGAACAGATAGTGTCTGAGGATGTTC 1497
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1242 ACGAAAGTGGCAATGTTGCTAATGATGTGGAAACAGAGCAGATAGTGTCTGAGGACGTTC 1301
Query 1498 CAGTAGACCGTCCCATGCAAATAAGTTCTGTTGTGCAGAATCGTGGCTCAATCCCTCTAT 1557
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1302 CTGTAGACCGTCCCATGCAAATAAGTTCTGTTGTGCAGAATCGTGGCTCAATCCCTCTAT 1361
Query 1558 TCTGGTCACAGGAGACCTCACGGATGAAAGTTAAGCCTGATATAGTATTGTCAAAAAGGG 1617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1362 TCTGGTCACAGGAGACCTCACGGATGAAAGTTAAGCCTGATATAGTATTGTCAAAAAGGG 1421
Query 1618 ACCTGAACTATGAGGCAACTAGAGTTCACTTTGAAAATCTTGTGGAGCGTTATGGAGTCC 1677
||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||| |||
Sbjct 1422 ACCTGAACTATGAGGCAACTAGACTTCACTTTGAAAACCTTGTGGAGCGATATGGAATCC 1481
Query 1678 CCATCATTATTCTGAACTTGATCAAGACCAACGAGAGGAAACCCAGGGAGTCGATTCTCC 1737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1482 CCATCATTATTCTGAACTTGATCAAGACCAACGAGAGGAAACCCAGGGAGTCGATTCTCC 1541
Query 1738 GGGCAGAGTTTGCTAATGCAATTGACTTTATAAACAAAGATCTGCCGGAAGAAAATCGGC 1797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1542 GGGCAGAGTTTGCTAATGCAATTGACTTTATAAACAAAGATCTGCCGGAAGAAAATCGGC 1601
Query 1798 TTAGATTCCTCCACTGGGACTTGCACAAACATTTTCACAGCAAAACAGAAAATGTATTGG 1857
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1602 TTAGATTCCTCCATTGGGACTTGCACAAACATTTTCACAGCAAAACAGAAAACGTATTGG 1661
Query 1858 CACTTCTTGGAAAAGTAGCTGCCTGTGCTTTGATGCTAACAGGTTTCTTTTATTATCAAC 1917
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1662 CACTTCTTGGAAAAGTAGCTGCTTGTGCTTTGATGCTAACAGGGTTCTTTTATTATCAAC 1721
Query 1918 TTACACCAGCAATGAAGCTTGAGGGTTATATGAGCTTGTCTTCGTCTGATGCCGACACGT 1977
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||
Sbjct 1722 TTACACCAGCAATGAAGCTTGAGGGTTATATGAGCTTGTCTTCATCTGATGCCGATATGT 1781
Query 1978 CTCCACATAATAGTTCTGATGATGATAGTAGGGATTATGACTCATTAGAGAAGAATTGCC 2037
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
Sbjct 1782 CTCCACATAATAGTTCTGATGATGATAGTAGGGATTGTGACTCATTAGAGAAGAGTTTTC 1841
Query 2038 GCCCAAGTAAGAATGTTGCAAATGGTGATTATGATGTCAAGCCTAGCAGGCTCCAGAGTG 2097
||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||| |
Sbjct 1842 GCCCAAGTAAGAATGTTACAAATGGCGATTATGATACCAAGCCTAGCAGGCTCCAGAGGG 1901
Query 2098 GAGTGCTGCGGACCAACTGCATAGATTGCCTTGATCGTACAAATGTTGCCCAATATGCAT 2157
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1902 GAGTGCTGAGGACTAACTGCATAGATTGCCTTGATCGTACAAATGTTGCCCAATATGCAT 1961
