BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G20885.1
Length=770
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488994 jgi|Araly1|488994|fgenesh2_kg.6__2128__AT5G20885.1 928 0.0
> Ahg488994 jgi|Araly1|488994|fgenesh2_kg.6__2128__AT5G20885.1
Length=724
Score = 928 bits (502), Expect = 0.0
Identities = 676/753 (90%), Gaps = 39/753 (5%)
Strand=Plus/Plus
Query 12 tctctctctctctctctcacacacacacacaAACGCACATACTTGAGCAAAGTCAT--C- 68
|||||||||||||||||| | ||||||||| | ||| ||||||||||| |||| |
Sbjct 1 TCTCTCTCTCTCTCTCTC-C-CACACACAC--A--CAC--ACTTGAGCAAAATCATCACA 52
Query 69 ACAATGAGCTTCTTCATCGAAGATTCTGGTCTCATAGTCACTCAGCTTCTCTACAAAATG 128
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 53 ACAATGAGCTTCTTCATCGAAGATTCTGGTCTCATAGTCACTCAACTTCTCTACAAAATG 112
Query 129 GCTGTTCTCATCACCGTCTTGAGATGGATCCTCGCTTGGATCTTACGCTACCGATCCAGA 188
||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 113 GCTGTTCTCATCACCATCTTGAGATGGATTCTCGCATGGATCTTACGCTACCGATCCAGA 172
Query 189 TCCAGATCCA-C-C-TCTT-CT--TCCACTTCCGCCTGTCCTTCGATTTCCTCACAGGCG 242
|||||||||| | | |||| || ||| |||||| | |||||||||||| |||||| |
Sbjct 173 TCCAGATCCACCTCATCTTCCTCCTCCCCTTCCGTTTCTCCTTCGATTTCGTCACAGACA 232
Query 243 ATCAAAGAAAGCCTCTCCGTGACGACGTTCCGTGACGCAGCTGAGAGATCTCCGGCGATG 302
||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 233 ATCAAGGAAAGCCTCTCCGTGACGACGTTCCGTGACGCGGCGGAGAGATCTCCGGCGATG 292
Query 303 ATCAACGACACCTGCGCTGTGTGTCTCGGAGATCTGGAAGATGGAGATGAGGTTAGAGAA 362
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 293 ATCAACGACACCTGCGCGGTGTGTCTCGGAGATCTGGAAGATGGAGATGAGGTTAGAGAG 352
Query 363 CTCAGGAACTGTAGCCATATGTTTCACCGTGAGTGTATTGACCGGTGGTTGGATTATGAA 422
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 353 CTCAGGAACTGTAGTCATATGTTTCACCGTGAGTGTATCGACCGGTGGTTGGATTACGAA 412
Query 423 TGTTGCGGTGGTGATGAGAATAACGAAGGTGAGGAGGATAATCACCGTACGTGTCCTCTT 482
||||||||||| ||||| |||||||||| |||||||||||| ||||| ||||||||||||
Sbjct 413 TGTTGCGGTGGAGATGATAATAACGAAGCTGAGGAGGATAACCACCGGACGTGTCCTCTT 472
Query 483 TGTAGAACTCCGCTACTTGCTGCTAATACGACGTCGTGTGGTGATTGGCCGACGAAGAAC 542
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 473 TGTAGAACTCCGCTACTTGCTGCTAATACGACGTCGTGTGGTGATTGGCCGGCGAAGAAC 532
Query 543 GAACCTAGCTGGGCCGTTGAACGGCTTCTCTACCTCTTCGGAGATGATCTTCACGTCTGa 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 GAACCTAGCTGGGCCGTTGAACGGCTTCTCTACCTCTTCGGAGATGATCTTCACGTCTGA 592
Query 603 tttcatttttttttgtcttttccgatttttatttg-attttttatttAGTGGGATCGATT 661
|| ||| || | |||| |||| |||| | |||||||||||| | |
Sbjct 593 TTG-ATTATTC---GAATTTT---ATTTA-ATTTTCAATTTTTATTTAGT----T-G--- 636
Query 662 TTGATCAATTAGAAATTTAAGTAGTGAGAGTGGTTAATTTTTGTAAATTGGGGGATTTAA 721
||||||| ||||||| | ||||||||||||||||||||| ||||||||||||||||||
Sbjct 637 --GATCAAT-AGAAATT-ACGTAGTGAGAGTGGTTAATTTT-GTAAATTGGGGGATTTAA 691
Query 722 TGTGTTAGATTAGGAAATATAATAATAATATCA 754
|| ||||||||||||| ||||||||| ||||||
Sbjct 692 TGGGTTAGATTAGGAAGTATAATAATTATATCA 724
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28401573165
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5