BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G20860.1
Length=1539
Score E
Sequences producing significant alignments: (Bits) Value
Ahg326467 jgi|Araly1|326467|fgenesh1_pm.C_scaffold_6001687 1197 0.0
> Ahg326467 jgi|Araly1|326467|fgenesh1_pm.C_scaffold_6001687
Length=1584
Score = 1197 bits (648), Expect = 0.0
Identities = 734/776 (95%), Gaps = 4/776 (1%)
Strand=Plus/Plus
Query 760 GGCAAAGACCTGACGGTGATTGTTGGCGATGATAGTGCCACCGGAGGAACTTCTGTCCCG 819
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 799 GGCAAAGACGAGACGGTGATTGTTGGCGATGATAGTGCCACCGGAGGAACTTCTGTCCCG 858
Query 820 GACACCGCTACAATGACGGTTACGGGTGACGGATTCATTGCACGTGATATCGGAATCAAG 879
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 859 GACACCGCTACAATGACGGTTACGGGTGACGGATTCATCGCACGAGATATCGGAATCAAG 918
Query 880 AACA-TAGCAGGGCCTAGAGGACATCAAGCCATAGCATTAAGCATCACATCAGACCAATC 938
|||| | ||||| ||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 919 AACACT-GCAGGACCTGGAGGACATCAAGCCATAGCATTAAGTATCACATCAGACCAATC 977
Query 939 AGTGTTATACCGATGTAGCATCTCCGGTTATCAAGACACACTTTACGCAGCTGCCTTGCG 998
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 978 AGTGTTATACCGATGTAGCATCTCTGGTTATCAAGACACACTTTACGCAGCTGCCTTGCG 1037
Query 999 TCAGTTCTATAGAGAATGTGACATTTATGGAACTATAGATTTCATATTCGGAAACGCAGC 1058
||||||||||||||||||||| || |||||||| |||||||||||||| |||||||||||
Sbjct 1038 TCAGTTCTATAGAGAATGTGATATATATGGAACAATAGATTTCATATTTGGAAACGCAGC 1097
Query 1059 TGCTGTTTTCCAAAGCTGCAACATATTCTTGCGTCGCCCTCATGGTGTCAAGGCCTATAA 1118
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1098 TGCGGTTTTTCAAAGCTGCAACATATTCTTGCGTCGCCCTCATGGTGTCAAGGCCTATAA 1157
Query 1119 TGTTATTCTTGCTAACGGGAGGACGGACCAACGTCAAAATACCGGATTTGCACTTCATAG 1178
|||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 1158 CGTTATTCTCGCTAACGGGAGGACGGACCAACTTCAGAATACCGGATTTGCACTTCATAG 1217
Query 1179 TTGTAGGATCAGGACAGACTCAGATCTTTCGCCCGTGAAACATAAGTATAGCTCTTACTT 1238
|||||||||| |||| || |||||||||||||| |||||||||| |||||||||||||||
Sbjct 1218 TTGTAGGATCCGGACGGATTCAGATCTTTCGCCGGTGAAACATATGTATAGCTCTTACTT 1277
Query 1239 AGGACGCCCGTGGAGAAAGTATTCGAGGGCTATAGTGATGGAATCATATATTGACGACGC 1298
|||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 1278 AGGACGGCCGTGGAGAAAGTATTCGAGGTCTATAGTGATGGAATCGTATATTGACGACGC 1337
Query 1299 GATCGCGGAGGGAGGATGGGCCGGGTGGTTAGACTCCGGAGACGAAGTACTAAAGACGTT 1358
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1338 GATAGCGGAGGAAGGATGGGCCGGGTGGTTAGACTCCGGAGACGAAGTACTAAAGACATT 1397
Query 1359 GTATTTTGGAGAGTTCAAGAATTATGGTCCTAAAGCTAGAATTTCCAAGAGAGTGACGTG 1418
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1398 GTATTTTGGAGAGTTTAAGAATTATGGTCCTAAAGCTAGAGTTTCCAAGAGAGTGACGTG 1457
Query 1419 GGAAGGGTTTCA-TTCGATTGGGTTTGAAGAAGCAAATTATTTTAGCGTCGTAAAGAGAA 1477
|||||||||||| || ||||||||||||||| |||| |||||||||||| ||||||| ||
Sbjct 1458 GGAAGGGTTTCACTT-GATTGGGTTTGAAGACGCAAGTTATTTTAGCGTTGTAAAGAAAA 1516
Query 1478 GAAATGGAGAAGACGTCACTAATGGTTTTAAGTATAAGTTTAAGATTAAGATACAA 1533