Query 2158 ATGGTTGGGCTGCTCTAGGGCAACAGCTTCATGCTTTAGGAATTAGAGATGCTCCAACAA 2217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1962 ATGGTTGGGCTGCTCTAGGGCAACAGCTTCATGCTTTAGGAATTAGAGATGCTCCAACAA 2021
Query 2218 TAGAACTTGATGATCCTTTGTCTAGTACTTTAATGGGGTTATACGAGAGAATGGGAGACA 2277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2022 TAGAACTTGATGATCCTTTGTCTAGTACTTTAATGGGGTTATACGAGAGAATGGGAGACA 2081
Query 2278 CACTAGCTTATCAATATGGTGGATCTGCAGCCCACAATAAGGTTTTTAGTGAAAGGCGAG 2337
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2082 CTCTAGCTTATCAATATGGTGGATCTGCAGCCCACAATAAGGTTTTTAGTGAAAGGCGAG 2141
Query 2338 GCCAGTGGAGAGCAGCAACCCAGTCACAAGAGTTCTTGAGGACTCTGCAACGTTATTATA 2397
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2142 GACAGTGGAGAGCAGCAACCCAGTCACAAGAGTTCTTGAGGACTCTGCAACGTTACTATA 2201
Query 2398 ATAACGCATATATGGATGCGGATAAACAAGATGCCATTAATATATTTCTTGGTACTTTCC 2457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2202 ATAACGCATATATGGATGCGGATAAACAAGATGCCATTAATATATTTCTTGGTACTTTCC 2261
Query 2458 GGCCTGAACAAGGGAGCCAGGCGGTTTGGGAGTTGCGTTCAGATTCCCACTCTAATGGAC 2517
| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2262 GTCCTGAACAAGGGAGTCAGGCGGTTTGGGAGTTGCGTTCAGATTCCCACTCCAATGGAC 2321
Query 2518 GAAGTGGAGAGATAAGCATGGGGGAAGATGAAAAGTTTCTTGTAAAGAGGTGCTTATCAG 2577
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 2322 GAAGTGGAGAGATAAGCATGGGGGAAGATGAAAGGTTTCTTGTGAAGAGGTGCTTATCAG 2381
Query 2578 ATGGGAATATTCTCCATGAAAGTCACACTCCGATGTCTGCAATGAGTAGAAAGAATGAAA 2637
||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||
Sbjct 2382 ATGGGAATATTCTCCATGAAAGTCACACTCCGATGTCCGCAATGAGTAGGAAGAGTGAAA 2441
Query 2638 GCATATCACATAGAGGTTTTGTGTCGTCACACCAAGTGACTCGTACTCATATAATTTCAG 2697
|||||||||||| ||||||||||||||||||||||||||||| | | ||| | ||||||
Sbjct 2442 GCATATCACATAAAGGTTTTGTGTCGTCACACCAAGTGACTC--A-T-ATA-A-TTTCAG 2495
Query 2698 AATCATCACCAGATATGCCAGCTGCCGGTGATGTAACATTATCGAGGTGTACTCCGTCAA 2757
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2496 AGTCATCACCAGATATGCCAGCTGCCGGTGATGTAACATTATCGAGGTGTACTCCGTCAA 2555
Query 2758 TGCCTAGCACACAtttttttGGAGATGTCCAAAAAGTTCAACATAATGGTAGTAGCTCCA 2817
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 2556 TGCCTAGCACACATTTTTTTGGAGATGCCCAAAAAATTCAACATAATGGTAGTAGCTCCA 2615
Query 2818 TTTACTTGTCCGAGCAAGAAGATATGTCTAGTGTCTCAAATTTCGTTGATATTGAGTGGC 2877
