BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G20870.1
Length=1598
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941640 jgi|Araly1|941640|scaffold_602184.1 2209 0.0
> Ahg941640 jgi|Araly1|941640|scaffold_602184.1
Length=1540
Score = 2209 bits (1196), Expect = 0.0
Identities = 1429/1542 (93%), Gaps = 14/1542 (1%)
Strand=Plus/Plus
Query 18 CACTTTT--AGAGAAATGAGTAGTCATGATACATACCAAAAACTCATTTTGTTTTGCCTA 75
||||||| ||||| ||| || ||||||||||||||||||| |||||||| |||||||||
Sbjct 6 CACTTTTACAGAGAGATGGGTCGTCATGATACATACCAAAAGCTCATTTTCTTTTGCCTA 65
Query 76 TCCATATTCTTTCTTCAAAACATATTGAAGAATGTGGAGGGCTTGGCATGTAACTGGGGT 135
|| ||||| || ||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 66 TCTATATTGTTACTTCACAACATATCGAAGAATGTGGAGGGCTTGGCATGTAACTGGGGT 125
Query 136 ACACAAGCGAGCCATCCACTACCACCAAACATAGTGGTGAAACTCCTTAGGGACAATGGG 195
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 126 ACACAAGCCAGCCATCCACTACCACCAAACATAGTGGTGAAACTCCTTAGGGACAATGGG 185
Query 196 TTCAACAAAGTTAAGCTATTTGAAGCTGACCCTGGTGCACTCAGAGCTCTTGGTAAATCC 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 186 TTCAACAAAGTTAAGCTATTTGAAGCTGACCCTGGTGCACTCAGAGCTCTTGGTAAATCC 245
Query 256 GGTATTCAAGTCATGGTCGGTATCCCCAACGATCTCTTGGCAACTATGGCATCCACTGTT 315
||||||||||||||||||||||| |||||| ||||||||| ||||||||| |||||||||
Sbjct 246 GGTATTCAAGTCATGGTCGGTATTCCCAACAATCTCTTGGAAACTATGGCTTCCACTGTT 305
Query 316 ACCAACGCAGAGCTTTGGGTTCAACAAAACGTCTCTCAATACATCTCTAGATATGGAACC 375
|||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||
Sbjct 306 ACCAACGCAGAGCTCTGGGTTCAACAAAACGTCTCTCAGTATATCTCTAGATATGGAACT 365
Query 376 GACATAAGATATGTAGCGGTGGGGAATGAGCCATTCTTGAAGACCTATAATA-ACAGATT 434
||||||||||||||||| ||||||||||| |||||||||||||| || || | |||||||
Sbjct 366 GACATAAGATATGTAGCTGTGGGGAATGAACCATTCTTGAAGACTTACAA-AGACAGATT 424
Query 435 CGTCCGATCAACATATCCAGCGCTGCAAAACGTTCAAGCAGCTCTAGTTAAAGCTGGTCT 494
|||||| ||||||||||| |||||||| ||||||||||||||||| || ||||| |||||
Sbjct 425 CGTCCGTTCAACATATCCGGCGCTGCAGAACGTTCAAGCAGCTCTGGTGAAAGCGGGTCT 484
Query 495 TGGTCGGCAAGTCAAAGTGACGGTTCCTCTTAATGCCGACGTCTACGAATCCAGCGATGG 554
||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 485 TGGCCGGCAAGTCAAAGTGACGGTTCCTCTTAATGCCGACGTCTATGAATCCGGCGATGG 544
Query 555 TCTTCCTTCTTCCGGCGATTTTCGATCAGACATAAAAACCTTAATGATCTCTATTGTTCG 614
|||||||||||| ||||| || ||||||||||| |||||||||||| |||| ||||||||
Sbjct 545 TCTTCCTTCTTCTGGCGACTTCCGATCAGACATCAAAACCTTAATGGTCTCCATTGTTCG 604
Query 615 ATTCCTAGCTGATTCCGTCTCACCAATCACCTTCAACATCTACCCTTTCCTCTCTCTCAA 674
|||||| ||| |||| |||||||| || ||||||||||||||||||||||||||||| ||
Sbjct 605 ATTCCTTGCTAATTCTGTCTCACCCATTACCTTCAACATCTACCCTTTCCTCTCTCTTAA 664
Query 675 CGCTGATCCAAATTTCCCGCGCGAATACGCCTTCTTCCC-AAACGGAGGCGGCGGCGGTG 733
||| ||||||||||||||||||||||||||||||||||| ||| ||||| |||||||| |
Sbjct 665 CGCCGATCCAAATTTCCCGCGCGAATACGCCTTCTTCCCTAAA-GGAGGAGGCGGCGGCG 723
Query 734 GAGCTAAGCCCGTCGTCGATGGTTCAATCTCTTACACGAACGTCTTCGACGCAAATTTCG 793