|||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 1517 GAAAAGGAGAAGACGTCACTAATGCTTTTAAGTATAAGATTAAGATTAAGATACAA 1572
Score = 1127 bits (610), Expect = 0.0
Identities = 714/765 (93%), Gaps = 4/765 (1%)
Strand=Plus/Plus
Query 1 ATGGGTGTTATAGATATGGTCTTGTTTTGGGTGTTATTGGTCAATGCCCTTCTCATTGTT 60
|||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGTATTATAGATATGGTTTTTTTTTGGGTGTTATTGGTCAATGCCCTTCTCATTGTT 60
Query 61 GATGCCTCTTCAAGAAATATGCCATTTGCTTACCAAAATGAAATGCAAAGGCATTGTAGC 120
||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||
Sbjct 61 AATGCCTCTTCAAGAAATTTGCCATTTGCTTACCAAAATGAACTTCAAAGGCATTGTAGC 120
Query 121 TCCACAAAGTACACCTCACTCTGTGTCCAAAACTTACGAGAGTTTCGACATGGATCTCTT 180
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCCACAAAGTACACTTCACTTTGTGTCCAAAACTTACGAGAGTTTCGACATGGATCTCTT 180
Query 181 GACGGTCTCGACTTTGTGTCTTTTCTTGTTAACAAGACTATCTCTGATTCCAATCTGCTA 240
|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 181 GACGGTCTCGACTTTGTGTCAGTTCTTGTTAACAAGACTATCTCTGACTCCAATCTGCTA 240
Query 241 ATTCCACCTCTCTCCTCGTCGATGGGTTCCTCCAAACTTGTTTCTCTGGAAGATTCCACT 300
||||| ||||||||||| ||||||||||||||| |||| |||||||||||||||||||||
Sbjct 241 ATTCCTCCTCTCTCCTCTTCGATGGGTTCCTCCGAACTAGTTTCTCTGGAAGATTCCACT 300
Query 301 TATACGTTGCCTTCACCTTCGGTCTCAGATTCTTGTGAACGGCTCATGAAAATGTCCACA 360
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TATACTTTGCCTTCACCTTCGGTCTCAGATTCTTGTGAACGGCTCATGAAAATGTCCACA 360
Query 361 AGACGACTTAGGCAAGCCATGGAAGCTCTCAATGGCTCATCGAGAAAGCGTCACACCAAA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGACGACTTAGGCAAGCCATGGAAGCTCTCAATGGCTCATCGAGAAAGCGTCACACCAAA 420
Query 421 CACGATGTCCAAACATGGCTCTCCGCTGCCATGACTTTCCAACAAGCTTGCAAAGACTCC 480
||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 421 CACGACGTCCAAACATGGCTCTCCGCCGCCATTACTTTCCAACAAGCTTGCAAAGACTCC 480
Query 481 ATCCTTGACT-CCGGTGGCTCCTCCTCCGCCTCTGCCATCAGCCACATATCACAGAAA-A 538
|||||||||| ||| || ||||| || || ||||||||||||||||| ||| ||| |
Sbjct 481 ATCCTTGACTACCG-TGAAACCTCCCCCTCCGCTGCCATCAGCCACATAAAACA-AAAGA 538
Query 539 TGGATCACCTATCTCGACTGGTCAGCAACTCCCTGACTCTGGTCGACACAATCATGAAGA 598
|||||||||| ||||| || |||||||||||| || | || ||||||||||||||| |||
Sbjct 539 TGGATCACCTCTCTCGGCTCGTCAGCAACTCCTTGGCCCTTGTCGACACAATCATGCAGA 598
Query 599 ATCCAAAACCAAAGACAAAGTCAACCGCTCTTCCCCGGTGGGTCACTGCCGGAGAACGGA 658
||||||| ||||||||||||||||| | ||||||||| |||||||||||||||||| |||
Sbjct 599 ATCCAAAGCCAAAGACAAAGTCAACTGGTCTTCCCCGATGGGTCACTGCCGGAGAAAGGA 658
Query 659 GACTTCTAGTAGGTAGAGCAAGAGCACACGTGGTAGTCGCCAAAGACGGTTCCGGAGATT 718
||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 659 GACTTCTGGCAGGTAGAGCAAGAGCACACGTGGTAGTCGCCAAAGACGGATCCGGAGATT 718
Query 719 ACCGCACCGTGATGGAGGCTGTCACGGCTGCCCATGGAAATGGCA 763
|||| ||||||||||||||||||||||||||||| | ||||||||
Sbjct 719 ACCGGACCGTGATGGAGGCTGTCACGGCTGCCCACGCAAATGGCA 763
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57630540685
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5