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2616 TTTACTTGTCCGAGCAAGAAGATATGTCTAGTGTCTCAAATTTTGTTGATATTGAGTGGC 2675
Query 2878 TTTCGTCGTCAGAAAATCTATGTGAGAACGATCACTTGTCCAGGCCGTCAGCGCTTACAA 2937
|||||||||| ||||||||||||||||||||||| ||||||||||||| |||| ||||||
Sbjct 2676 TTTCGTCGTCGGAAAATCTATGTGAGAACGATCAATTGTCCAGGCCGTTAGCGGTTACAA 2735
Query 2938 TATATTCAACCGCAGAGACGTCTTCATCAGAGAATATCATCACTGAAGTAAAACAATT-G 2996
|||| |||||||| ||||||||||||||||||||||| |||||||||| |||||| || |
Sbjct 2736 TATACTCAACCGCGGAGACGTCTTCATCAGAGAATATTATCACTGAAGCAAAACA-TTCG 2794
Query 2997 ACGCCAGCTATGAGA-GAGAGTGGATCAAGCAGCAGGAAGGGAAAAGAACCAGTGGAAAC 3055
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2795 ACGCCAGCTATGA-ACGAGAGTGGATCAAGCAGCAGGAAGGGAAAAGAACCAGTGGAAAC 2853
Query 3056 CGAACTGTCTGTACACACAAAGATTCGCGATGATTTCCCAGATAGCTTCAAACAATGGGT 3115
||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||
Sbjct 2854 CGAACTGTCTGTACACACAAATATTCGGGATGATTTTCCAGATAGCTTCAAACAATGGGT 2913
Query 3116 AGCATACGGGGAAGCACTCTGCCATTGAAGATCTCTCAACTTTCCATTTCCAACAAAGAA 3175
|||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||
Sbjct 2914 AGCATACGGGGAAGCACTCTGCCATTGAAGCTCTCTCAACCTTCCATTTCCAACAA-GAA 2972
Query 3176 CATACTTTGCTTTCACCAAACTTAAAAGTCTTCT-GAACATTTGGGTATAACGGTGCAAA 3234
| |||||||| |||||| |||||| ||||||| || ||||||||||||||||||||||
Sbjct 2973 CGTACTTTGCCTTCACCTTACTTAAG-GTCTTCTTGA-CATTTGGGTATAACGGTGCAAA 3030
Query 3235 CATGGAGAAGCGACTGGT-G----GAAAGATCCTCAGTACCATGTATATGAGGCTTCACG 3289
|||||||||||||||||| | ||||||| | ||||||||||||| ||||||||||||
Sbjct 3031 CATGGAGAAGCGACTGGTAGAAAAGAAAGATTCGCAGTACCATGTATCTGAGGCTTCACG 3090
Query 3290 GTGACGACCGAACGGTCAAAAGAGAT-AGAACTATTAAGAGGAGCAAATACTAAATAAGC 3348
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 3091 GTGACGGCCGAACGGTCAAAAGAGATTAGAACTATTAAGAGGAGCAAATACTAAATAAGC 3150
Query 3349 TGAGAAGTTTGAGTTTGCAGTCTTGCAGAGAAAACGAAAATTTCATCTTTATGGAGAGAA 3408
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 3151 TGAGAAGTTTGAGTTTGCAGTCTTGCAGAGAAAAGGAAAATTTCATCTTTATGGAGA-AA 3209
Query 3409 G-AAATTAAACTTGTGATAATCTGAGACTTTTGTTAGGGTCtttttttGGGGGGTTTGAA 3467
| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 3210 GGAAATTAAACTTGTGATAATCTGAGACTTTTGTTAGGGTCTTTTTTTTGGG--TTTGAA 3267
Query 3468 GTCT--GTTGTAAATAT--CTGTATCATTTGTTAATCCATCTCGTAAGGTCTTTACTATT 3523
|||| ||||||||||| |||||| ||| |||||||||||| |||||||||||||| ||
Sbjct 3268 GTCTATGTTGTAAATATATCTGTATGATT-GTTAATCCATCTTGTAAGGTCTTTACTGTT 3326