|||| |||||||||||||| || |||||||||||||||||||| ||||||||||||||||
Sbjct 724 GAGCAAAGCCCGTCGTCGACGGATCAATCTCTTACACGAACGTTTTCGACGCAAATTTCG 783
Query 794 ACACTTTAGTCTCGGCGCTGGAGAAGAACGGATTTGATGCGAACAAAATTGAAATCATCG 853
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 784 ACACTTTAGTCTCGGCGCTGGAGAAAAACGGATTTGACCCGAACAAAATTGAAATCATCG 843
Query 854 TCGGAGAAGTCGGATGGCCAACCGACGGTGATCAGAACGCAAATCCTGCAATGGCTCAGA 913
|||||||||||||||||||||||||||| ||||| ||||| ||||| |||||||||||||
Sbjct 844 TCGGAGAAGTCGGATGGCCAACCGACGGCGATCAAAACGCGAATCCGGCAATGGCTCAGA 903
Query 914 GATTCAATCAAGGGTTATTGAATCGTATCCTTCAAGGACAAGGTACGCCTCGCCGGAGAA 973
||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 904 GATTCAATCAAGGATTATTGAATCGTATCCTTCAAGGACAAGGAACGCCTCGTCGGAGAA 963
Query 974 TGGCGCCGGAAGTTTATAT-ATTCTCATTAGTAGACGAAGATGCCAAGAGCATTGATCCC 1032
|||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||
Sbjct 964 CGGCGCCGGAAGTTT-TCTTATTCTCATTAGTAGACGAAGATGCCAAGAGCATTGATCCC 1022
Query 1033 GGGAAATTCGAAAGACATTGGGGAATATTCTCTTATGACGGCGCCGTTAAGTATCCTCTG 1092
|| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1023 GGAAAATTCGAACGACATTGGGGAATATTCTCTTATGACGGCACCGTTAAGTATCCTCTG 1082
Query 1093 AGTCTCGGTAACGGCCGTCCGTTGGTTCCGACTAAAGGTGTTCGTTACCAGGCACGTGAG 1152
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1083 AGTCTCGGTAACGGCCGTCCGTTGGTTCCGGCTAAAGGTGTTCGTTACTTGGCACGTGAG 1142
Query 1153 TGGTGCGTGCTCTCCACTCAGGCTGCGGGTAACGGTGCTGCCACTTGGCAGGCTTCTGCT 1212
|||||||||||||||||||| |||||||| |||||||| | | ||||||| |||||
Sbjct 1143 TGGTGCGTGCTCTCCACTCAAGCTGCGGGGAACGGTGC-G----T-GGCAGGCGCCTGCT 1196
Query 1213 ACGTACGCGTGTCAAAATGCCGACTGCACCTCGCTCGGGCCGGGTTCCTCCTGCGCCGCC 1272
||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||| |||
Sbjct 1197 ACGTACGCGTGTCAAAACGCCGACTGTACCTCGCTCGGGCCGGGTTCCTCTTGCGCTGCC 1256
Query 1273 TTGGACCCGACCGCGAATGCTTCTTATGCGTTCAATATGTATTTTCAAAAAATGGATCAT 1332
|| |||||||||||||| |||||||| || ||||| ||||||||||||||||||||||||
Sbjct 1257 TTAGACCCGACCGCGAACGCTTCTTACGCCTTCAACATGTATTTTCAAAAAATGGATCAT 1316
Query 1333 CGTCGTGGCTCATGTGATTTTAACAATCTTGGGGTTGTTACTAAGATAGATCCGTCAAGT 1392
|||||||||||||| ||||||||||||||||||||| |||||||||| |||||||| |||
Sbjct 1317 CGTCGTGGCTCATGCGATTTTAACAATCTTGGGGTTCTTACTAAGATTGATCCGTCGAGT 1376
Query 1393 GGTTCCTGTAGGTTTCCTATCGAAATCGACACGAGCAGGCAGCAGATGTCGAATCCGCCA 1452
|| || ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1377 GGCTCGTGTAGGTTTCCTATCGAAATCGACACGAGCAGGCAGCAGATGTTGAAGCCGCCA 1436
Query 1453 CCGAGGAATTCAGGTGCATCTGAAGCAAAGTATAGGTTGGGGGCAGCCGTGGTGATGGTA 1512
||||||||||| |||||||| |||||||| | |||||||| |||||| |||| |||||||
Sbjct 1437 CCGAGGAATTCCGGTGCATCCGAAGCAAATTGTAGGTTGGCGGCAGCGGTGGCGATGGTA 1496
Query 1513 ATCTGTTTGGTGTTCTCTAATTGATCCTTGGGGATGtttttt 1554
||| |||||||||| |||||||||||||||||||||||||||
Sbjct 1497 ATCGGTTTGGTGTTTTCTAATTGATCCTTGGGGATGTTTTTT 1538
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59877865140
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5