BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G20870.1 Length=1598 Score E Sequences producing significant alignments: (Bits) Value Ahg941640 jgi|Araly1|941640|scaffold_602184.1 2209 0.0 > Ahg941640 jgi|Araly1|941640|scaffold_602184.1 Length=1540 Score = 2209 bits (1196), Expect = 0.0 Identities = 1429/1542 (93%), Gaps = 14/1542 (1%) Strand=Plus/Plus Query 18 CACTTTT--AGAGAAATGAGTAGTCATGATACATACCAAAAACTCATTTTGTTTTGCCTA 75 ||||||| ||||| ||| || ||||||||||||||||||| |||||||| ||||||||| Sbjct 6 CACTTTTACAGAGAGATGGGTCGTCATGATACATACCAAAAGCTCATTTTCTTTTGCCTA 65 Query 76 TCCATATTCTTTCTTCAAAACATATTGAAGAATGTGGAGGGCTTGGCATGTAACTGGGGT 135 || ||||| || ||||| ||||||| |||||||||||||||||||||||||||||||||| Sbjct 66 TCTATATTGTTACTTCACAACATATCGAAGAATGTGGAGGGCTTGGCATGTAACTGGGGT 125 Query 136 ACACAAGCGAGCCATCCACTACCACCAAACATAGTGGTGAAACTCCTTAGGGACAATGGG 195 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 126 ACACAAGCCAGCCATCCACTACCACCAAACATAGTGGTGAAACTCCTTAGGGACAATGGG 185 Query 196 TTCAACAAAGTTAAGCTATTTGAAGCTGACCCTGGTGCACTCAGAGCTCTTGGTAAATCC 255 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 186 TTCAACAAAGTTAAGCTATTTGAAGCTGACCCTGGTGCACTCAGAGCTCTTGGTAAATCC 245 Query 256 GGTATTCAAGTCATGGTCGGTATCCCCAACGATCTCTTGGCAACTATGGCATCCACTGTT 315 ||||||||||||||||||||||| |||||| ||||||||| ||||||||| ||||||||| Sbjct 246 GGTATTCAAGTCATGGTCGGTATTCCCAACAATCTCTTGGAAACTATGGCTTCCACTGTT 305 Query 316 ACCAACGCAGAGCTTTGGGTTCAACAAAACGTCTCTCAATACATCTCTAGATATGGAACC 375 |||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||| Sbjct 306 ACCAACGCAGAGCTCTGGGTTCAACAAAACGTCTCTCAGTATATCTCTAGATATGGAACT 365 Query 376 GACATAAGATATGTAGCGGTGGGGAATGAGCCATTCTTGAAGACCTATAATA-ACAGATT 434 ||||||||||||||||| ||||||||||| |||||||||||||| || || | ||||||| Sbjct 366 GACATAAGATATGTAGCTGTGGGGAATGAACCATTCTTGAAGACTTACAA-AGACAGATT 424 Query 435 CGTCCGATCAACATATCCAGCGCTGCAAAACGTTCAAGCAGCTCTAGTTAAAGCTGGTCT 494 |||||| ||||||||||| |||||||| ||||||||||||||||| || ||||| ||||| Sbjct 425 CGTCCGTTCAACATATCCGGCGCTGCAGAACGTTCAAGCAGCTCTGGTGAAAGCGGGTCT 484 Query 495 TGGTCGGCAAGTCAAAGTGACGGTTCCTCTTAATGCCGACGTCTACGAATCCAGCGATGG 554 ||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| Sbjct 485 TGGCCGGCAAGTCAAAGTGACGGTTCCTCTTAATGCCGACGTCTATGAATCCGGCGATGG 544 Query 555 TCTTCCTTCTTCCGGCGATTTTCGATCAGACATAAAAACCTTAATGATCTCTATTGTTCG 614 |||||||||||| ||||| || ||||||||||| |||||||||||| |||| |||||||| Sbjct 545 TCTTCCTTCTTCTGGCGACTTCCGATCAGACATCAAAACCTTAATGGTCTCCATTGTTCG 604 Query 615 ATTCCTAGCTGATTCCGTCTCACCAATCACCTTCAACATCTACCCTTTCCTCTCTCTCAA 674 |||||| ||| |||| |||||||| || ||||||||||||||||||||||||||||| || Sbjct 605 ATTCCTTGCTAATTCTGTCTCACCCATTACCTTCAACATCTACCCTTTCCTCTCTCTTAA 664 Query 675 CGCTGATCCAAATTTCCCGCGCGAATACGCCTTCTTCCC-AAACGGAGGCGGCGGCGGTG 733 ||| ||||||||||||||||||||||||||||||||||| ||| ||||| |||||||| | Sbjct 665 CGCCGATCCAAATTTCCCGCGCGAATACGCCTTCTTCCCTAAA-GGAGGAGGCGGCGGCG 723 Query 734 GAGCTAAGCCCGTCGTCGATGGTTCAATCTCTTACACGAACGTCTTCGACGCAAATTTCG 793 |||| |||||||||||||| || |||||||||||||||||||| |||||||||||||||| Sbjct 724 GAGCAAAGCCCGTCGTCGACGGATCAATCTCTTACACGAACGTTTTCGACGCAAATTTCG 783 Query 794 ACACTTTAGTCTCGGCGCTGGAGAAGAACGGATTTGATGCGAACAAAATTGAAATCATCG 853 ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct 784 ACACTTTAGTCTCGGCGCTGGAGAAAAACGGATTTGACCCGAACAAAATTGAAATCATCG 843 Query 854 TCGGAGAAGTCGGATGGCCAACCGACGGTGATCAGAACGCAAATCCTGCAATGGCTCAGA 913 |||||||||||||||||||||||||||| ||||| ||||| ||||| ||||||||||||| Sbjct 844 TCGGAGAAGTCGGATGGCCAACCGACGGCGATCAAAACGCGAATCCGGCAATGGCTCAGA 903 Query 914 GATTCAATCAAGGGTTATTGAATCGTATCCTTCAAGGACAAGGTACGCCTCGCCGGAGAA 973 ||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 904 GATTCAATCAAGGATTATTGAATCGTATCCTTCAAGGACAAGGAACGCCTCGTCGGAGAA 963 Query 974 TGGCGCCGGAAGTTTATAT-ATTCTCATTAGTAGACGAAGATGCCAAGAGCATTGATCCC 1032 |||||||||||||| | | |||||||||||||||||||||||||||||||||||||||| Sbjct 964 CGGCGCCGGAAGTTT-TCTTATTCTCATTAGTAGACGAAGATGCCAAGAGCATTGATCCC 1022 Query 1033 GGGAAATTCGAAAGACATTGGGGAATATTCTCTTATGACGGCGCCGTTAAGTATCCTCTG 1092 || ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1023 GGAAAATTCGAACGACATTGGGGAATATTCTCTTATGACGGCACCGTTAAGTATCCTCTG 1082 Query 1093 AGTCTCGGTAACGGCCGTCCGTTGGTTCCGACTAAAGGTGTTCGTTACCAGGCACGTGAG 1152 |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| Sbjct 1083 AGTCTCGGTAACGGCCGTCCGTTGGTTCCGGCTAAAGGTGTTCGTTACTTGGCACGTGAG 1142 Query 1153 TGGTGCGTGCTCTCCACTCAGGCTGCGGGTAACGGTGCTGCCACTTGGCAGGCTTCTGCT 1212 |||||||||||||||||||| |||||||| |||||||| | | ||||||| ||||| Sbjct 1143 TGGTGCGTGCTCTCCACTCAAGCTGCGGGGAACGGTGC-G----T-GGCAGGCGCCTGCT 1196 Query 1213 ACGTACGCGTGTCAAAATGCCGACTGCACCTCGCTCGGGCCGGGTTCCTCCTGCGCCGCC 1272 ||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||| ||| Sbjct 1197 ACGTACGCGTGTCAAAACGCCGACTGTACCTCGCTCGGGCCGGGTTCCTCTTGCGCTGCC 1256 Query 1273 TTGGACCCGACCGCGAATGCTTCTTATGCGTTCAATATGTATTTTCAAAAAATGGATCAT 1332 || |||||||||||||| |||||||| || ||||| |||||||||||||||||||||||| Sbjct 1257 TTAGACCCGACCGCGAACGCTTCTTACGCCTTCAACATGTATTTTCAAAAAATGGATCAT 1316 Query 1333 CGTCGTGGCTCATGTGATTTTAACAATCTTGGGGTTGTTACTAAGATAGATCCGTCAAGT 1392 |||||||||||||| ||||||||||||||||||||| |||||||||| |||||||| ||| Sbjct 1317 CGTCGTGGCTCATGCGATTTTAACAATCTTGGGGTTCTTACTAAGATTGATCCGTCGAGT 1376 Query 1393 GGTTCCTGTAGGTTTCCTATCGAAATCGACACGAGCAGGCAGCAGATGTCGAATCCGCCA 1452 || || ||||||||||||||||||||||||||||||||||||||||||| ||| |||||| Sbjct 1377 GGCTCGTGTAGGTTTCCTATCGAAATCGACACGAGCAGGCAGCAGATGTTGAAGCCGCCA 1436 Query 1453 CCGAGGAATTCAGGTGCATCTGAAGCAAAGTATAGGTTGGGGGCAGCCGTGGTGATGGTA 1512 ||||||||||| |||||||| |||||||| | |||||||| |||||| |||| ||||||| Sbjct 1437 CCGAGGAATTCCGGTGCATCCGAAGCAAATTGTAGGTTGGCGGCAGCGGTGGCGATGGTA 1496 Query 1513 ATCTGTTTGGTGTTCTCTAATTGATCCTTGGGGATGtttttt 1554 ||| |||||||||| ||||||||||||||||||||||||||| Sbjct 1497 ATCGGTTTGGTGTTTTCTAATTGATCCTTGGGGATGTTTTTT 1538 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59877865140 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5