Query 3524 CGTaaaaaaaaa---aTC-CATTCGTCTAACCTGTAGTCGCTTCAAAACACAACTGCATT 3579
|| ||||||||| || ||||||| |||||||||||||||||||||| ||||||||||
Sbjct 3327 CGGAAAAAAAAATCCATAACATTCGTATAACCTGTAGTCGCTTCAAAACGCAACTGCATT 3386
> Ahg484790 jgi|Araly1|484790|fgenesh2_kg.5__782__AT3G43220.1
Length=2981
Score = 1971 bits (1067), Expect = 0.0
Identities = 2084/2561 (81%), Gaps = 126/2561 (5%)
Strand=Plus/Plus
Query 639 AAA-TCAGCTATGACCTCATCGCCATCAGTGGA-GAATGGCGGCTCAGGCTCCTCTGGAT 696
||| ||||||||| | |||||||||| | ||| | |||| || | | |||||||||||
Sbjct 310 AAATTCAGCTATGTCTTCATCGCCATTAACGGACG-ATGGTGGTTTAAGCTCCTCTGGAA 368
Query 697 C-A-TC-TGCTCTTTTA-G--GC-TGTATGCAACAATTCAAGCTCTTCGAGACTCAAGCG 749
| | | | ||| |||| | | | |||||| ||||||| || ||||| |||||| ||
Sbjct 369 CAACACATTCTC-TTTACGCTTCTTCTATGCAGGAATTCAAACTGTTCGAAACTCAATCG 427
Query 750 AA-TTTCTATATGATTGGTT-GGAACGGTAGTGGAGTATATAGAATACTTAAGATAGACC 807
|| ||| || |||||||||| ||| | | |||||||| |||||| |||| ||||| || |
Sbjct 428 AACTTT-TACATGATTGGTTGGGATC-GAAGTGGAGTTTATAGAGTACTAAAGATTGATC 485
Query 808 GGCTCGAAGCATCTGAGCTTAATC-TCAGAGAGGATTCGACTGCGTATAC-CAAA-AAAG 864
| || || | ||||||||||| | | || | ||||||||| | | ||| |||| ||||
Sbjct 486 GTCTTGATCCGTCTGAGCTTAA-CATTAGTCAAGATTCGACT-CAT-TACACAAAGAAAG 542
Query 865 AATGCTACGAGTTGCTTAAACGGATACACGAAGGAAACAAGGCGACTGGTGGACTGAAAC 924
||||||| |||||||| ||||||||||| |||||||| ||||| || ||||| |||||||
Sbjct 543 AATGCTATGAGTTGCTCAAACGGATACATGAAGGAAATAAGGCTACGGGTGGGCTGAAAC 602
Query 925 TTGTCACTGTTTGTTATGGAATCATTGGGTTCATTAAGTTTTTGGGACCATATTACATGC 984
|||||||| |||||||||| |||||||| || |||| || |||||||| ||||||||||
Sbjct 603 TTGTCACTCTTTGTTATGGTATCATTGGCTTTGTTAAATTCTTGGGACCCTATTACATGC 662
Query 985 TGCTTATAACTGAAAGAAGAGAGATAGGTGAAATTTGTGGTCACATTGTTTACGAAGTGT 1044
|||||||||||||||||||| | ||||||||||||| |||||| | ||| || | || |
Sbjct 663 TGCTTATAACTGAAAGAAGACAAATAGGTGAAATTTTTGGTCATAGTGTCTATGCTGTAT 722
Query 1045 CAAAGAGTGATATGA-TTGCATTGCA-ACATTCTAGC-GTGCTTTGCAACACTGCAAATT 1101
||||||| || || | |||| ||||| | |||||| | | | ||||||| ||| |||
Sbjct 723 CAAAGAGCGAGAT-AGTTGCGTTGCAGA-ATTCTA-CTCTACAGTGCAACATTGCCAATA 779
Query 1102 TAAGAGACGAGAACAGGTACAAGAGACTCCTGTGTATGGTGGACCTTACGAAAGACTTCT 1161
||||||| || ||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 780 TAAGAGATGAAAACAGATACAAGAGACTCCTCTGTATGGTGGACCTTACGAAAGACTTCT 839
Query 1162 TTTTCAGCTATTCTTACAATATAATGCGAAGTTTCCAGAAGAATATATGCGACCATGAGA 1221
|||||||||||||||||||||||||| |||||| |||||||||| ||||| | | ||||
