BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G20910.1 Length=1220 Score E Sequences producing significant alignments: (Bits) Value Ahg488997 jgi|Araly1|488997|fgenesh2_kg.6__2131__AT5G20910.1 1760 0.0 > Ahg488997 jgi|Araly1|488997|fgenesh2_kg.6__2131__AT5G20910.1 Length=1182 Score = 1760 bits (953), Expect = 0.0 Identities = 1054/1103 (96%), Gaps = 6/1103 (1%) Strand=Plus/Plus Query 1 GATCAAGAAAACTCGTCTCCTACAAAAATCCCAGAAGACAAGAGATTGGTTCTTCTTTTG 60 |||||||||||||||||||||| |||||||||||||||||||| ||| ||||||| ||| Sbjct 1 GATCAAGAAAACTCGTCTCCTAGAAAAATCCCAGAAGACAAGAAATT-GTTCTTCATTTC 59 Query 61 CATCATTCTTACAAAATCCCCAAAATCATTCGAAACCCCTGAGTATTCTCCTTAACTCTA 120 ||||||||||||||||||||| || || ||||||||| ||||| ||||||||||||||| Sbjct 60 CATCATTCTTACAAAATCCCC-AATTCTTTCGAAACCGCTGAGAATTCTCCTTAACTCTT 118 Query 121 AG-AAAT-AAATTTCTGAATGGATGCATCGTCTTCACCGTCTCCTTCCGAGGAAAGCTTG 178 || |||| |||||| | ||||||| ||||||||||||||||||||||||||||||||||| Sbjct 119 AGAAAATAAAATTTTTAAATGGATACATCGTCTTCACCGTCTCCTTCCGAGGAAAGCTTG 178 Query 179 AAGCTTGAGCTTGATGATCTTCAGAAACAGCTGAACAAAAAGCTGAGATTCGAAGCATCC 238 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 179 AAGCTTGAGCTGGATGATCTTCAGAAACAGCTGAACAAAAAGCTGAGATTCGAAGCATCC 238 Query 239 GTTTGTTCTATTCATAATCTTCTCCGTGATCACTACTCTTCTTCCTCTCCTTCTCTCCGC 298 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 239 GTTTCTTCTATTCATAATCTTCTCCGTGATCACTACTCTTCTTCCTCTCCTTCTCTTCGC 298 Query 299 AAACAGTTCTATATAGTTGTATCTCGTGTCGCTACGGTTCTTAAGACAAGATATACAGCT 358 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 299 AAACAGTTCTATATTGTTGTATCTCGTGTCGCTACGGTTCTTAAGACAAGATATACAGCT 358 Query 359 ACTGGATTTTGGGTTGCTGGACTGAGTCTTTTCGAAGAGGCTGAGCGACTTGTCTCTGAT 418 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 359 ACTGGATTTTGGGTTGCTGGACTGAGTCTTTTCGAAGAGGCTGAGCGACTTGTTTCTGAT 418 Query 419 GCTTCTGAGAAGAAACATTTGAAATCTTGCGTTGCTCAAGCTAAGGAGCAGTTAAGCGAA 478 |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| Sbjct 419 GCTTCTGAGAAGAAACATTTGAAATCTTGCATTGCTCAAGCTAAGGAACAGTTAAGCGAA 478 Query 479 GTAGATAATCAGCCAACAGAGAGCTCACAAGGTTATCTTTTTGAGGGACATCTT-ACGGT 537 |||||||||||||| ||||||| |||||||||||||||||||||||||||| || ||||| Sbjct 479 GTAGATAATCAGCCGACAGAGAACTCACAAGGTTATCTTTTTGAGGGACAT-TTAACGGT 537 Query 538 TGATCGTGAGCCGCCACAGCCTCAGTGGCTAGTACAGCAGAATCTCATGTCTGCTTTCGC 597 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 538 TGATCGTGAGCCGCCACAGCCTCAGTGGCTAGTGCAGCAGAATCTCATGTCTGCTTTCGC 597 Query 598 TTCTATCGTTGGTGGTGAATCCTCTAATGGTCCTACTGAAAACACTATTGGGGAAACTGC 657 ||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 598 TTCTATCGTTGCTGGTGAATCCTCTAATGGTCCTGCTGAAAACACTCTTGGGGAAACTGC 657 Query 658 TAACTTGATGCAAGAACTTATCAATGGTCTTGACATGATCATTCCAGATATACTAGATGA 717 ||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||| || Sbjct 658 CAACTTGATGCAAGAACTCATCAACGGTCTTGACATGATCATTCCAGAGATACTAGAAGA 717 Query 718 TGGTGGACCACCAAGAGCTCCACCGGCAAGTAAAGAAGTTGTAGAGAAACTCCCAGTCAT 777 ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 718 TGGGGGACCACCAAGAGCTCCACCGGCAAGTAAAGAAGTTGTCGAGAAACTCCCAGTCAT 777 Query 778 TATTTTCACCGAGGAATTGCTTAAAAAGTTTGGAGCAGAGGCAGAATGTTGCATCTGCAA 837 ||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 778 CATTTTCAGCAAGGAATTGCTTAAAAAGTTCGGAGCAGAGGCAGAATGTTGCATCTGCAA 837 Query 838 GGAGAATCTAGTTATTGGCGACAAGATGCAGGAATTGCCATGCAAGCACACATTTCACCC 897 ||||||||| || ||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct 838 GGAGAATCTGGTAATTGGCGACAAAATGCAGGAGTTGCCATGCAAGCACACATTTCACCC 897 Query 898 TCCTTGCCTAAAGCCTTGGCTGGACGAGCATAACTCTTGCCCTATATGCCGCCATGAATT 957 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 898 TCCTTGCCTAAAGCCTTGGCTGGACGAGCATAACTCTTGCCCTATATGCCGCCATGAATT 957 Query 958 ACCAACAGACGATCAGAAATACGAAAACTGgaaagagagagagaaagaggccgaagaaga 1017 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 958 ACCAACAGACGATCAGAAATACGAAAACTGGAAAGAGAGGGAGAAAGAGGCCGAAGAAGA 1017 Query 1018 gaggaagggcgcagagaaTGCTGTCCGCGGAGGTGAATATATGTACGTTTAAATTTCAAT 1077 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1018 GAGGAAAGGCGCAGAGAATGCTGTCCGCGGAGGTGAATATATGTACGTTTAAATTTTAAT 1077 Query 1078 CAGTTATGGCACACTCCCATTGT 1100 ||||||||||||||||||||||| Sbjct 1078 CAGTTATGGCACACTCCCATTGT 1100 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45556885815 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5