Sbjct 840 TTTTCAGCTATTCTTACAATATAATGAGAAGTTACCAGAAGAATGTATGCAATTACGAGA 899
Query 1222 GTGGAGGTACTCTCTATAAGAAAATGTTTGTGTGGAACGAATTCTTGACTCGGGGAACTC 1281
||| | ||||||| ||||||||||||| ||||| || |||||||||||||||| ||
Sbjct 900 CCGGACATGTTCTCTATGAGAAAATGTTTGTCTGGAATGAGTTCTTGACTCGGGGAA-TC 958
Query 1282 -GACATCACCTTCGGAATACCCTGTGGACTGTAGCATTGGTGTATGGGTTT-TTTAAGCA 1339
||||||| |||||||||||||||||||||||||||||||| ||||| ||| ||||||||
Sbjct 959 CGACATCATCTTCGGAATACCCTGTGGACTGTAGCATTGGTTTATGG-TTTCTTTAAGCA 1017
Query 1340 GACAA-TACTTTCCGAAGCTGGACGGAATTTCAA-ACTCACTCTTATTGCTAGGCGTTCC 1397
| | | ||||| ||| |||| ||| |||| || | |||| ||||||||||||||||||
Sbjct 1018 GGCCTCT-CTTTCTGAATCTGGGCGGGATTTTAAGA-TCACCCTTATTGCTAGGCGTTCC 1075
Query 1398 CGCCATAATGCTGGAACCAGGTACTTGAAACGAGGAATAAAC-GAAAGTGGCAATGTTGC 1456
|| |||||||||||||||||||||||||| |||||| ||||| || | ||||||||||||
Sbjct 1076 CGTCATAATGCTGGAACCAGGTACTTGAAGCGAGGAGTAAACAGATA-TGGCAATGTTGC 1134
Query 1457 TAATGATGTGGAAACAGAACAGATAGTGTCTGAGGATGTTCCAGTAGACCGTCCC-ATGC 1515
||||| || || || || ||||||||||| || |||||||| | ||||| ||| ||||
Sbjct 1135 CAATGACGTCGAGACTGAGCAGATAGTGTCCGAAGATGTTCCTGAAGACCA-CCCTATGC 1193
Query 1516 AAATAAGTTCTGTTGTGCAGAATCGTGGCTCAATCCCTCTATTCTGGTCACAGGAGACCT 1575
|| |||||||||||||||||||||||||||||||||| || ||||||||||| |||||||
Sbjct 1194 AAGTAAGTTCTGTTGTGCAGAATCGTGGCTCAATCCCACTTTTCTGGTCACAAGAGACCT 1253
Query 1576 CACGGA-TGAAAGTTAAGCCTGATATAGTATTGTCAAAAAGGGA-CCTGAACTATGAGGC 1633
|||| | |||| | ||||| |||||||| |||||||||| || || || |||||||||
Sbjct 1254 CACG-ACTGAATCTAAAGCCGGATATAGTCTTGTCAAAAAAAGAACCAGA-CTATGAGGC 1311
Query 1634 AACTAGAGTTCACTTTGAAAATCTTGTGGAGCGTTATGGAGTCCCCATCATTATTCTGAA 1693
|||||| |||||||||| || ||||| || || |||||| ||||||||| ||||||||
Sbjct 1312 GACTAGACTTCACTTTGATAACCTTGTAGAACGATATGGAAACCCCATCATCATTCTGAA 1371
Query 1694 CTTGATCAAGACCAACGAGAGGAAACCCAGGGAGTCGATTCTCCGGGCAGAGTTTGCTAA 1753
|||||||||||| || || | || || || ||||| || ||||| | |||||||| |||
Sbjct 1372 CTTGATCAAGACAAAAGAAAAGAGGCCTAGAGAGTCAATCCTCCGAGAAGAGTTTGTTAA 1431
Query 1754 TGCAATTGACTTTATAAACAAAGATCTGCCGGAAGAAAATCGGCTTAGATTCCTCCACTG 1813
|||||||||||| |||||||||||| | || || |||||||| || |||||||||||||
Sbjct 1432 TGCAATTGACTTCATAAACAAAGATTTACCTGAGGAAAATCGTCTGCGATTCCTCCACTG 1491
Query 1814 GGACTTGCACAAACATTTTCACAGCAAAACAGA-AAATGTATTGGCACTTCTTGGAAAAG 1872
|||| |||||||||||||||| || |||||| | |||||| |||||||| ||||| ||||
Sbjct 1492 GGACCTGCACAAACATTTTCAGAGAAAAACA-ACAAATGTCTTGGCACTCCTTGGCAAAG 1550
Query 1873 TAGCTGCCTGTGCTTTGATGCTAACAGGTTTCTTTTATTATCAACTTACACCAGCAATGA 1932
||||||||||||| ||||||||||||| ||| ||||| |||||| | |||||||| ||||
Sbjct 1551 TAGCTGCCTGTGCATTGATGCTAACAGATTTGTTTTACTATCAAGTAACACCAGCTATGA 1610
Query 1933 AGCTTGAGGGTTATATGAGCTTGTC-T--TCGTCTGATGCCGACAC-G----T----CTC 1980
|| |||||||||| ||||||||||| | || |||||||| ||||| | | |||
Sbjct 1611 AGATTGAGGGTTACATGAGCTTGTCGTCCTCTTCTGATGCTGACACTGGGGATATATCTC 1670
Query 1981 CACATAATAGTTCTGATGATGATAGTAGGGATTATGACTCATTAGAGAAGAATTGCC-GC 2039
|||| | |||||||||||||||| | | | | | | | || |||||||| | || |
Sbjct 1671 CACACACTAGTTCTGATGATGAT-G-A----T-A-G-C-C-TT-GAGAAGAAAT-CCAGT 1717
Query 2040 CCAAGTAAGAATGTTGCAAATGGTGATTATGATGTCAAGCCTAGC-AGGCTCCAGAGTGG 2098
||||||||| |||| ||| | | |||||||||||| | | ||||| ||||||||
Sbjct 1718 AGGAGTAAGAATATTGCTTATGAAAAATGTGATGTCAAGCC-ACCCAGGCTTCAGAGTGG 1776
Query 2099 AGTGCTGCGGACCAACTGCATAGATTGCCTTGATCGTACAAATGTTGCCCAATATGCATA 2158
|| || ||||||| ||||| ||||||||||| ||||||||||| || |||||||||||
Sbjct 1777 CGTTCTTAGGACCAATTGCATTGATTGCCTTGACCGTACAAATGTAGCACAATATGCATA 1836
Query 2159 TGGTTGGGCTGCTCTAGGGCAACAGCTTCATGCT-TTAGGAATTAGAGATGCTCCAACAA 2217
||||||||||||||| ||||| ||||| |||| | ||||| |||||| ||| |||| | |
Sbjct 1837 TGGTTGGGCTGCTCTTGGGCAGCAGCTACATG-TATTAGGGATTAGAAATGTTCCAGCCA 1895
Query 2218 TAGAACTTGATGATCCTTTGTCTAGTACTTTAATGGGGTTATACGAGAGAATGGGAGACA 2277
|||||||||||||||| ||| ||| | | ||||||||||| || ||||||||||| ||||
Sbjct 1896 TAGAACTTGATGATCCCTTGGCTATTTCGTTAATGGGGTTGTATGAGAGAATGGGTGACA 1955
Query 2278 CACTAGCTTATCAATATGGTGGATCTGCAGCCCACAATAAGGTTTTTAGTGAAAGGCGAG 2337
|||||||| |||| ||||||||||| ||||||||||| |||||||| || || || |||
Sbjct 1956 CACTAGCTCATCAGTATGGTGGATCCGCAGCCCACAACAAGGTTTTCAGCGAGAGAAGAG 2015
Query 2338 GCCAGTGGAGAGCAGCAACCCAGTCACAAGAGTTCTTGAGGACTCTGCAACGTTATTATA 2397
||||||||||||||||||| |||||||| ||||||||||| ||||||||||| |||||||
Sbjct 2016 GCCAGTGGAGAGCAGCAACTCAGTCACAGGAGTTCTTGAGAACTCTGCAACGATATTATA 2075
Query 2398 ATAACGCATATATGGATGCGGATAAACAAGATGCCATTAATATATTTCTTGGTACTTTCC 2457
||||||||||||||||||| ||||||||||| |||||||||||||||||||| || ||||
Sbjct 2076 ATAACGCATATATGGATGCAGATAAACAAGACGCCATTAATATATTTCTTGGCACATTCC 2135
Query 2458 GGCCTGAACAAGGGA--GCCAGGCGGTTTGGGAGTTGCGTTCAGATTCCCACTCTAATGG 2515
||||||||| |||| ||||| | | |||||||| | ||| |||| | |||||||||
Sbjct 2136 AGCCTGAACA-GGGAATGCCAG-CAATCTGGGAGTTACAATCAAATTCTCTCTCTAATGG 2193
Query 2516 ACGAAGTGGAGAGATAAGCATGGGGGAAGATGAAAAGTTTCTTGT-AAAGAGGTGCTTAT 2574
||||| ||||||||| ||||| | ||||||| | ||||||||| ||| ||||||||||
Sbjct 2194 ACGAAATGGAGAGATGAGCATAGCAAAAGATGAGAGGTTTCTTGTGAAA-AGGTGCTTAT 2252
Query 2575 CAGATGGGAA-TATTCTCCATGAAAGTCACACTCCGA-TGTCTGCAATGAGTAGAAA-GA 2631
|||||||| | | ||||||| |||||| || ||| | || | || |||||||| || ||
Sbjct 2253 CAGATGGGGACT-TTCTCCACGAAAGTTGCATTCC-ACTGCCAGCCATGAGTAGCAATGA 2310
Query 2632 ATGAAAGCATATCACATAGAGGTTT-TGTGT-CG-TCACACCAAGTGACTCGTACTCATA 2688
||||||||| |||| | |||||| | || | | ||| || |||| | | ||||
Sbjct 2311 -TGAAAGCATGCCACAGAAAGGTTTCTCCGTACCATTACAGCATGTGA---G--C-CATA 2363
Query 2689 TAATTTCAGAATCATCACCAGATATGCCAGCTGCCGGTGATGTAACATTATCGAGGTGTA 2748
| ||||||| |||||| | ||||| |||| | | ||||||| ||||||| |||||||
Sbjct 2364 TTCTTTCAGAGTCATCATCTGATATACCAGTTTCTAATGATGTAGCATTATCAAGGTGTA 2423
Query 2749 CTCCGTCAATGCCTAGCACACAtttttttGGAGATGTCCAAAAAGTTCAACATAATGGTA 2808
|||| ||||||||| | | ||| | || |||||||| ||||| ||||| | | |||||
Sbjct 2424 CTCCTTCAATGCCTCGGAAACAGCTCTTCGGAGATGTGCAAAAGGTTCATCGTTTTGGTA 2483
Query 2809 GTAGCTCCA-TTTACTT-G-TCCGAGCAAGAAGATATGTCTAGTGTCTCAAATTTCGTTG 2865
| | || | ||||||| | | | | | ||||| |||||||||||||| ||||| ||||
Sbjct 2484 GC-GATCAAGTTTACTTTGGTGGG-G-AGGAAGACATGTCTAGTGTCTCCAATTTTGTTG 2540
Query 2866 ATATTGAGTGGCTTTCGTCGTCAGAAAATCTATGTGAGAACGATC-ACTTGTCCAGGCCG 2924
|| |||||||||||| || |||||||||| ||| ||||| | || | ||| | ||| ||
Sbjct 2541 ATGTTGAGTGGCTTTTATCATCAGAAAATCCATGCGAGAATGCTCTATTTGAC-AGGTCG 2599
Query 2925 TCAGCGCTTACAATATATTCAACCGCAGA-GACGTCTTCATCAGAGAATATCATCACTGA 2983
|| |||||||||| | ||| || || || |||||||||| ||||||||| | ||| ||
Sbjct 2600 TCGGCGCTTACAAAAAATTTGACAGC-GAAGACGTCTTCAACAGAGAATAGCGTCAATGG 2658
Query 2984 AGTAAAACAATTGACGCCAGCTATGAGAGAGAGTGGATCAAGCAGCAGGAAGGGAAAAGA 3043
|||| ||||| | | ||| ||| || || ||||| ||||||||||| |||||||| |
Sbjct 2659 AGTAGGACAATCGGCACCAACTACAAGTGAAAGTGGGTCAAGCAGCAGTAAGGGAAA-G- 2716
Query 3044 ACCAGTGGAAACCGAACTGTCTGTACACACAAAGATTCGCGATGA-TTTCCCAGATAGCT 3102
| || |||| || | | ||| || |||||| ||||| ||||| ||||||||
Sbjct 2717 ----G---AA-CCGA--TGG--G-A-ACA-AA-GATTCGGGATGACTTTCC-AGATAGCT 2759
Query 3103 TCAAACAATGGGTAGCATACGGGGAAGCACTCTGCCATTGA 3143
||||| |||||||||||||||| |||||||||||||| |||
Sbjct 2760 TCAAAGAATGGGTAGCATACGGTGAAGCACTCTGCCACTGA 2800
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 138948199023
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5